Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

21458683 .. 21459986

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATATTTTGTGGGATTTTCGACGGGCATGGTCCATGGGGACATTTTGTGGCAAAACAGATAAGAGAAACAATGCCACCCTCTCTGTTGTGCTGTTGGCAAGAGACCCTAGCTCAAACTTCTATTGACCTGGATTCGGATAAAAGGTGTCACCGATTTAATATATGGAAGGATTCCTATATCAAAACTTGTGCTGCCATTGATCACGAGCTTGGACAGCATCGTAGAATCGATTCCTTTTACAGCGGAACAACTGCCCTGAGTATTGTCAGACAGGGCGAGCTCATTTTCATAGCAAATGTTGGCGATTCTCGCGCTGTTTTGGCCACAACTTTAGATGATGGAAGCTTGGTGCCGGTTCAGCTTACTGTCGATTTCAAGCCTAGTTTGCCTCAGGAGGCGGAGAGAATAATTCAAAGCAATGGACGCGTTTTCTGTTTAGATGATGAGCCGGGAGTGCAAAGGGTGTGGCAGCCGGACGGAGAGACACCAGGACTAGCAATGTCTAGAGCCTTTGGAGATTACTGTGTGAAGGACTTTGGTCTGATTTCTGTGCCTGAAGTGTCACAGAGAAATATAACAAGCAGAGATCAGTTTGTTGTGTTGGCAACTGATGGGGTTTGGGATGTGGTTTCAAATCAAGAAGCCGTGCAGATTGTAAGCTCGACTGCAGAGCCGGGGAAGGCTGCGAAGCGTCTGGTGGAGTTCGCTGCGCAAGCATGGAAGCGCAAGAGGAGGGGAATCGCGATGGACGACATTTCTGCTATTTGCCTCTTCTTCCACTCCACTTCCCCTCTGGCTGAATCCCAGCAAGTTCACCCATTTAGTATTGCCACCCCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

282

Amino Acids

31.19

Weight (kDa)

5.65

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	38 - 239	6.9e-42	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	352
AccII	CGCG	3 cut(s)	315, 429, 746
AciI	CCGC	2 cut(s)	246, 401
AcoI	YGGCCR	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	579
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	379, 416, 636
AjnI	CCWGG	2 cut(s)	129, 490
AluBI	AGCT	6 cut(s)	113, 211, 283, 348, 364, 663
AluI	AGCT	6 cut(s)	113, 211, 283, 348, 364, 663
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	98, 479
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	4 cut(s)	194, 472, 686, 710
Asp700I	GAANNNNTTC	1 cut(s)	232
AspLEI	GCGC	3 cut(s)	317, 715, 729
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	453, 678
AsuHPI	GGTGA	2 cut(s)	143, 809
AvaII	GGWCC	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	181, 484, 673, 697
BccI	CCATC	3 cut(s)	335, 608, 742
BceAI	ACGGC	1 cut(s)	632
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	2 cut(s)	131, 492
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	2 cut(s)	453, 678
BcoDI	GTCTC	2 cut(s)	98, 479
BfaI	CTAG	4 cut(s)	110, 384, 497, 507
BfmI	CTRYAG	1 cut(s)	669
BisI	GCNGC	4 cut(s)	195, 473, 687, 711
BlsI	GCNGC	4 cut(s)	196, 474, 688, 712
Bme1390I	CCNGG	4 cut(s)	131, 453, 492, 678
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	4 cut(s)	131, 453, 492, 678
BmsI	GCATC	1 cut(s)	229
BoxI	GACNNNNGTC	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	453, 678
Bsa29I	ATCGAT	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	35, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	355
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	2 cut(s)	427, 507
BseBI	CCWGG	2 cut(s)	131, 492
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	35, 677
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	2 cut(s)	427, 507
BseMII	CTCAG	2 cut(s)	251, 407
BseRI	GAGGAG	1 cut(s)	748
BseXI	GCAGC	4 cut(s)	181, 484, 673, 697
BseYI	CCCAGC	1 cut(s)	807
BsgI	GTGCAG	1 cut(s)	671
Bsh1236I	CGCG	3 cut(s)	315, 429, 746
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	4 cut(s)	356, 452, 476, 677
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	98, 479
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	202, 589
Bsp19I	CCATGG	1 cut(s)	35
Bsp68I	TCGCGA	1 cut(s)	746
BspACI	CCGC	2 cut(s)	246, 401
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	2 cut(s)	252, 406
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	3 cut(s)	315, 429, 746
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	673
BspT107I	GGYRCC	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	427, 507
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	35, 677
BssMI	GATC	2 cut(s)	202, 589
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	131, 492
Bst4CI	ACNGT	2 cut(s)	370, 527
Bst6I	CTCTTC	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	281, 717
BstDEI	CTNAG	2 cut(s)	260, 393
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	3 cut(s)	315, 429, 746
BstHHI	GCGC	3 cut(s)	317, 715, 729
BstKTI	GATC	2 cut(s)	205, 592
BstMAI	GTCTC	2 cut(s)	98, 479
BstMBI	GATC	2 cut(s)	202, 589
BstMWI	GCNNNNNNNGC	8 cut(s)	217, 312, 323, 361, 388, 426, 457, 716
BstNI	CCWGG	2 cut(s)	131, 492
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	4 cut(s)	129, 451, 490, 676
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	3 cut(s)	315, 429, 746
BstV1I	GCAGC	4 cut(s)	181, 484, 673, 697
Bsu15I	ATCGAT	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	326
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	761
BtsCI	GGATG	1 cut(s)	631
BtuMI	TCGCGA	1 cut(s)	746
Cac8I	GCNNGC	2 cut(s)	281, 717
CfoI	GCGC	3 cut(s)	317, 715, 729
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	2 cut(s)	435, 683
CspCI	CAANNNNNGTGG	2 cut(s)	449, 484
CviAII	CATG	3 cut(s)	29, 36, 720
DdeI	CTNAG	2 cut(s)	260, 393
DpnI	GATC	2 cut(s)	204, 591
DpnII	GATC	2 cut(s)	202, 589
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
EciI	GGCGGA	1 cut(s)	416
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	579
Eco81I	CCTNAGG	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	129, 490
EcoT14I	CCWWGG	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	3 cut(s)	32, 39, 723
FaiI	YATR	8 cut(s)	30, 37, 164, 166, 180, 293, 578, 721
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	3 cut(s)	28, 35, 719
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	195, 473, 687, 711
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	195, 473, 687, 711
FspBI	CTAG	4 cut(s)	110, 384, 497, 507
FspI	TGCGCA	1 cut(s)	714
GlaI	GCGC	3 cut(s)	316, 714, 728
GluI	GCNGC	4 cut(s)	195, 473, 687, 711
GsaI	CCCAGC	1 cut(s)	811
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	4 cut(s)	356, 452, 476, 677
HgaI	GACGC	2 cut(s)	435, 683
HhaI	GCGC	3 cut(s)	317, 715, 729
Hin1II	CATG	3 cut(s)	32, 39, 723
Hin6I	GCGC	3 cut(s)	315, 713, 727
HinP1I	GCGC	3 cut(s)	315, 713, 727
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	7 cut(s)	134, 173, 228, 233, 308, 741, 803
HpaII	CCGG	4 cut(s)	356, 452, 476, 677
HphI	GGTGA	2 cut(s)	143, 809
Hpy166II	GTNNAC	1 cut(s)	817
Hpy188I	TCNGA	3 cut(s)	139, 272, 546
Hpy188III	TCNNGA	5 cut(s)	206, 395, 507, 641, 745
Hpy8I	GTNNAC	1 cut(s)	817
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	163, 526, 676
HpyCH4III	ACNGT	2 cut(s)	370, 527
HpyCH4V	TGCA	3 cut(s)	460, 652, 671
HpyF10VI	GCNNNNNNNGC	8 cut(s)	217, 312, 323, 361, 388, 426, 457, 716
HpyF3I	CTNAG	2 cut(s)	260, 393
Hsp92II	CATG	3 cut(s)	32, 39, 723
HspAI	GCGC	3 cut(s)	315, 713, 727
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	202, 589
Lsp1109I	GCAGC	4 cut(s)	181, 484, 673, 697
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	4 cut(s)	110, 384, 497, 507
MaeIII	GTNAC	2 cut(s)	149, 564
MalI	GATC	2 cut(s)	204, 591
MboI	GATC	2 cut(s)	202, 589
MboII	GAAGA	2 cut(s)	766, 769
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	1 cut(s)	411
MluI	ACGCGT	1 cut(s)	427
MluNI	TGGCCA	1 cut(s)	326
MnlI	CCTC	7 cut(s)	91, 391, 402, 726, 729, 782, 804
Mox20I	TGGCCA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	4 cut(s)	356, 452, 476, 677
MspR9I	CCNGG	4 cut(s)	131, 453, 492, 678
MvaI	CCWGG	2 cut(s)	131, 492
MvnI	CGCG	3 cut(s)	315, 429, 746
MwoI	GCNNNNNNNGC	8 cut(s)	217, 312, 323, 361, 388, 426, 457, 716
NciI	CCSGG	2 cut(s)	453, 678
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	202, 589
NlaIII	CATG	3 cut(s)	32, 39, 723
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	2 cut(s)	149, 564
NruI	TCGCGA	1 cut(s)	746
NsbI	TGCGCA	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	7 cut(s)	134, 173, 228, 233, 308, 741, 803
PkrI	GCNGC	4 cut(s)	196, 474, 688, 712
PshAI	GACNNNNGTC	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	129, 490
PspFI	CCCAGC	1 cut(s)	807
PspGI	CCWGG	2 cut(s)	129, 490
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	673
RruI	TCGCGA	1 cut(s)	746
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	4 cut(s)	195, 473, 687, 711
Sau3AI	GATC	2 cut(s)	202, 589
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	4 cut(s)	131, 453, 492, 678
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	8 cut(s)	115, 132, 149, 213, 285, 350, 366, 665
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	32
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	2 cut(s)	246, 401
SspMI	CTAG	4 cut(s)	110, 384, 497, 507
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	4 cut(s)	129, 451, 490, 676
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	370, 527
TaqI	TCGA	4 cut(s)	21, 231, 372, 665
TasI	AATT	1 cut(s)	411
TfiI	GAWTC	7 cut(s)	134, 173, 228, 233, 308, 741, 803
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	149, 564
TseI	GCWGC	4 cut(s)	194, 472, 686, 710
Tsp45I	GTSAC	2 cut(s)	149, 564
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	495
VpaK11BI	GGWCC	1 cut(s)	32
XbaI	TCTAGA	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	793
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	4 cut(s)	110, 384, 497, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.