Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

43498066 .. 43501272

Gene Structure 3207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATGTTTTGTGGGATCTTTGATGGGCATGGACAATGGGGACATTTTGTGGCGAAAAGGATCAGAGAAACAATGCCGCCCTCGTTGTTGTGTAATTGGCAAGAGACACTAGCTCAAACTTCACTAGATCCAGACTTGAAAGAGTTGGACTTGGAACCGGATAAAAAGTATGATCAGAGGTTTAACATATGGAAGCACTCCTATATAAAAACTTGTGCGGCTGTTGATCAAGAGCTTGAGCAAGATCGCAAAATCAATTCCTTTTACAGCGGTACCACTGGTCTCACCATTGTCAGACAGGGTGATCTTATTGTCATAGCAAATGTTGGTGATTCTCGAGCTGTTTTGGGTACAACTTTAGAAGATGGAAGCTTGGCGGCAGTTCAGCTTACTGTTGATTTCAAGCCCAATTTACCTGAGGAGGCTGAGAGAATAACTCAAAGAAATGGGAGAGTTTTCAGTTTAGATGATGAAACAGGAGTTCATAGGTTGTGGCTACCTTATGAAGAATCACCAGGACTAGCAATGTCTAGGGCATTCGGAGACTACTGCGTCAAGGATTTTGGACTTATTTCCGAGCCTGAAGTTACTCACAGAAACATAACAAGCAGAGATCAATTTGTTGTGCTAGCAACTGATGGGGTATGGGATGTGATTTCGAACGAAGAAGCAGTGGAAATTGTGGGTTCAACAGCAGAGAGGGAAAAGTGTGCCAAGCGACTGGTGGACTGTGCGGCTGCAGCATGGAGGAAGAAGAGGAGGGGTTATGCTATGGATGACATTTCCGCTATCTGCCTCTTCTTTCACTCTTCCTCTTTGTCTCAGCAAGTTCACCCCATTAGTACACTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

284

Amino Acids

31.96

Weight (kDa)

5.24

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	63 - 248	2.7e-41	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	6 cut(s)	77, 218, 270, 377, 734, 786
AclWI	GGATC	3 cut(s)	23, 68, 122
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	3 cut(s)	274, 352, 844
AgsI	TTSAA	3 cut(s)	139, 403, 690
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	5 cut(s)	113, 235, 341, 372, 388
AluI	AGCT	5 cut(s)	113, 235, 341, 372, 388
Alw26I	GTCTC	4 cut(s)	98, 287, 537, 825
AlwI	GGATC	3 cut(s)	23, 68, 122
Ama87I	CYCGRG	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	737, 740
Asp718I	GGTACC	1 cut(s)	272
AsuHPI	GGTGA	5 cut(s)	277, 314, 341, 504, 824
AsuII	TTCGAA	1 cut(s)	659
AsuNHI	GCTAGC	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	336
AxyI	CCTNAGG	1 cut(s)	417
BaeI	ACNNNNGTAYC	2 cut(s)	256, 289
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	724, 752
BccI	CCATC	3 cut(s)	17, 359, 632
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	2 cut(s)	172, 226
BcoDI	GTCTC	4 cut(s)	98, 287, 537, 825
BfaI	CTAG	5 cut(s)	110, 125, 521, 531, 629
BfmI	CTRYAG	1 cut(s)	738
BisI	GCNGC	6 cut(s)	77, 219, 378, 735, 738, 741
BlsI	GCNGC	6 cut(s)	78, 220, 379, 736, 739, 742
Bme1390I	CCNGG	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	156, 274
BmrFI	CCNGG	1 cut(s)	516
BmtI	GCTAGC	1 cut(s)	632
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
Bpu14I	TTCGAA	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	283, 726
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	516
BseGI	GGATG	2 cut(s)	655, 781
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	408, 417, 836
BseNI	ACTGG	2 cut(s)	283, 726
BseRI	GAGGAG	2 cut(s)	434, 772
BseXI	GCAGC	2 cut(s)	724, 752
BshNI	GGYRCC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	54
BsmAI	GTCTC	4 cut(s)	98, 287, 537, 825
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	659
Bsp143I	GATC	8 cut(s)	15, 60, 127, 172, 226, 244, 304, 613
BspACI	CCGC	6 cut(s)	77, 218, 270, 377, 734, 786
BspCNI	CTCAG	3 cut(s)	409, 418, 835
BspLI	GGNNCC	2 cut(s)	156, 274
BspMAI	CTGCAG	1 cut(s)	742
BspOI	GCTAGC	1 cut(s)	632
BspPI	GGATC	3 cut(s)	23, 68, 122
BspT104I	TTCGAA	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	283, 726
BssMI	GATC	8 cut(s)	15, 60, 127, 172, 226, 244, 304, 613
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	394, 731
Bst6I	CTCTTC	3 cut(s)	749, 803, 814
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	3 cut(s)	417, 426, 822
BstF5I	GGATG	2 cut(s)	655, 781
BstKTI	GATC	8 cut(s)	18, 63, 130, 175, 229, 247, 307, 616
BstMAI	GTCTC	4 cut(s)	98, 287, 537, 825
BstMBI	GATC	8 cut(s)	15, 60, 127, 172, 226, 244, 304, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	738
BstV1I	GCAGC	2 cut(s)	724, 752
BstX2I	RGATCY	2 cut(s)	15, 127
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	2 cut(s)	15, 127
Bsu36I	CCTNAGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	655, 781
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	276, 678
Cac8I	GCNNGC	1 cut(s)	630
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	273, 351, 843
CviAII	CATG	2 cut(s)	29, 744
CviQI	GTAC	3 cut(s)	273, 351, 843
DdeI	CTNAG	3 cut(s)	417, 426, 822
DpnI	GATC	8 cut(s)	17, 62, 129, 174, 228, 246, 306, 615
DpnII	GATC	8 cut(s)	15, 60, 127, 172, 226, 244, 304, 613
DrdI	GACNNNNNNGTC	1 cut(s)	551
DseDI	GACNNNNNNGTC	1 cut(s)	551
Eam1104I	CTCTTC	3 cut(s)	749, 803, 814
EarI	CTCTTC	3 cut(s)	749, 803, 814
Eco31I	GGTCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	603
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	514
FaeI	CATG	2 cut(s)	32, 747
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	2 cut(s)	28, 743
FauNDI	CATATG	1 cut(s)	188
FbaI	TGATCA	2 cut(s)	172, 226
Fnu4HI	GCNGC	6 cut(s)	77, 219, 378, 735, 738, 741
FokI	GGATG	2 cut(s)	662, 788
Fsp4HI	GCNGC	6 cut(s)	77, 219, 378, 735, 738, 741
FspBI	CTAG	5 cut(s)	110, 125, 521, 531, 629
GluI	GCNGC	6 cut(s)	77, 219, 378, 735, 738, 741
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	541
Hin1II	CATG	2 cut(s)	32, 747
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	2 cut(s)	332, 509
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	5 cut(s)	277, 314, 341, 504, 824
Hpy166II	GTNNAC	3 cut(s)	727, 832, 845
Hpy188I	TCNGA	5 cut(s)	65, 177, 296, 542, 577
Hpy188III	TCNNGA	3 cut(s)	131, 230, 336
Hpy8I	GTNNAC	3 cut(s)	727, 832, 845
HpyCH4III	ACNGT	2 cut(s)	394, 731
HpyCH4V	TGCA	1 cut(s)	740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	3 cut(s)	417, 426, 822
Hsp92II	CATG	2 cut(s)	32, 747
KpnI	GGTACC	1 cut(s)	276
Ksp22I	TGATCA	2 cut(s)	172, 226
Kzo9I	GATC	8 cut(s)	15, 60, 127, 172, 226, 244, 304, 613
Lsp1109I	GCAGC	2 cut(s)	724, 752
MaeI	CTAG	5 cut(s)	110, 125, 521, 531, 629
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	8 cut(s)	17, 62, 129, 174, 228, 246, 306, 615
MboI	GATC	8 cut(s)	15, 60, 127, 172, 226, 244, 304, 613
MboII	GAAGA	7 cut(s)	374, 518, 677, 763, 766, 790, 801
MflI	RGATCY	2 cut(s)	15, 127
MluCI	AATT	5 cut(s)	94, 256, 409, 617, 678
MmeI	TCCRAC	1 cut(s)	126
MseI	TTAA	2 cut(s)	183, 849
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	740
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	8 cut(s)	15, 60, 127, 172, 226, 244, 304, 613
NheI	GCTAGC	1 cut(s)	628
NlaIII	CATG	2 cut(s)	32, 747
NlaIV	GGNNCC	2 cut(s)	156, 274
NspV	TTCGAA	1 cut(s)	659
PaeR7I	CTCGAG	1 cut(s)	336
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	332, 509
PkrI	GCNGC	6 cut(s)	78, 220, 379, 736, 739, 742
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	156, 274
PstI	CTGCAG	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	15, 127
RsaI	GTAC	3 cut(s)	274, 352, 844
RsaNI	GTAC	3 cut(s)	273, 351, 843
SaqAI	TTAA	2 cut(s)	183, 849
SatI	GCNGC	6 cut(s)	77, 219, 378, 735, 738, 741
Sau3AI	GATC	8 cut(s)	15, 60, 127, 172, 226, 244, 304, 613
ScrFI	CCNGG	1 cut(s)	516
SetI	ASST	9 cut(s)	115, 182, 237, 343, 374, 390, 418, 491, 502
SfcI	CTRYAG	1 cut(s)	738
Sfr274I	CTCGAG	1 cut(s)	336
SfuI	TTCGAA	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	236, 336
SmoI	CTYRAG	2 cut(s)	236, 336
Sse9I	AATT	5 cut(s)	94, 256, 409, 617, 678
SsiI	CCGC	6 cut(s)	77, 218, 270, 377, 734, 786
SspMI	CTAG	5 cut(s)	110, 125, 521, 531, 629
StyD4I	CCNGG	1 cut(s)	514
TaaI	ACNGT	2 cut(s)	394, 731
TaqI	TCGA	2 cut(s)	337, 659
TasI	AATT	5 cut(s)	94, 256, 409, 617, 678
TatI	WGTACW	1 cut(s)	842
TauI	GCSGC	4 cut(s)	79, 221, 380, 737
TfiI	GAWTC	2 cut(s)	332, 509
Tru1I	TTAA	2 cut(s)	183, 849
Tru9I	TTAA	2 cut(s)	183, 849
TscAI	CASTG	2 cut(s)	283, 678
TseI	GCWGC	2 cut(s)	737, 740
TspDTI	ATGAA	3 cut(s)	473, 486, 519
TspRI	CASTG	2 cut(s)	283, 678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XhoI	CTCGAG	1 cut(s)	336
XspI	CTAG	5 cut(s)	110, 125, 521, 531, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.