Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

22659826 .. 22662616

Gene Structure 2791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGTGCTTTTTCCATCTTTCCTTGATGGATTGGGAAGAACCATCTCGAACAAGAAGACAAAGAATTGCCATAATGATGTGGCAAAGGAGACTGCAGAAGCATTGGCAAAGGAAGCAAAAAAGAATGAGCTGGTTTTGAGTTCTTCTGGGATTGTTAATTCTGACAAGTCTAACAATTTTTCTTCTATTTGCTCCAAGAGAGGCCAAAAGGGTATCAATCAGGATTGCTTGGTCATATGGGAGGAATTTGGGTGCCAAGAAGACATGATCTTTTGTGGAGTGTTTGATGGGCATGGACAATGGGGACATCTAGTTAGCAGAAGGGTCAGGCAGTCTATGCCTTCTTCTCTGTTGTGCAATTGGCAAGAAACTCTCAGTTTAACATCACTTGACCTGAATTTTAAAATGGAGATGGATCGGAAACTCCATCGATACAATACATGGAAGCAATCCTTTCTTAAAACATATGCTGCCATAGACCAGGAGCTTAAGCATTCTTCTAAAATCGATTCCTATCGAAGTGGTACTACAGCGCTGACAATTATTAAGCAGGGTGAACTTCTCATCACAGCACATGTGGGCGACTCTCGAGCTGTTTTGGCCACCACTTCAGAAGATGGAAGCTTGGTACCTGTCCAGCTTACAGTCGATTTCAAGCCTAACTTGCCTCAGGAGGCTGAGAGAATCAGAAGGTCCAATGGACGAGTGTTTTGTCTACCTGATGAACCGGGCACTTACAGGGTGTGGATGCCAAACGGGAAGACACCTGGACTGGCAGTATCCAGAGCTTTTGGTGACTATTGTGTTAAGGACTTTGGGCTTATTTCTGTGCCTGATGTGAGCCAAAGATACATAACCAGAAAAGACCTGTTTGTCATTTTAGCAACAGATGGGGTATGGGATGTTATCTCCAACAAAGAAGCTATACAAATAGTTTCTTCAGCACCAGATAGGAACAAAGCAGCAAAAAGATTGGTGGCATGTGCTGCTCTTGCATGGAAGTCAAAGAGAAGAGGCATTGCAATGGATGACATCTCTGCTATTTGCCTCTTCTTTAACCCTAACTCATCATCACACCAAACCAACCCTCTGGTCTCTGAATATCCTGGTGTGAAGAAATCTGGGTGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

378

Amino Acids

41.91

Weight (kDa)

8.95

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	83 - 299	3.5e-32	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	872
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	2 cut(s)	252, 628
AccI	GTMKAC	1 cut(s)	715
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	2 cut(s)	245, 397
AcuI	CTGAAG	2 cut(s)	594, 924
AfaI	GTAC	2 cut(s)	526, 630
AfeI	AGCGCT	1 cut(s)	534
AflII	CTTAAG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	1 cut(s)	655
AjnI	CCWGG	3 cut(s)	480, 766, 1105
AluBI	AGCT	7 cut(s)	130, 487, 593, 624, 640, 788, 923
AluI	AGCT	7 cut(s)	130, 487, 593, 624, 640, 788, 923
Alw26I	GTCTC	2 cut(s)	83, 1099
AlwI	GGATC	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	588
Aor51HI	AGCGCT	1 cut(s)	534
AoxI	GGCC	2 cut(s)	202, 600
ApeKI	GCWGC	3 cut(s)	470, 962, 986
ApoI	RAATTY	2 cut(s)	245, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	693, 725
Asp718I	GGTACC	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	693
AsuC2I	CCSGG	1 cut(s)	729
AsuHPI	GGTGA	2 cut(s)	566, 806
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	693
AxyI	CCTNAGG	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	602
BanI	GGYRCC	2 cut(s)	252, 628
BarI	GAAGNNNNNNTAC	2 cut(s)	511, 543
BbsI	GAAGAC	3 cut(s)	62, 267, 767
BbvI	GCAGC	3 cut(s)	457, 973, 974
BccI	CCATC	8 cut(s)	20, 22, 50, 281, 406, 435, 611, 884
BciT130I	CCWGG	3 cut(s)	482, 768, 1107
BciVI	GTATCC	1 cut(s)	790
BcnI	CCSGG	1 cut(s)	729
BcoDI	GTCTC	2 cut(s)	83, 1099
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	2 cut(s)	93, 528
BfoI	RGCGCY	1 cut(s)	536
BfrI	CTTAAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	790
BisI	GCNGC	3 cut(s)	471, 963, 987
BlsI	GCNGC	3 cut(s)	472, 964, 988
Bme1390I	CCNGG	4 cut(s)	482, 729, 768, 1107
Bme18I	GGWCC	1 cut(s)	693
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	2 cut(s)	254, 630
BmrFI	CCNGG	4 cut(s)	482, 729, 768, 1107
BmsI	GCATC	1 cut(s)	738
BpiI	GAAGAC	3 cut(s)	62, 267, 767
BpuMI	CCSGG	1 cut(s)	729
Bsa29I	ATCGAT	2 cut(s)	430, 507
BsaBI	GATNNNNATC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	1099
Bse1I	ACTGG	1 cut(s)	777
Bse21I	CCTNAGG	1 cut(s)	669
Bse3DI	GCAATG	2 cut(s)	1017, 1029
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	3 cut(s)	482, 768, 1107
BseCI	ATCGAT	2 cut(s)	430, 507
BseGI	GGATG	3 cut(s)	753, 907, 1033
BseJI	GATNNNNATC	1 cut(s)	513
BseMI	GCAATG	2 cut(s)	1017, 1029
BseMII	CTCAG	3 cut(s)	388, 669, 683
BseNI	ACTGG	1 cut(s)	777
BseSI	GKGCMC	1 cut(s)	734
BseXI	GCAGC	3 cut(s)	457, 973, 974
BshFI	GGCC	2 cut(s)	204, 602
BshNI	GGYRCC	2 cut(s)	252, 628
BshVI	ATCGAT	2 cut(s)	430, 507
BsiHKCI	CYCGRG	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	728
BslFI	GGGAC	1 cut(s)	318
BsmAI	GTCTC	2 cut(s)	83, 1099
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	204, 602
Bso31I	GGTCTC	1 cut(s)	1099
BsoBI	CYCGRG	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	734
Bsp143I	GATC	2 cut(s)	267, 415
BspANI	GGCC	2 cut(s)	204, 602
BspCNI	CTCAG	3 cut(s)	387, 670, 682
BspDI	ATCGAT	2 cut(s)	430, 507
BspLI	GGNNCC	2 cut(s)	254, 630
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	423
BspT107I	GGYRCC	2 cut(s)	252, 628
BspTI	CTTAAG	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	1099
BsrDI	GCAATG	2 cut(s)	1017, 1029
BsrI	ACTGG	1 cut(s)	777
BssMI	GATC	2 cut(s)	267, 415
Bst2UI	CCWGG	3 cut(s)	482, 768, 1107
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	2 cut(s)	1006, 1055
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	2 cut(s)	337, 986
BstDEI	CTNAG	3 cut(s)	374, 669, 678
BstF5I	GGATG	3 cut(s)	753, 907, 1033
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	2 cut(s)	270, 418
BstMAI	GTCTC	2 cut(s)	83, 1099
BstMBI	GATC	2 cut(s)	267, 415
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 337, 599, 664, 986, 992
BstNI	CCWGG	3 cut(s)	482, 768, 1107
BstNSI	RCATGY	2 cut(s)	578, 984
BstSCI	CCNGG	4 cut(s)	480, 727, 766, 1105
BstSFI	CTRYAG	2 cut(s)	93, 528
BstSLI	GKGCMC	1 cut(s)	734
BstV1I	GCAGC	3 cut(s)	457, 973, 974
BstV2I	GAAGAC	3 cut(s)	62, 267, 767
BstXI	CCANNNNNNTGG	1 cut(s)	1090
Bsu15I	ATCGAT	2 cut(s)	430, 507
Bsu36I	CCTNAGG	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	2 cut(s)	204, 602
BsuTUI	ATCGAT	2 cut(s)	430, 507
BtsCI	GGATG	3 cut(s)	753, 907, 1033
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	693
ClaI	ATCGAT	2 cut(s)	430, 507
Csp6I	GTAC	2 cut(s)	525, 629
CviAII	CATG	6 cut(s)	265, 293, 441, 575, 981, 996
CviQI	GTAC	2 cut(s)	525, 629
DdeI	CTNAG	3 cut(s)	374, 669, 678
DpnI	GATC	2 cut(s)	269, 417
DpnII	GATC	2 cut(s)	267, 415
DraI	TTTAAA	1 cut(s)	403
DrdI	GACNNNNNNGTC	1 cut(s)	872
DseDI	GACNNNNNNGTC	1 cut(s)	872
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	2 cut(s)	1006, 1055
EarI	CTCTTC	2 cut(s)	1006, 1055
Eco31I	GGTCTC	1 cut(s)	1099
Eco47I	GGWCC	1 cut(s)	693
Eco47III	AGCGCT	1 cut(s)	534
Eco57I	CTGAAG	2 cut(s)	594, 924
Eco81I	CCTNAGG	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	588
EcoRII	CCWGG	3 cut(s)	480, 766, 1105
FaeI	CATG	6 cut(s)	268, 296, 444, 578, 984, 999
FalI	AAGNNNNNCTT	4 cut(s)	437, 469, 647, 679
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	6 cut(s)	264, 292, 440, 574, 980, 995
FauNDI	CATATG	2 cut(s)	236, 466
FblI	GTMKAC	1 cut(s)	715
Fnu4HI	GCNGC	3 cut(s)	471, 963, 987
FokI	GGATG	3 cut(s)	760, 914, 1040
Fsp4HI	GCNGC	3 cut(s)	471, 963, 987
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	3 cut(s)	471, 963, 987
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	204, 602
HapII	CCGG	1 cut(s)	728
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	6 cut(s)	268, 296, 444, 578, 984, 999
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	3 cut(s)	509, 584, 684
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	2 cut(s)	566, 806
Hpy166II	GTNNAC	2 cut(s)	557, 716
Hpy188I	TCNGA	5 cut(s)	163, 420, 613, 689, 1099
Hpy188III	TCNNGA	5 cut(s)	46, 221, 588, 671, 783
Hpy8I	GTNNAC	2 cut(s)	557, 716
HpyAV	CCTTC	3 cut(s)	315, 351, 684
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4V	TGCA	4 cut(s)	95, 357, 995, 1022
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 337, 599, 664, 986, 992
HpyF3I	CTNAG	3 cut(s)	374, 669, 678
Hsp92II	CATG	6 cut(s)	268, 296, 444, 578, 984, 999
HspAI	GCGC	1 cut(s)	533
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	2 cut(s)	267, 415
LmnI	GCTCC	2 cut(s)	197, 484
Lsp1109I	GCAGC	3 cut(s)	457, 973, 974
LweI	GCATC	1 cut(s)	738
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	2 cut(s)	269, 417
MboI	GATC	2 cut(s)	267, 415
MfeI	CAATTG	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	734
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	7 cut(s)	64, 157, 175, 245, 358, 397, 540
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	936
MnlI	CCTC	7 cut(s)	194, 235, 667, 678, 1007, 1058, 1098
Mox20I	TGGCCA	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	8 cut(s)	156, 380, 402, 459, 489, 546, 807, 1056
MslI	CAYNNNNRTG	2 cut(s)	75, 1022
Msp20I	TGGCCA	1 cut(s)	602
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	4 cut(s)	482, 729, 768, 1107
MunI	CAATTG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	3 cut(s)	482, 768, 1107
MwoI	GCNNNNNNNGC	6 cut(s)	113, 337, 599, 664, 986, 992
NciI	CCSGG	1 cut(s)	729
NdeI	CATATG	2 cut(s)	236, 466
NdeII	GATC	2 cut(s)	267, 415
NlaIII	CATG	6 cut(s)	268, 296, 444, 578, 984, 999
NlaIV	GGNNCC	2 cut(s)	254, 630
NmuCI	GTSAC	1 cut(s)	794
NspI	RCATGY	2 cut(s)	578, 984
PaeR7I	CTCGAG	1 cut(s)	588
PciI	ACATGT	1 cut(s)	574
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	509, 684
PkrI	GCNGC	3 cut(s)	472, 964, 988
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PscI	ACATGT	1 cut(s)	574
Psp6I	CCWGG	3 cut(s)	480, 766, 1105
PspGI	CCWGG	3 cut(s)	480, 766, 1105
PspN4I	GGNNCC	2 cut(s)	254, 630
PspPI	GGNCC	1 cut(s)	693
PstI	CTGCAG	1 cut(s)	97
RsaI	GTAC	2 cut(s)	526, 630
RsaNI	GTAC	2 cut(s)	525, 629
RseI	CAYNNNNRTG	2 cut(s)	75, 1022
SaqAI	TTAA	8 cut(s)	156, 380, 402, 459, 489, 546, 807, 1056
SatI	GCNGC	3 cut(s)	471, 963, 987
Sau3AI	GATC	2 cut(s)	267, 415
Sau96I	GGNCC	1 cut(s)	693
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	4 cut(s)	482, 729, 768, 1107
SduI	GDGCHC	1 cut(s)	734
SfaNI	GCATC	1 cut(s)	738
SfcI	CTRYAG	2 cut(s)	93, 528
Sfr274I	CTCGAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	693
SlaI	CTCGAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	2 cut(s)	75, 1022
SmlI	CTYRAG	2 cut(s)	488, 588
SmoI	CTYRAG	2 cut(s)	488, 588
Sse9I	AATT	7 cut(s)	64, 157, 175, 245, 358, 397, 540
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	4 cut(s)	480, 727, 766, 1105
TaaI	ACNGT	1 cut(s)	646
TaqI	TCGA	6 cut(s)	47, 430, 507, 517, 589, 648
TasI	AATT	7 cut(s)	64, 157, 175, 245, 358, 397, 540
TfiI	GAWTC	2 cut(s)	509, 684
Tru1I	TTAA	8 cut(s)	156, 380, 402, 459, 489, 546, 807, 1056
Tru9I	TTAA	8 cut(s)	156, 380, 402, 459, 489, 546, 807, 1056
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	3 cut(s)	470, 962, 986
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	1 cut(s)	738
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	693
XapI	RAATTY	2 cut(s)	245, 397
XceI	RCATGY	2 cut(s)	578, 984
XhoI	CTCGAG	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	715
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.