MD12G1210000.v1.1

phosphatase 2C

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
28886576 .. 28889763
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1210000.v1.1.491

Sequence Viewer

Length: 1119 bp
ATGGAGCAGTTATCCTCCATGTTCAGCGGGCTGGCGCGGTCGCTATCATTGAAGAAGGGGAAGAACAATGATGAGAAGTCCGGTGCAAGAGGAGCTGCAGAAGCAATGGCGAAGGAGGCGAAGAAGAATGACATGATCCTACGCTCTTCTGGGATTGTCTATGTCGATGGTTCAAATAATTTTGCTTCTGTTTTCTCGAAAAGAGGCGAGAAAGGAGTCAACCAGGATTGCTGCTTTGTGTGGGAGGGATTTGGGTTCCAAGAAGATATGATGTTTTGTGGGATTTTCGACGGGCATGGTCCATGGGGACATTTTGTGGCAAAACAGATCAGAGAAACAATGCCACCCTCTCTGTTGTGCAGTTGGCAAGAGACCCTAGCTCAAACTTCTATTGTCCCGGATCCAGATTTGGATAAAAAGTGTCACCGATTTAATGTATGGAAGGATTCCTATATCAAAACTTGCGCTGCCATTGATCACGAGCTTGGACAGCATCGTAGAATCGATTCCTTTTACAGCGGAACAACTGCCCTGAGTATTGTCAGACAGGGCGAGCTCATTTTCATAGCAAATGTTGGCGATTCTCGCGCTGTTTTGGCCACAACTTTAGATGACGGAAGCTTGGTGCCGGTTCAGCTTACTGTCGATTTCAAGCCTAGTTTGCCTCAGGAGGCGGAGAGAATAATTCAAAGCAATGGACGCGTTTTCTGTTTAGATGATGAGCCGGGAGTGCAAAGGGTGTGGCAGCCGGACGGAGAGACACCAGGACTAGCAATGTCTAGAGCCTTTGGAGATTACTGTGTGAAGGACTTTGGTCTCATTTCTGTGCCTGAAGTGTCACAGAGAAATATAACAAGCAGGGATCAGTTTGTTGTGTTGGCGACTGATGGGGTTTGGGATGTTGTTTCAAATCAAGAAGCCGTACAGATTGTAAGCTCCACTGCAGAGCGGGGGAAGGCTGCGAAGCGTCTGGTGGAGTTCGCTGCGCGTGCATGGAAGCGCAAGAGGAGGGGAATCGCGATGGACGACATTTCTGCTATTTGCCTCTTCTTTCACTCCACTTCCCCTCTGGCTGAATCCCAGCAAGTTCACCCATTTAGTATTGCCACCCCAAAATAG

Protein Analysis

373

Amino Acids

41.11

Weight (kDa)

6.2

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 136 - 330 5e-41 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 625
AccBSI CCGCTC 1 cut(s) 949
AccII CGCG 5 cut(s) 37, 588, 702, 988, 1019
AciI CCGC 5 cut(s) 27, 37, 519, 674, 949
AclWI GGATC 4 cut(s) 130, 395, 408, 870
AcoI YGGCCR 1 cut(s) 597
AcuI CTGAAG 1 cut(s) 852
AfaI GTAC 1 cut(s) 924
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 5 cut(s) 52, 174, 652, 689, 909
AjnI CCWGG 2 cut(s) 222, 763
AluBI AGCT 7 cut(s) 95, 380, 484, 556, 621, 637, 936
AluI AGCT 7 cut(s) 95, 380, 484, 556, 621, 637, 936
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 3 cut(s) 365, 752, 821
AlwI GGATC 4 cut(s) 130, 395, 408, 870
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 6 cut(s) 95, 231, 467, 745, 959, 983
Asp700I GAANNNNTTC 1 cut(s) 505
AspLEI GCGC 5 cut(s) 37, 467, 590, 988, 1002
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 2 cut(s) 398, 726
AsuHPI GGTGA 2 cut(s) 416, 1082
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 666
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 558
BauI CACGAG 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 6 cut(s) 82, 218, 454, 757, 946, 970
BccI CCATC 3 cut(s) 161, 881, 1015
BceAI ACGGC 1 cut(s) 905
BcgI CGANNNNNNTGC 2 cut(s) 1016, 1050
BciT130I CCWGG 2 cut(s) 224, 765
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 2 cut(s) 398, 726
BcoDI GTCTC 3 cut(s) 365, 752, 821
BfaI CTAG 4 cut(s) 377, 657, 770, 780
BfmI CTRYAG 2 cut(s) 96, 942
BisI GCNGC 6 cut(s) 96, 232, 468, 746, 960, 984
BlsI GCNGC 6 cut(s) 97, 233, 469, 747, 961, 985
Bme1390I CCNGG 4 cut(s) 224, 398, 726, 765
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 3 cut(s) 257, 402, 627
BmrFI CCNGG 4 cut(s) 224, 398, 726, 765
BmsI GCATC 1 cut(s) 502
BoxI GACNNNNGTC 1 cut(s) 813
BpuMI CCSGG 2 cut(s) 398, 726
Bsa29I ATCGAT 1 cut(s) 504
BsaI GGTCTC 2 cut(s) 365, 821
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 628
Bse21I CCTNAGG 1 cut(s) 666
Bse3DI GCAATG 3 cut(s) 111, 700, 780
BseBI CCWGG 2 cut(s) 224, 765
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 904
BseMI GCAATG 3 cut(s) 111, 700, 780
BseMII CTCAG 2 cut(s) 524, 680
BseRI GAGGAG 2 cut(s) 105, 1021
BseXI GCAGC 6 cut(s) 82, 218, 454, 757, 946, 970
BseYI CCCAGC 1 cut(s) 1080
BsgI GTGCAG 1 cut(s) 379
Bsh1236I CGCG 5 cut(s) 37, 588, 702, 988, 1019
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 599
BshNI GGYRCC 1 cut(s) 625
BshVI ATCGAT 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 558
BsiSI CCGG 5 cut(s) 81, 398, 629, 725, 749
BslFI GGGAC 2 cut(s) 321, 380
BsmAI GTCTC 3 cut(s) 365, 752, 821
BsmFI GGGAC 2 cut(s) 321, 380
BsnI GGCC 1 cut(s) 599
Bso31I GGTCTC 2 cut(s) 365, 821
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 5 cut(s) 135, 327, 400, 475, 862
Bsp19I CCATGG 1 cut(s) 302
Bsp68I TCGCGA 1 cut(s) 1019
BspACI CCGC 5 cut(s) 27, 37, 519, 674, 949
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 2 cut(s) 525, 679
BspDI ATCGAT 1 cut(s) 504
BspFNI CGCG 5 cut(s) 37, 588, 702, 988, 1019
BspLI GGNNCC 3 cut(s) 257, 402, 627
BspMAI CTGCAG 2 cut(s) 100, 946
BspPI GGATC 4 cut(s) 130, 395, 408, 870
BspQI GCTCTTC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 625
BspTNI GGTCTC 2 cut(s) 365, 821
BsrBI CCGCTC 1 cut(s) 949
BsrDI GCAATG 3 cut(s) 111, 700, 780
BsrFI RCCGGY 1 cut(s) 628
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 5 cut(s) 135, 327, 400, 475, 862
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 2 cut(s) 224, 765
Bst4CI ACNGT 2 cut(s) 643, 800
Bst6I CTCTTC 2 cut(s) 151, 1052
BstC8I GCNNGC 4 cut(s) 29, 33, 554, 990
BstDEI CTNAG 2 cut(s) 533, 666
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 904
BstFNI CGCG 5 cut(s) 37, 588, 702, 988, 1019
BstHHI GCGC 5 cut(s) 37, 467, 590, 988, 1002
BstKTI GATC 5 cut(s) 138, 330, 403, 478, 865
BstMAI GTCTC 3 cut(s) 365, 752, 821
BstMBI GATC 5 cut(s) 135, 327, 400, 475, 862
BstMCI CGRYCG 1 cut(s) 41
BstNI CCWGG 2 cut(s) 224, 765
BstPAI GACNNNNGTC 1 cut(s) 813
BstSCI CCNGG 4 cut(s) 222, 396, 724, 763
BstSFI CTRYAG 2 cut(s) 96, 942
BstUI CGCG 5 cut(s) 37, 588, 702, 988, 1019
BstV1I GCAGC 6 cut(s) 82, 218, 454, 757, 946, 970
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 504
Bsu36I CCTNAGG 1 cut(s) 666
BsuRI GGCC 1 cut(s) 599
BsuTUI ATCGAT 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 1034
BtsCI GGATG 1 cut(s) 904
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 1 cut(s) 939
BtuMI TCGCGA 1 cut(s) 1019
Cac8I GCNNGC 4 cut(s) 29, 33, 554, 990
CfoI GCGC 5 cut(s) 37, 467, 590, 988, 1002
Cfr10I RCCGGY 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 504
CseI GACGC 2 cut(s) 708, 956
Csp6I GTAC 1 cut(s) 923
CspCI CAANNNNNGTGG 2 cut(s) 722, 757
CviAII CATG 5 cut(s) 19, 133, 296, 303, 993
CviQI GTAC 1 cut(s) 923
DdeI CTNAG 2 cut(s) 533, 666
DpnI GATC 5 cut(s) 137, 329, 402, 477, 864
DpnII GATC 5 cut(s) 135, 327, 400, 475, 862
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 2 cut(s) 151, 1052
EarI CTCTTC 2 cut(s) 151, 1052
EciI GGCGGA 1 cut(s) 689
Ecl136II GAGCTC 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 558
Eco31I GGTCTC 2 cut(s) 365, 821
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 852
Eco81I CCTNAGG 1 cut(s) 666
EcoICRI GAGCTC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 222, 763
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 5 cut(s) 22, 136, 299, 306, 996
FaqI GGGAC 2 cut(s) 321, 380
FatI CATG 5 cut(s) 18, 132, 295, 302, 992
FauI CCCGC 2 cut(s) 20, 942
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 6 cut(s) 96, 232, 468, 746, 960, 984
FokI GGATG 1 cut(s) 911
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 6 cut(s) 96, 232, 468, 746, 960, 984
FspBI CTAG 4 cut(s) 377, 657, 770, 780
GlaI GCGC 5 cut(s) 36, 466, 589, 987, 1001
GluI GCNGC 6 cut(s) 96, 232, 468, 746, 960, 984
GsaI CCCAGC 1 cut(s) 1084
HaeIII GGCC 1 cut(s) 599
HapII CCGG 5 cut(s) 81, 398, 629, 725, 749
HgaI GACGC 2 cut(s) 708, 956
HhaI GCGC 5 cut(s) 37, 467, 590, 988, 1002
Hin1II CATG 5 cut(s) 22, 136, 299, 306, 996
Hin6I GCGC 5 cut(s) 35, 465, 588, 986, 1000
HinP1I GCGC 5 cut(s) 35, 465, 588, 986, 1000
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 619
HinfI GANTC 7 cut(s) 216, 446, 501, 506, 581, 1014, 1076
HpaII CCGG 5 cut(s) 81, 398, 629, 725, 749
HphI GGTGA 2 cut(s) 416, 1082
Hpy166II GTNNAC 2 cut(s) 220, 1090
Hpy188I TCNGA 2 cut(s) 332, 545
Hpy188III TCNNGA 7 cut(s) 196, 404, 479, 668, 780, 914, 1018
Hpy8I GTNNAC 2 cut(s) 220, 1090
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 5 cut(s) 49, 106, 436, 799, 949
HpyCH4III ACNGT 2 cut(s) 643, 800
HpyCH4V TGCA 6 cut(s) 86, 98, 360, 733, 944, 992
HpyF3I CTNAG 2 cut(s) 533, 666
Hsp92II CATG 5 cut(s) 22, 136, 299, 306, 996
HspAI GCGC 5 cut(s) 35, 465, 588, 986, 1000
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 5 cut(s) 135, 327, 400, 475, 862
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 4, 92, 941
Lsp1109I GCAGC 6 cut(s) 82, 218, 454, 757, 946, 970
LweI GCATC 1 cut(s) 502
MaeI CTAG 4 cut(s) 377, 657, 770, 780
MaeIII GTNAC 2 cut(s) 422, 837
MalI GATC 5 cut(s) 137, 329, 402, 477, 864
MbiI CCGCTC 1 cut(s) 949
MboI GATC 5 cut(s) 135, 327, 400, 475, 862
MboII GAAGA 7 cut(s) 64, 73, 133, 136, 138, 275, 1039
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 558
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 2 cut(s) 178, 684
MluI ACGCGT 1 cut(s) 700
MluNI TGGCCA 1 cut(s) 599
MlyI GAGTC 1 cut(s) 225
Mox20I TGGCCA 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 505
MscI TGGCCA 1 cut(s) 599
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 824
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 27, 519
MspI CCGG 5 cut(s) 81, 398, 629, 725, 749
MspR9I CCNGG 4 cut(s) 224, 398, 726, 765
MvaI CCWGG 2 cut(s) 224, 765
MvnI CGCG 5 cut(s) 37, 588, 702, 988, 1019
NciI CCSGG 2 cut(s) 398, 726
NcoI CCATGG 1 cut(s) 302
NdeII GATC 5 cut(s) 135, 327, 400, 475, 862
NlaIII CATG 5 cut(s) 22, 136, 299, 306, 996
NlaIV GGNNCC 3 cut(s) 257, 402, 627
NmuCI GTSAC 2 cut(s) 422, 837
NruI TCGCGA 1 cut(s) 1019
PciSI GCTCTTC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 1023
PdmI GAANNNNTTC 1 cut(s) 505
PfeI GAWTC 6 cut(s) 446, 501, 506, 581, 1014, 1076
PfoI TCCNGGA 1 cut(s) 396
PkrI GCNGC 6 cut(s) 97, 233, 469, 747, 961, 985
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 813
Psp124BI GAGCTC 1 cut(s) 558
Psp6I CCWGG 2 cut(s) 222, 763
PspFI CCCAGC 1 cut(s) 1080
PspGI CCWGG 2 cut(s) 222, 763
PspN4I GGNNCC 3 cut(s) 257, 402, 627
PspPI GGNCC 1 cut(s) 299
PstI CTGCAG 2 cut(s) 100, 946
PsuI RGATCY 1 cut(s) 400
RruI TCGCGA 1 cut(s) 1019
RsaI GTAC 1 cut(s) 924
RsaNI GTAC 1 cut(s) 923
RseI CAYNNNNRTG 1 cut(s) 824
SacI GAGCTC 1 cut(s) 558
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 6 cut(s) 96, 232, 468, 746, 960, 984
Sau3AI GATC 5 cut(s) 135, 327, 400, 475, 862
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 4 cut(s) 224, 398, 726, 765
SduI GDGCHC 1 cut(s) 558
SetI ASST 7 cut(s) 97, 382, 486, 558, 623, 639, 938
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 2 cut(s) 96, 942
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 824
Sse9I AATT 2 cut(s) 178, 684
SsiI CCGC 5 cut(s) 27, 37, 519, 674, 949
SspMI CTAG 4 cut(s) 377, 657, 770, 780
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 4 cut(s) 222, 396, 724, 763
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 643, 800
TaqI TCGA 5 cut(s) 165, 197, 288, 504, 645
TasI AATT 2 cut(s) 178, 684
TfiI GAWTC 6 cut(s) 446, 501, 506, 581, 1014, 1076
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 2 cut(s) 422, 837
TseI GCWGC 6 cut(s) 95, 231, 467, 745, 959, 983
Tsp45I GTSAC 2 cut(s) 422, 837
TspDTI ATGAA 1 cut(s) 553
TspGWI ACGGA 2 cut(s) 630, 768
TspRI CASTG 1 cut(s) 946
VpaK11BI GGWCC 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 1066
XmnI GAANNNNTTC 1 cut(s) 505
XspI CTAG 4 cut(s) 377, 657, 770, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.