Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Forward (+)

10107644 .. 10109859

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGTGCTATTTCCATATCTTCTTGAAGGGCTGGCAAGAACCAGATCGCTCAAGAAAATGAAGAATTGTCATGAAGATGTTGCAAGGAAAACTGCAGAAGCATTGGAAAAGGAAGCGAAAAAGAATGAGCTGGTTTTGAGTTCTTCTTCTGGCATTGTTATGTCTGATAAGTCTAACAATTTTTCCTCTGTTTGCTCCAAGAGAGGCCAGAAAGGGATCAATCAAGATTGCTTAATCATTTGGGAGGAATTTGGATGCCAAGAGGACATGATCTTTTGTGGGATATTTGATGGGCATGGCCAATGGGGCCACCATGTTAGCAAAAGGGTCAAGGAATCAATGCCTGCTTCTTTGTTGTGCAATTGGCAAGAGACTCTCACTTTAGCATCACTGAACCTCGACTTCGAAATGGAGATGGATAGAAACCTCCATCGGTTTGATATATGGAAGCAATCCTTTCTTAAGACGTATGCTGCCATTGACCAGGAGCTCAAGCATTCTTCTAAAATGGATTCTTATCGAAGTGGCGCTACAGCATCAACAATTGTTAAGCAGGGCGAACATCTCATCGTCGCAAATGTCGGTGACTCCCGGGCTGTCTTGGCCTCCATTTCAGAAGATGGGAGTTTGGTACCTCTTCAGCTTACAGTGGACTTTAAACCCAATATACCTCAGGAGGCAGAACGAATAACAAGATCCAATGGACGAGTATTTTGCTTACATGATGAACCAGGGACTTACAGGGTCTGGATGCCAAATGGTAAGACACCAGGACTGGCAATATCAAGAGCCTTTGGCGACTATTGTGTTAAGGATTTTGGGCTTATCTCAGTGCCTGCTGTCAGTCAAAGGCATATCACCAGCAGAGACCAGTTTGTCATTCTAGCAACAGACGGGGTATGGGATGTTATCTCCAACGAAGAAGCTGTACAGATAGTTTCCTCCACTCCAGATAGGAAAAAAGCAGCTAAAAGGCTTGTGGGATGTGCCACTCTTGCATGGAAGTCTAAGAAACGAGGCATCGCCATGGATGACATCTCAGCTATTTGCCTCTTCTTTCACGCTTCATCCTCACAACATGCCAACCTTATGATCTCACAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

369

Amino Acids

41.04

Weight (kDa)

8.0

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	875
Acc65I	GGTACC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	631
AclWI	GGATC	2 cut(s)	224, 690
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	2 cut(s)	633, 930
AflII	CTTAAG	1 cut(s)	461
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	3 cut(s)	483, 730, 769
AluBI	AGCT	6 cut(s)	130, 490, 643, 926, 968, 1043
AluI	AGCT	6 cut(s)	130, 490, 643, 926, 968, 1043
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	365, 861
AlwI	GGATC	2 cut(s)	224, 690
AlwNI	CAGNNNCTG	2 cut(s)	747, 836
Ama87I	CYCGRG	1 cut(s)	591
AoxI	GGCC	4 cut(s)	205, 298, 307, 603
ApeKI	GCWGC	2 cut(s)	473, 965
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	696, 728
Asp718I	GGTACC	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	2 cut(s)	592, 593
AsuHPI	GGTGA	2 cut(s)	596, 850
AsuII	TTCGAA	1 cut(s)	405
AvaI	CYCGRG	1 cut(s)	591
AxyI	CCTNAGG	1 cut(s)	672
BalI	TGGCCA	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	492
BarI	GAAGNNNNNNTAC	4 cut(s)	514, 546, 912, 944
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	460, 977
BccI	CCATC	4 cut(s)	284, 409, 438, 614
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	3 cut(s)	485, 732, 771
BcnI	CCSGG	2 cut(s)	592, 593
BcoDI	GTCTC	2 cut(s)	365, 861
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	2 cut(s)	93, 531
BfoI	RGCGCY	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	461
BglI	GCCNNNNNGGC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	474, 966
BlsI	GCNGC	2 cut(s)	475, 967
Bme1390I	CCNGG	5 cut(s)	485, 592, 593, 732, 771
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	308, 633
BmrFI	CCNGG	5 cut(s)	485, 592, 593, 732, 771
BmsI	GCATC	5 cut(s)	245, 395, 545, 741, 1029
BpmI	CTGGAG	1 cut(s)	933
Bpu14I	TTCGAA	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	35, 476
BpuMI	CCSGG	2 cut(s)	592, 593
BsaBI	GATNNNNATC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	3 cut(s)	591, 731, 1026
Bse1I	ACTGG	2 cut(s)	780, 871
Bse21I	CCTNAGG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	3 cut(s)	485, 732, 771
BseDI	CCNNGG	3 cut(s)	591, 731, 1026
BseGI	GGATG	6 cut(s)	260, 756, 910, 989, 1036, 1067
BseJI	GATNNNNATC	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	686, 843, 1053
BseNI	ACTGG	2 cut(s)	780, 871
BseXI	GCAGC	2 cut(s)	460, 977
BshFI	GGCC	4 cut(s)	207, 300, 309, 605
BshNI	GGYRCC	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	748
BsmAI	GTCTC	2 cut(s)	365, 861
BsmFI	GGGAC	1 cut(s)	748
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	4 cut(s)	207, 300, 309, 605
Bso31I	GGTCTC	1 cut(s)	861
BsoBI	CYCGRG	1 cut(s)	591
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	928
Bsp143I	GATC	5 cut(s)	44, 216, 270, 695, 1092
Bsp19I	CCATGG	1 cut(s)	1026
BspANI	GGCC	4 cut(s)	207, 300, 309, 605
BspCNI	CTCAG	3 cut(s)	685, 842, 1052
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	308, 633
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	2 cut(s)	224, 690
BspT104I	TTCGAA	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	631
BspTI	CTTAAG	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	861
BsrGI	TGTACA	1 cut(s)	928
BsrI	ACTGG	2 cut(s)	780, 871
BssECI	CCNNGG	3 cut(s)	591, 731, 1026
BssMI	GATC	5 cut(s)	44, 216, 270, 695, 1092
BssT1I	CCWWGG	1 cut(s)	1026
Bst2UI	CCWGG	3 cut(s)	485, 732, 771
Bst4CI	ACNGT	1 cut(s)	649
Bst6I	CTCTTC	2 cut(s)	642, 1058
BstAFI	CTTAAG	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	928
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	33, 345, 837
BstDEI	CTNAG	4 cut(s)	672, 829, 1008, 1039
BstDSI	CCRYGG	1 cut(s)	1026
BstF5I	GGATG	6 cut(s)	260, 756, 910, 989, 1036, 1067
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	5 cut(s)	47, 219, 273, 698, 1095
BstMAI	GTCTC	2 cut(s)	365, 861
BstMBI	GATC	5 cut(s)	44, 216, 270, 695, 1092
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 602, 995
BstNI	CCWGG	3 cut(s)	485, 732, 771
BstNSI	RCATGY	1 cut(s)	1082
BstSCI	CCNGG	5 cut(s)	483, 590, 591, 730, 769
BstSFI	CTRYAG	2 cut(s)	93, 531
BstV1I	GCAGC	2 cut(s)	460, 977
BstX2I	RGATCY	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	695
Bsu36I	CCTNAGG	1 cut(s)	672
BsuRI	GGCC	4 cut(s)	207, 300, 309, 605
BtgI	CCRYGG	1 cut(s)	1026
BtgZI	GCGATG	1 cut(s)	1006
BtsCI	GGATG	6 cut(s)	260, 756, 910, 989, 1036, 1067
BtsIMutI	CAGTG	3 cut(s)	389, 654, 837
Cac8I	GCNNGC	3 cut(s)	33, 345, 837
CaiI	CAGNNNCTG	2 cut(s)	747, 836
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	307
Cfr9I	CCCGGG	1 cut(s)	591
Csp6I	GTAC	2 cut(s)	632, 929
CviAII	CATG	8 cut(s)	71, 268, 296, 314, 722, 999, 1027, 1079
CviQI	GTAC	2 cut(s)	632, 929
DdeI	CTNAG	4 cut(s)	672, 829, 1008, 1039
DpnI	GATC	5 cut(s)	46, 218, 272, 697, 1094
DpnII	GATC	5 cut(s)	44, 216, 270, 695, 1092
DraI	TTTAAA	1 cut(s)	658
DrdI	GACNNNNNNGTC	1 cut(s)	875
DseDI	GACNNNNNNGTC	1 cut(s)	875
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	642, 1058
EarI	CTCTTC	2 cut(s)	642, 1058
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	1026
Eco24I	GRGCYC	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	861
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	623
Eco81I	CCTNAGG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	591
EcoICRI	GAGCTC	1 cut(s)	490
EcoRII	CCWGG	3 cut(s)	483, 730, 769
EcoT14I	CCWWGG	1 cut(s)	1026
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	1026
FaeI	CATG	8 cut(s)	74, 271, 299, 317, 725, 1002, 1030, 1082
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	8 cut(s)	70, 267, 295, 313, 721, 998, 1026, 1078
Fnu4HI	GCNGC	2 cut(s)	474, 966
FokI	GGATG	6 cut(s)	267, 763, 917, 996, 1043, 1054
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	2 cut(s)	474, 966
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	2 cut(s)	474, 966
GsuI	CTGGAG	1 cut(s)	933
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	4 cut(s)	207, 300, 309, 605
HapII	CCGG	1 cut(s)	592
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	8 cut(s)	74, 271, 299, 317, 725, 1002, 1030, 1082
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HinfI	GANTC	4 cut(s)	335, 373, 512, 587
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	2 cut(s)	596, 850
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	2 cut(s)	166, 616
Hpy188III	TCNNGA	8 cut(s)	23, 52, 71, 224, 674, 748, 786, 950
Hpy8I	GTNNAC	1 cut(s)	652
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	4 cut(s)	83, 95, 360, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 602, 995
HpyF3I	CTNAG	4 cut(s)	672, 829, 1008, 1039
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	8 cut(s)	74, 271, 299, 317, 725, 1002, 1030, 1082
HspAI	GCGC	1 cut(s)	528
KpnI	GGTACC	1 cut(s)	635
Kzo9I	GATC	5 cut(s)	44, 216, 270, 695, 1092
LmnI	GCTCC	2 cut(s)	200, 487
Lsp1109I	GCAGC	2 cut(s)	460, 977
LweI	GCATC	5 cut(s)	245, 395, 545, 741, 1029
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	5 cut(s)	46, 218, 272, 697, 1094
MboI	GATC	5 cut(s)	44, 216, 270, 695, 1092
MfeI	CAATTG	2 cut(s)	361, 543
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	6 cut(s)	64, 178, 248, 361, 543, 1102
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	367, 581
MmeI	TCCRAC	1 cut(s)	939
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	6 cut(s)	233, 462, 549, 657, 810, 1105
MslI	CAYNNNNRTG	3 cut(s)	75, 158, 1025
Msp20I	TGGCCA	1 cut(s)	300
MspCI	CTTAAG	1 cut(s)	461
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	5 cut(s)	485, 592, 593, 732, 771
MunI	CAATTG	2 cut(s)	361, 543
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	3 cut(s)	485, 732, 771
MwoI	GCNNNNNNNGC	3 cut(s)	306, 602, 995
NciI	CCSGG	2 cut(s)	592, 593
NcoI	CCATGG	1 cut(s)	1026
NdeII	GATC	5 cut(s)	44, 216, 270, 695, 1092
NlaIII	CATG	8 cut(s)	74, 271, 299, 317, 725, 1002, 1030, 1082
NlaIV	GGNNCC	2 cut(s)	308, 633
NmuCI	GTSAC	1 cut(s)	584
NspI	RCATGY	1 cut(s)	1082
NspV	TTCGAA	1 cut(s)	405
PagI	TCATGA	1 cut(s)	70
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	335, 512
PkrI	GCNGC	2 cut(s)	475, 967
PleI	GAGTC	2 cut(s)	367, 581
PpsI	GAGTC	2 cut(s)	367, 581
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	3 cut(s)	483, 730, 769
PspGI	CCWGG	3 cut(s)	483, 730, 769
PspN4I	GGNNCC	2 cut(s)	308, 633
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	2 cut(s)	747, 836
PsuI	RGATCY	1 cut(s)	695
RsaI	GTAC	2 cut(s)	633, 930
RsaNI	GTAC	2 cut(s)	632, 929
RseI	CAYNNNNRTG	3 cut(s)	75, 158, 1025
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	6 cut(s)	233, 462, 549, 657, 810, 1105
SatI	GCNGC	2 cut(s)	474, 966
Sau3AI	GATC	5 cut(s)	44, 216, 270, 695, 1092
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	367, 581
ScrFI	CCNGG	5 cut(s)	485, 592, 593, 732, 771
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	5 cut(s)	245, 395, 545, 741, 1029
SfcI	CTRYAG	2 cut(s)	93, 531
SfiI	GGCCNNNNNGGCC	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	405
SmaI	CCCGGG	1 cut(s)	593
SmiMI	CAYNNNNRTG	3 cut(s)	75, 158, 1025
SmlI	CTYRAG	3 cut(s)	50, 461, 491
SmoI	CTYRAG	3 cut(s)	50, 461, 491
Sse9I	AATT	6 cut(s)	64, 178, 248, 361, 543, 1102
SspMI	CTAG	1 cut(s)	884
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	5 cut(s)	483, 590, 591, 730, 769
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	3 cut(s)	399, 405, 520
TasI	AATT	6 cut(s)	64, 178, 248, 361, 543, 1102
TatI	WGTACW	1 cut(s)	928
TfiI	GAWTC	2 cut(s)	335, 512
Tru1I	TTAA	6 cut(s)	233, 462, 549, 657, 810, 1105
Tru9I	TTAA	6 cut(s)	233, 462, 549, 657, 810, 1105
TscAI	CASTG	3 cut(s)	396, 654, 837
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	2 cut(s)	473, 965
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	4 cut(s)	74, 87, 741, 1056
TspMI	CCCGGG	1 cut(s)	591
TspRI	CASTG	3 cut(s)	396, 654, 837
Vha464I	CTTAAG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	1082
XmaI	CCCGGG	1 cut(s)	591
XspI	CTAG	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.