Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

32931880 .. 32932195

Gene Structure 316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGGAGATTGTTGGAGAAGATGGAGAACTAAAGCCGGGTATGCAAGTATATTCTGATGATGAAGCTTATAATCTATACAATAATTATGCTTTGAAAAAAGGATTTAGTATTCGTAAAGGGCATATAAGAAGAGATGCATCAGAGGGGTTTGCAAAAGACCAAGATACATTTGAACAGAAAAGATATAAGAAGTTAGAGACAAGAACCGGTTGCAAGGCTATGATTGTATTCAGGCTCGGCCTTGAGACATTCAAGGCCCGGGGCGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

91

Amino Acids

10.55

Weight (kDa)

6.61

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	26 - 80	3.5e-06	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	3 cut(s)	97, 176, 256
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	194, 242
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	2 cut(s)	241, 258
AsiGI	ACCGGT	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	3 cut(s)	39, 262, 263
AvaI	CYCGRG	1 cut(s)	261
BccI	CCATC	1 cut(s)	17
BcnI	CCSGG	3 cut(s)	39, 262, 263
BcoDI	GTCTC	2 cut(s)	194, 242
Bme1390I	CCNGG	3 cut(s)	39, 262, 263
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	3 cut(s)	39, 262, 263
BmsI	GCATC	2 cut(s)	127, 149
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	3 cut(s)	39, 262, 263
BsaJI	CCNNGG	2 cut(s)	261, 262
BsaWI	WCCGGW	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	261, 262
BseRI	GAGGAG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	243, 260
BshTI	ACCGGT	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	38, 210, 262
BsmAI	GTCTC	2 cut(s)	194, 242
BsnI	GGCC	2 cut(s)	243, 260
BsoBI	CYCGRG	1 cut(s)	261
BspANI	GGCC	2 cut(s)	243, 260
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	261, 262
Bst6I	CTCTTC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	194, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	37, 260, 261
BsuRI	GGCC	2 cut(s)	243, 260
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	259
Cfr9I	CCCGGG	1 cut(s)	261
CspAI	ACCGGT	1 cut(s)	209
CviJI	RGCY	6 cut(s)	37, 68, 221, 238, 243, 260
CviKI_1	RGCY	6 cut(s)	37, 68, 221, 238, 243, 260
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	142
FaiI	YATR	9 cut(s)	44, 52, 72, 79, 90, 126, 128, 189, 224
HaeIII	GGCC	2 cut(s)	243, 260
HapII	CCGG	3 cut(s)	38, 210, 262
HindIII	AAGCTT	1 cut(s)	66
HpaII	CCGG	3 cut(s)	38, 210, 262
Hpy188I	TCNGA	2 cut(s)	58, 145
HpyCH4V	TGCA	4 cut(s)	46, 140, 155, 216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	51, 220, 223
LweI	GCATC	2 cut(s)	127, 149
MboII	GAAGA	2 cut(s)	32, 144
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	1 cut(s)	139
Mph1103I	ATGCAT	1 cut(s)	142
MspI	CCGG	3 cut(s)	38, 210, 262
MspR9I	CCNGG	3 cut(s)	39, 262, 263
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	3 cut(s)	39, 262, 263
NmeAIII	GCCGAG	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	142
PinAI	ACCGGT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	39, 262, 263
SetI	ASST	1 cut(s)	70
SfaNI	GCATC	2 cut(s)	127, 149
SmaI	CCCGGG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	85
StyD4I	CCNGG	3 cut(s)	37, 260, 261
TasI	AATT	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	78
TspMI	CCCGGG	1 cut(s)	261
XmaI	CCCGGG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.