Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Forward (+)

4201427 .. 4205258

Gene Structure 3832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06970.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGGCACTTATCGTCCATGTTCAGTGGACTTGCGAGATCGCTATCATTGAAGAAGGGGAAGAATAGTTCAGGATGTAAATGTAATGTAAGAGAAGCTGCAGAGGCAATGGCAAAGGAGGCGAAGAGAAATGACTTGATACTCCGAACTTCTGGAACTGTCAATGTTGATGGCTCAAATAATTTGGCTTCAGTTTTTAGCAAAAGAGGCCAGAAAGGAGTCAACCAGGACTGCTGCATTGTGTGGGAGGAATTTGGGTGCCAACAAGACATGATGTTTTGTGGGATCTTTGATGGGCATGGACAATGGGGACATTTTGTGGCGAAAAGGATCAGAGAAACAATGCCGCCCTCTTTGTTGTGTAATTGGCAAGAGACTCTTCTAGCTCAAACTTCACTAGATCCGGACTTGAAGGAGTTGGAGTTGGAATCTGATAAAAAGTATGATCAGAGGTTTAACATATGGAAGCACTCCTATATAAAGACTTGTGCTGCTGTTGATCAAGAGCTTGAGCAAGATCGTAAAATCAATTCCTTTTACAGCGGTTCCACTGGTCTCACCATTGTCAGACAGGGTGATCTTATTGTTATATCAAATGTTGGCGATTCTCGAGCTGTTTTGGGTACAACTTTAGAAGATGGAAGCTTGGTGGCAGTTCAGCTCACTGTTGATTTCAAGCCCAATTTACCTGAGGAGGCTGAGAGAATAACTCAAAGAAATGGGAGAGTGTTCAGTTTAGATGATGAAACAGGAGTTTACAGGTTGTGGCTACCTTATGAAGAGTCACCGGGACTAGCAATGTCTAGGGCTTATGGAGACTACTGCGTCAAAGATTTTGGACTTATTTCCGAGCCTGAAGTCACTCACAGAAACATAACAAGCAGAGATCAATTTGTTGTGCTAGCAACCGATGGGGTATGGGATGTGATATCAAACGAAGAAGCAGTGGAAATTGTGGGTTCAACAGCAGAGAGGGAGAAGTGTGCCAAGCGACTCGTCGAATATGCAGCTGCAGCATGGAAGAAGAAGAGGAGGGGTTATGCAATGGATGACATTTCCGCCATTTGCCTCTTCTTTCACTCTTCTTCCTCTTTGTCACAGCAAGTTCACCCCATTAGTACACCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

377

Amino Acids

41.95

Weight (kDa)

5.76

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	64 - 249	6e-39	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	824
AccB1I	GGYRCC	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	3 cut(s)	347, 543, 1059
AclWI	GGATC	3 cut(s)	293, 338, 395
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	2 cut(s)	174, 876
AfaI	GTAC	2 cut(s)	625, 1120
AgsI	TTSAA	4 cut(s)	52, 412, 676, 963
AjnI	CCWGG	1 cut(s)	225
AloI	GAACNNNNNNTCC	2 cut(s)	52, 84
AluBI	AGCT	7 cut(s)	98, 386, 508, 614, 645, 661, 1010
AluI	AGCT	7 cut(s)	98, 386, 508, 614, 645, 661, 1010
Alw26I	GTCTC	3 cut(s)	368, 560, 810
AlwI	GGATC	3 cut(s)	293, 338, 395
Ama87I	CYCGRG	1 cut(s)	609
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	6 cut(s)	98, 234, 491, 1007, 1010, 1013
ApoI	RAATTY	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	789
AsuHPI	GGTGA	4 cut(s)	550, 587, 777, 1100
AsuNHI	GCTAGC	1 cut(s)	901
AvaI	CYCGRG	1 cut(s)	609
AxyI	CCTNAGG	1 cut(s)	690
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	258
BbvI	GCAGC	6 cut(s)	85, 221, 478, 997, 1019, 1025
BccI	CCATC	4 cut(s)	164, 287, 632, 905
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	2 cut(s)	445, 499
BcnI	CCSGG	1 cut(s)	789
BcoDI	GTCTC	3 cut(s)	368, 560, 810
BfaI	CTAG	5 cut(s)	383, 398, 794, 804, 902
BfmI	CTRYAG	2 cut(s)	99, 1011
BisI	GCNGC	7 cut(s)	99, 235, 347, 492, 1008, 1011, 1014
BlsI	GCNGC	7 cut(s)	100, 236, 348, 493, 1009, 1012, 1015
Bme1390I	CCNGG	2 cut(s)	227, 789
BmeT110I	CYCGRG	1 cut(s)	609
BmiI	GGNNCC	2 cut(s)	260, 547
BmrFI	CCNGG	2 cut(s)	227, 789
BmtI	GCTAGC	1 cut(s)	905
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	789
BsaBI	GATNNNNATC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	560
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bse1I	ACTGG	1 cut(s)	556
Bse21I	CCTNAGG	1 cut(s)	690
Bse3DI	GCAATG	3 cut(s)	114, 804, 1050
Bse8I	GATNNNNATC	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	227
BseGI	GGATG	3 cut(s)	80, 928, 1054
BseJI	GATNNNNATC	1 cut(s)	43
BseMI	GCAATG	3 cut(s)	114, 804, 1050
BseMII	CTCAG	2 cut(s)	681, 690
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	2 cut(s)	707, 1045
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	6 cut(s)	85, 221, 478, 997, 1019, 1025
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	2 cut(s)	404, 788
BslFI	GGGAC	2 cut(s)	324, 804
BsmAI	GTCTC	3 cut(s)	368, 560, 810
BsmFI	GGGAC	2 cut(s)	324, 804
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	560
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	9 cut(s)	38, 285, 330, 400, 445, 499, 517, 577, 886
BspACI	CCGC	3 cut(s)	347, 543, 1059
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	682, 691
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	260, 547
BspMAI	CTGCAG	2 cut(s)	103, 1015
BspOI	GCTAGC	1 cut(s)	905
BspPI	GGATC	3 cut(s)	293, 338, 395
BspT107I	GGYRCC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	560
BsrDI	GCAATG	3 cut(s)	114, 804, 1050
BsrI	ACTGG	1 cut(s)	556
BssMI	GATC	9 cut(s)	38, 285, 330, 400, 445, 499, 517, 577, 886
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	160, 667
Bst6I	CTCTTC	6 cut(s)	119, 384, 774, 1022, 1076, 1087
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	2 cut(s)	690, 699
BstF5I	GGATG	3 cut(s)	80, 928, 1054
BstKTI	GATC	9 cut(s)	41, 288, 333, 403, 448, 502, 520, 580, 889
BstMAI	GTCTC	3 cut(s)	368, 560, 810
BstMBI	GATC	9 cut(s)	38, 285, 330, 400, 445, 499, 517, 577, 886
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 119, 207, 1013
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	225, 787
BstSFI	CTRYAG	2 cut(s)	99, 1011
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	6 cut(s)	85, 221, 478, 997, 1019, 1025
BstX2I	RGATCY	2 cut(s)	285, 400
BstYI	RGATCY	2 cut(s)	285, 400
Bsu36I	CCTNAGG	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	80, 928, 1054
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	4 cut(s)	31, 549, 663, 951
Cac8I	GCNNGC	1 cut(s)	903
CseI	GACGC	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	624, 1119
CviAII	CATG	4 cut(s)	19, 271, 299, 1017
CviQI	GTAC	2 cut(s)	624, 1119
DdeI	CTNAG	2 cut(s)	690, 699
DpnI	GATC	9 cut(s)	40, 287, 332, 402, 447, 501, 519, 579, 888
DpnII	GATC	9 cut(s)	38, 285, 330, 400, 445, 499, 517, 577, 886
DrdI	GACNNNNNNGTC	1 cut(s)	824
DseDI	GACNNNNNNGTC	1 cut(s)	824
Eam1104I	CTCTTC	6 cut(s)	119, 384, 774, 1022, 1076, 1087
EarI	CTCTTC	6 cut(s)	119, 384, 774, 1022, 1076, 1087
EciI	GGCGGA	1 cut(s)	1048
Eco31I	GGTCTC	1 cut(s)	560
Eco32I	GATATC	1 cut(s)	930
Eco57I	CTGAAG	2 cut(s)	174, 876
Eco81I	CCTNAGG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	930
FaeI	CATG	4 cut(s)	22, 274, 302, 1020
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	2 cut(s)	324, 804
FatI	CATG	4 cut(s)	18, 270, 298, 1016
FauNDI	CATATG	1 cut(s)	461
FbaI	TGATCA	2 cut(s)	445, 499
Fnu4HI	GCNGC	7 cut(s)	99, 235, 347, 492, 1008, 1011, 1014
FokI	GGATG	3 cut(s)	87, 935, 1061
Fsp4HI	GCNGC	7 cut(s)	99, 235, 347, 492, 1008, 1011, 1014
FspBI	CTAG	5 cut(s)	383, 398, 794, 804, 902
GluI	GCNGC	7 cut(s)	99, 235, 347, 492, 1008, 1011, 1014
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	404, 788
HgaI	GACGC	1 cut(s)	814
Hin1II	CATG	4 cut(s)	22, 274, 302, 1020
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	6 cut(s)	219, 376, 428, 605, 782, 993
HpaII	CCGG	2 cut(s)	404, 788
HphI	GGTGA	4 cut(s)	550, 587, 777, 1100
Hpy166II	GTNNAC	5 cut(s)	29, 223, 757, 1108, 1121
Hpy188I	TCNGA	6 cut(s)	146, 335, 433, 450, 569, 850
Hpy188III	TCNNGA	5 cut(s)	72, 153, 404, 503, 609
Hpy8I	GTNNAC	5 cut(s)	29, 223, 757, 1108, 1121
Hpy99I	CGWCG	1 cut(s)	1001
HpyAV	CCTTC	2 cut(s)	49, 406
HpyCH4III	ACNGT	2 cut(s)	160, 667
HpyCH4V	TGCA	5 cut(s)	101, 237, 1007, 1013, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 119, 207, 1013
HpyF3I	CTNAG	2 cut(s)	690, 699
Hsp92II	CATG	4 cut(s)	22, 274, 302, 1020
Kpn2I	TCCGGA	1 cut(s)	403
Ksp22I	TGATCA	2 cut(s)	445, 499
Kzo9I	GATC	9 cut(s)	38, 285, 330, 400, 445, 499, 517, 577, 886
Lsp1109I	GCAGC	6 cut(s)	85, 221, 478, 997, 1019, 1025
MaeI	CTAG	5 cut(s)	383, 398, 794, 804, 902
MaeIII	GTNAC	3 cut(s)	783, 859, 1095
MalI	GATC	9 cut(s)	40, 287, 332, 402, 447, 501, 519, 579, 888
MboI	GATC	9 cut(s)	38, 285, 330, 400, 445, 499, 517, 577, 886
MflI	RGATCY	2 cut(s)	285, 400
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	7 cut(s)	181, 251, 364, 529, 682, 890, 951
MlyI	GAGTC	4 cut(s)	228, 370, 791, 987
MmeI	TCCRAC	2 cut(s)	399, 405
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	1 cut(s)	456
MspA1I	CMGCKG	2 cut(s)	543, 1010
MspI	CCGG	2 cut(s)	404, 788
MspR9I	CCNGG	2 cut(s)	227, 789
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	4 cut(s)	104, 119, 207, 1013
NciI	CCSGG	1 cut(s)	789
NdeI	CATATG	1 cut(s)	461
NdeII	GATC	9 cut(s)	38, 285, 330, 400, 445, 499, 517, 577, 886
NheI	GCTAGC	1 cut(s)	901
NlaIII	CATG	4 cut(s)	22, 274, 302, 1020
NlaIV	GGNNCC	2 cut(s)	260, 547
NmuCI	GTSAC	3 cut(s)	783, 859, 1095
PaeR7I	CTCGAG	1 cut(s)	609
PfeI	GAWTC	2 cut(s)	428, 605
PkrI	GCNGC	7 cut(s)	100, 236, 348, 493, 1009, 1012, 1015
PleI	GAGTC	4 cut(s)	227, 370, 790, 987
PpsI	GAGTC	4 cut(s)	227, 370, 790, 987
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	260, 547
PstI	CTGCAG	2 cut(s)	103, 1015
PsuI	RGATCY	2 cut(s)	285, 400
PvuII	CAGCTG	1 cut(s)	1010
RsaI	GTAC	2 cut(s)	625, 1120
RsaNI	GTAC	2 cut(s)	624, 1119
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	7 cut(s)	99, 235, 347, 492, 1008, 1011, 1014
Sau3AI	GATC	9 cut(s)	38, 285, 330, 400, 445, 499, 517, 577, 886
SchI	GAGTC	4 cut(s)	228, 370, 791, 987
ScrFI	CCNGG	2 cut(s)	227, 789
SduI	GDGCHC	1 cut(s)	9
SfcI	CTRYAG	2 cut(s)	99, 1011
Sfr274I	CTCGAG	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	509, 609
SmoI	CTYRAG	2 cut(s)	509, 609
Sse9I	AATT	7 cut(s)	181, 251, 364, 529, 682, 890, 951
SsiI	CCGC	3 cut(s)	347, 543, 1059
SspMI	CTAG	5 cut(s)	383, 398, 794, 804, 902
StyD4I	CCNGG	2 cut(s)	225, 787
TaaI	ACNGT	2 cut(s)	160, 667
TaqI	TCGA	2 cut(s)	610, 999
TasI	AATT	7 cut(s)	181, 251, 364, 529, 682, 890, 951
TatI	WGTACW	1 cut(s)	1118
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	428, 605
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	4 cut(s)	31, 556, 670, 951
TseFI	GTSAC	3 cut(s)	783, 859, 1095
TseI	GCWGC	6 cut(s)	98, 234, 491, 1007, 1010, 1013
Tsp45I	GTSAC	3 cut(s)	783, 859, 1095
TspDTI	ATGAA	2 cut(s)	759, 792
TspRI	CASTG	4 cut(s)	31, 556, 670, 951
XapI	RAATTY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	609
XspI	CTAG	5 cut(s)	383, 398, 794, 804, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.