Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

28527023 .. 28530855

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1197100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGGTACTTATCCTCCATGTTCAGCGGATTGGCGCGATCCCTATTGTTCAAGAAAGGGAAGAACAATGGTGGGGATTCAGGTGCAAGGGGAGCTGCAGAAGCGATGGCAAAGGTGGCGAAGAAGAATGACATGATCCTACGCTCTTCGGGGATTGTCAATGTCGATGGTTCAAATAATTTTGCTTCTGTTTTCTCGAAGAGAGGAGAGAAAGGAGTCAACCAGGATTGCTGCATTGTATGGGAGGAATTTGGGTGCCAAGAAGACATGATGTTTTGTGGGATTTTTGACGGGCATGGTCCATGGGGACATTTCGTGGCGAAACAGATAAGAGAAACAATGCCACCCTCTTTGTTGTGCAGTTGGCAAGAGACACTAGGTCAAACTTCTATTGACCTGGATTCGGACTTGGAGTCGGATAAAAAGCGTCACCGGTTTAACATATGGAAGGATTCCTATATCAGAACTTGTGCTGCCATTGATCACGAGCTTGAACAGCATCGTAGGATCGATTCCTTTTACAGTGGAACAACTGCCCTGAGTATTGTCAGACAGGGTGAGCTTATTTTCATAGCCAATGTTGGCGACTCTCGTGCTGTTTTGGCTACAACTTTAGACGATGGAAGCTTGACGCCGGTTCAGCTTACTGTCGATTTCAAGCCTAGTTTACCTCAGGAGGAGGAGCGAATAATTCAAAGCAATGGGCGGGTTTTTTGTTTAGAAGATGAGCCGGGAGTGCAAAGGGTATGGCAGCCGGACGGGGAAACACCCGGACTAGCCATGTCCAGAGCCTTTGGAGATTACTGTTTGAAGGACTTTGGTCTCATTTCTGTGCCTGAAGTGTCACATAGAAATATAACAAGCAAAGATCAGTTTGTTGTGTTGGCAACTGATGGGGTTTGGGATGTCATTTCGAATCAAGAAGCCGTGCAGATTGTAGGTTCGACGGCAGACAGGGCGAAGGCTGCAAAGCTTCTGGTGGAGTGCGCTGCGCAAGCATGGAAGCGGAAGAGGAGGGGAATAGCGATGGACGACATTTCTGCCATTTGCCTCTTCTTTCACTCTAATTCCCCTCTCTCTGAATCCCAGCAAGTGCACCCTATTAGTGTTGCCACCCCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

375

Amino Acids

41.22

Weight (kDa)

5.69

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	86 - 330	2.3e-40	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	993
AccB1I	GGYRCC	1 cut(s)	255
AccII	CGCG	1 cut(s)	37
AciI	CCGC	3 cut(s)	27, 706, 1006
AclWI	GGATC	3 cut(s)	33, 130, 515
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	858
AcyI	GRCGYC	1 cut(s)	632
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	432
AgsI	TTSAA	6 cut(s)	52, 174, 494, 658, 695, 811
AhdI	GACNNNNNGTC	2 cut(s)	378, 412
AjnI	CCWGG	2 cut(s)	222, 396
AluBI	AGCT	6 cut(s)	95, 490, 562, 627, 643, 973
AluI	AGCT	6 cut(s)	95, 490, 562, 627, 643, 973
Alw21I	GWGCWC	1 cut(s)	1098
Alw26I	GTCTC	2 cut(s)	365, 827
Alw44I	GTGCAC	1 cut(s)	1094
AlwI	GGATC	3 cut(s)	33, 130, 515
ApaLI	GTGCAC	1 cut(s)	1094
ApeKI	GCWGC	6 cut(s)	95, 231, 473, 751, 965, 989
ApoI	RAATTY	1 cut(s)	248
AsiGI	ACCGGT	1 cut(s)	432
AspLEI	GCGC	3 cut(s)	37, 989, 994
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	2 cut(s)	732, 771
AsuHPI	GGTGA	2 cut(s)	422, 569
AsuII	TTCGAA	1 cut(s)	914
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	672
BaeGI	GKGCMC	1 cut(s)	1098
BanI	GGYRCC	1 cut(s)	255
BauI	CACGAG	2 cut(s)	485, 591
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	1098
BbvI	GCAGC	6 cut(s)	82, 218, 460, 763, 952, 976
BccI	CCATC	5 cut(s)	100, 161, 614, 887, 1021
BceAI	ACGGC	2 cut(s)	911, 963
BcgI	CGANNNNNNTGC	4 cut(s)	575, 609, 1022, 1056
BciT130I	CCWGG	2 cut(s)	224, 398
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	2 cut(s)	732, 771
BcoDI	GTCTC	2 cut(s)	365, 827
BfaI	CTAG	3 cut(s)	377, 663, 776
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	6 cut(s)	96, 232, 474, 752, 966, 990
BlsI	GCNGC	6 cut(s)	97, 233, 475, 753, 967, 991
Bme1390I	CCNGG	4 cut(s)	224, 398, 732, 771
Bme18I	GGWCC	1 cut(s)	299
BmeRI	GACNNNNNGTC	2 cut(s)	378, 412
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	4 cut(s)	224, 398, 732, 771
BmsI	GCATC	1 cut(s)	508
BoxI	GACNNNNGTC	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	914
BpuMI	CCSGG	2 cut(s)	732, 771
Bsa29I	ATCGAT	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	632
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	2 cut(s)	432, 634
Bse21I	CCTNAGG	1 cut(s)	672
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	2 cut(s)	224, 398
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	910
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	2 cut(s)	530, 686
BseRI	GAGGAG	4 cut(s)	219, 692, 695, 1027
BseSI	GKGCMC	1 cut(s)	1098
BseXI	GCAGC	6 cut(s)	82, 218, 460, 763, 952, 976
BseYI	CCCAGC	1 cut(s)	1086
BsgI	GTGCAG	2 cut(s)	379, 950
Bsh1236I	CGCG	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	432
BshVI	ATCGAT	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	1098
BsiSI	CCGG	5 cut(s)	433, 635, 731, 755, 771
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	365, 827
BsmFI	GGGAC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	827
Bsp119I	TTCGAA	1 cut(s)	914
Bsp1286I	GDGCHC	1 cut(s)	1098
Bsp143I	GATC	5 cut(s)	38, 135, 481, 507, 868
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	3 cut(s)	27, 706, 1006
BspCNI	CTCAG	2 cut(s)	531, 685
BspDI	ATCGAT	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	3 cut(s)	33, 130, 515
BspQI	GCTCTTC	1 cut(s)	151
BspT104I	TTCGAA	1 cut(s)	914
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	2 cut(s)	432, 634
BssAI	RCCGGY	2 cut(s)	432, 634
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	5 cut(s)	38, 135, 481, 507, 868
BssNI	GRCGYC	1 cut(s)	632
BssSI	CACGAG	2 cut(s)	485, 591
BssT1I	CCWWGG	1 cut(s)	302
Bst2BI	CACGAG	2 cut(s)	485, 591
Bst2UI	CCWGG	2 cut(s)	224, 398
Bst4CI	ACNGT	3 cut(s)	524, 649, 806
Bst6I	CTCTTC	4 cut(s)	151, 194, 1004, 1058
BstACI	GRCGYC	1 cut(s)	632
BstBI	TTCGAA	1 cut(s)	914
BstC8I	GCNNGC	1 cut(s)	996
BstDEI	CTNAG	2 cut(s)	539, 672
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	910
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	3 cut(s)	37, 989, 994
BstKTI	GATC	5 cut(s)	41, 138, 484, 510, 871
BstMAI	GTCTC	2 cut(s)	365, 827
BstMBI	GATC	5 cut(s)	38, 135, 481, 507, 868
BstNI	CCWGG	2 cut(s)	224, 398
BstPAI	GACNNNNGTC	1 cut(s)	819
BstSCI	CCNGG	4 cut(s)	222, 396, 730, 769
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	1098
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	6 cut(s)	82, 218, 460, 763, 952, 976
BstV2I	GAAGAC	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	672
BsuTUI	ATCGAT	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	2 cut(s)	119, 1040
BtsCI	GGATG	1 cut(s)	910
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	996
CfoI	GCGC	3 cut(s)	37, 989, 994
Cfr10I	RCCGGY	2 cut(s)	432, 634
Cfr13I	GGNCC	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	510
CseI	GACGC	2 cut(s)	416, 640
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	7 cut(s)	19, 133, 268, 296, 303, 781, 999
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	539, 672
DpnI	GATC	5 cut(s)	40, 137, 483, 509, 870
DpnII	GATC	5 cut(s)	38, 135, 481, 507, 868
DriI	GACNNNNNGTC	2 cut(s)	378, 412
Eam1104I	CTCTTC	4 cut(s)	151, 194, 1004, 1058
Eam1105I	GACNNNNNGTC	2 cut(s)	378, 412
EarI	CTCTTC	4 cut(s)	151, 194, 1004, 1058
Eco130I	CCWWGG	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	827
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	858
Eco81I	CCTNAGG	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	222, 396
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	7 cut(s)	22, 136, 271, 299, 306, 784, 1002
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	7 cut(s)	18, 132, 267, 295, 302, 780, 998
FauI	CCCGC	1 cut(s)	699
FauNDI	CATATG	1 cut(s)	443
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	6 cut(s)	96, 232, 474, 752, 966, 990
FokI	GGATG	1 cut(s)	917
Fsp4HI	GCNGC	6 cut(s)	96, 232, 474, 752, 966, 990
FspBI	CTAG	3 cut(s)	377, 663, 776
FspI	TGCGCA	1 cut(s)	993
GlaI	GCGC	3 cut(s)	36, 988, 993
GluI	GCNGC	6 cut(s)	96, 232, 474, 752, 966, 990
GsaI	CCCAGC	1 cut(s)	1090
HapII	CCGG	5 cut(s)	433, 635, 731, 755, 771
HgaI	GACGC	2 cut(s)	416, 640
HhaI	GCGC	3 cut(s)	37, 989, 994
Hin1I	GRCGYC	1 cut(s)	632
Hin1II	CATG	7 cut(s)	22, 136, 271, 299, 306, 784, 1002
Hin6I	GCGC	3 cut(s)	35, 987, 992
HinP1I	GCGC	3 cut(s)	35, 987, 992
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	2 cut(s)	625, 971
HinfI	GANTC	9 cut(s)	77, 216, 401, 413, 452, 512, 587, 916, 1082
HpaII	CCGG	5 cut(s)	433, 635, 731, 755, 771
HphI	GGTGA	2 cut(s)	422, 569
Hpy166II	GTNNAC	3 cut(s)	220, 668, 1096
Hpy188I	TCNGA	5 cut(s)	406, 418, 464, 551, 1081
Hpy188III	TCNNGA	6 cut(s)	52, 196, 485, 674, 786, 920
Hpy8I	GTNNAC	3 cut(s)	220, 668, 1096
Hpy99I	CGWCG	1 cut(s)	949
HpyAV	CCTTC	3 cut(s)	442, 805, 955
HpyCH4III	ACNGT	3 cut(s)	524, 649, 806
HpyCH4V	TGCA	8 cut(s)	86, 98, 234, 360, 739, 931, 968, 1096
HpyF3I	CTNAG	2 cut(s)	539, 672
Hsp92I	GRCGYC	1 cut(s)	632
Hsp92II	CATG	7 cut(s)	22, 136, 271, 299, 306, 784, 1002
HspAI	GCGC	3 cut(s)	35, 987, 992
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	38, 135, 481, 507, 868
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	92, 682
Lsp1109I	GCAGC	6 cut(s)	82, 218, 460, 763, 952, 976
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	3 cut(s)	377, 663, 776
MaeIII	GTNAC	2 cut(s)	428, 843
MalI	GATC	5 cut(s)	40, 137, 483, 509, 870
MboI	GATC	5 cut(s)	38, 135, 481, 507, 868
MboII	GAAGA	9 cut(s)	73, 133, 136, 138, 211, 275, 734, 1021, 1045
MhlI	GDGCHC	1 cut(s)	1098
MluCI	AATT	4 cut(s)	178, 248, 690, 1066
MlyI	GAGTC	3 cut(s)	225, 422, 581
MmeI	TCCRAC	1 cut(s)	396
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	830
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	5 cut(s)	433, 635, 731, 755, 771
MspR9I	CCNGG	4 cut(s)	224, 398, 732, 771
MteI	GCGCNGCGC	1 cut(s)	990
MvaI	CCWGG	2 cut(s)	224, 398
MvnI	CGCG	1 cut(s)	37
NciI	CCSGG	2 cut(s)	732, 771
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	443
NdeII	GATC	5 cut(s)	38, 135, 481, 507, 868
NlaIII	CATG	7 cut(s)	22, 136, 271, 299, 306, 784, 1002
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	2 cut(s)	428, 843
NsbI	TGCGCA	1 cut(s)	993
NspV	TTCGAA	1 cut(s)	914
PciSI	GCTCTTC	1 cut(s)	151
PfeI	GAWTC	6 cut(s)	77, 401, 452, 512, 916, 1082
PinAI	ACCGGT	1 cut(s)	432
PkrI	GCNGC	6 cut(s)	97, 233, 475, 753, 967, 991
PleI	GAGTC	3 cut(s)	224, 421, 581
PpsI	GAGTC	3 cut(s)	224, 421, 581
PshAI	GACNNNNGTC	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	222, 396
PspFI	CCCAGC	1 cut(s)	1086
PspGI	CCWGG	2 cut(s)	222, 396
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	830
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	6 cut(s)	96, 232, 474, 752, 966, 990
Sau3AI	GATC	5 cut(s)	38, 135, 481, 507, 868
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	3 cut(s)	225, 422, 581
ScrFI	CCNGG	4 cut(s)	224, 398, 732, 771
SduI	GDGCHC	1 cut(s)	1098
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	914
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	830
Sse9I	AATT	4 cut(s)	178, 248, 690, 1066
SsiI	CCGC	3 cut(s)	27, 706, 1006
SspMI	CTAG	3 cut(s)	377, 663, 776
StyD4I	CCNGG	4 cut(s)	222, 396, 730, 769
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	3 cut(s)	524, 649, 806
TaqI	TCGA	6 cut(s)	165, 197, 510, 651, 914, 944
TasI	AATT	4 cut(s)	178, 248, 690, 1066
TfiI	GAWTC	6 cut(s)	77, 401, 452, 512, 916, 1082
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	428, 843
TseI	GCWGC	6 cut(s)	95, 231, 473, 751, 965, 989
Tsp45I	GTSAC	2 cut(s)	428, 843
TspDTI	ATGAA	1 cut(s)	559
TspRI	CASTG	1 cut(s)	529
VneI	GTGCAC	1 cut(s)	1094
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	248
XspI	CTAG	3 cut(s)	377, 663, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.