Rorug04G0189900

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
32927159 .. 32927939
781 bp
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UTR
Exon/CDS
Intron
Rorug04G0189900.1

Sequence Viewer

Length: 261 bp
ATGGCGAGGAATTGGGGGCCTTATGACTCGGGGAAGAAGCAGGTGGCAAAGGCGATGATGGCGGAGATGGGAAAGAAGAAGAGTAATTCTAAAACGTGGATAATTGTTGGGTCTGTACTCGGTGGACTACCACTATTGGCCTTCATGCTACTCTGGGTACATAAATACAAGGAAAGGAAGCATTTGGAAGAGATGGAGAAAGCTGCAGATTTAGAAGAAGCTCTGCATATGACAACAGTTGGGGATACAAAAGCACATTGA

Protein Analysis

86

Amino Acids

9.7

Weight (kDa)

9.44

Isoelectric Point (pI)

23.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 1 cut(s) 62
AfaI GTAC 2 cut(s) 117, 159
AluBI AGCT 2 cut(s) 203, 221
AluI AGCT 2 cut(s) 203, 221
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 2 cut(s) 17, 138
ApeKI GCWGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 28
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 52, 61, 187
BciVI GTATCC 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 31
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 2 cut(s) 19, 140
BsiHKCI CYCGRG 1 cut(s) 28
BsnI GGCC 2 cut(s) 19, 140
BsoBI CYCGRG 1 cut(s) 28
BspACI CCGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 19, 140
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 2 cut(s) 74, 183
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 190
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 19, 140
BtgZI GCGATG 1 cut(s) 68
BveI ACCTGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 116, 158
CviAII CATG 1 cut(s) 145
CviJI RGCY 4 cut(s) 19, 140, 203, 221
CviKI_1 RGCY 4 cut(s) 19, 140, 203, 221
CviQI GTAC 2 cut(s) 116, 158
Eam1104I CTCTTC 2 cut(s) 74, 183
EarI CTCTTC 2 cut(s) 74, 183
EciI GGCGGA 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 17
FaeI CATG 1 cut(s) 148
FaiI YATR 5 cut(s) 24, 146, 162, 228, 230
FatI CATG 1 cut(s) 144
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 2 cut(s) 19, 140
Hin1II CATG 1 cut(s) 148
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 206, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 1 cut(s) 148
LpnPI CCDG 2 cut(s) 26, 139
Lsp1109I GCAGC 1 cut(s) 190
MaeII ACGT 1 cut(s) 95
MboII GAAGA 5 cut(s) 46, 88, 91, 200, 227
MluCI AATT 3 cut(s) 10, 85, 102
MlyI GAGTC 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeI CATATG 1 cut(s) 228
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 18
PaqCI CACCTGC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 208
RsaI GTAC 2 cut(s) 117, 159
RsaNI GTAC 2 cut(s) 116, 158
SatI GCNGC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 20
SetI ASST 4 cut(s) 45, 98, 205, 223
SfcI CTRYAG 1 cut(s) 204
SgeI CNNG 9 cut(s) 18, 40, 42, 53, 108, 131, 157, 166, 181
Sse9I AATT 3 cut(s) 10, 85, 102
SsiI CCGC 1 cut(s) 62
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 98
TasI AATT 3 cut(s) 10, 85, 102
TatI WGTACW 1 cut(s) 115
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.