Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

51800626 .. 51803724

Gene Structure 3099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG263100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTGCTGTTTCCATCTTTCCTAGATGGGTTGGGAAGAACCATCTCGATCAAGAAGACCAAGAATTGCCATGGTGATGTGGCAAAGGAGACTGCAGAAGCATTGACGAAGGAAGCAAAAAAGAATGAGCTGGTTTTGAGTTCTTCTGGGATTGTTGACTCTGACAAGTCTAACAATTTTTCTTCTGTTTGCTCCAAGAGAGGCCAAAAGGGTATCAATCAGGATTGTTTAGTCATTTGGGAGGAATTTGGGTGCCAAGAAGACATGATCTTTTGTGGAGTGTTTGATGGGCATGGACAGTGGGGACATCTTGTTAGCAAAAGGGTCAGGCAATCTATGCCTTCTTCTTTGTTGTGCAATTGGCAAGAAACTCTCAGTTTAACATCACTTGACCTGAATTTTAAAATGGAGATGGATCGAAATCTCCATCGATATGATACATGGAAGCAGTCCTTTCTTAAAACATACGCTGCCATTGACCAGGAGCTTAAGCATTCTGCTAAAATCGATTCCTACCGAAGTGGTACTACAGCGTTGACAATTATTAAGCAGGGTGAACTTCTCATCATAGCACATGTTGGCGATTCTAGGGCTGTTTTGGCCTCCACTTCAGAAGATGGGAGCTTGGTACCTATCCAGCTTACAGTCGACTTCAAGCCTAACTTACCTCAGGAGGCTGAGAGAATCAGAAGGTCCAATGGACGAGTGTTTTGTCTACATGATGAACCGGGGACTTATAGGGTGTGGATGCCAAATGGCAAGACACCAGGACTGGCAGTATCAAGAGCTTTTGGTGACTATTGTGTTAAGGACTTTGGGCTTATTTCTGTGCCTGATGTGAGCCAAAGATACATAACCAGCAAGGACCAGTTTGTCATTCTAGCAACAGATGGGGTATGCATGCATTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

304

Amino Acids

34.0

Weight (kDa)

7.06

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	72 - 299	5.4e-33	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	872
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	2 cut(s)	252, 628
AccI	GTMKAC	2 cut(s)	648, 715
AclWI	GGATC	1 cut(s)	423
AcsI	RAATTY	2 cut(s)	245, 397
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	526, 630
AflII	CTTAAG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	480, 766
AluBI	AGCT	5 cut(s)	130, 487, 624, 640, 788
AluI	AGCT	5 cut(s)	130, 487, 624, 640, 788
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	423
AoxI	GGCC	2 cut(s)	202, 600
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	2 cut(s)	245, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	693, 725
Asp718I	GGTACC	1 cut(s)	628
AspS9I	GGNCC	2 cut(s)	693, 865
AsuC2I	CCSGG	1 cut(s)	729
AsuHPI	GGTGA	3 cut(s)	86, 566, 806
AvaII	GGWCC	2 cut(s)	693, 865
AxyI	CCTNAGG	1 cut(s)	669
BanI	GGYRCC	2 cut(s)	252, 628
BarI	GAAGNNNNNNTAC	2 cut(s)	511, 543
BbsI	GAAGAC	2 cut(s)	62, 267
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	8 cut(s)	20, 22, 50, 281, 406, 435, 611, 884
BciT130I	CCWGG	2 cut(s)	482, 768
BcnI	CCSGG	1 cut(s)	729
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	3 cut(s)	23, 588, 881
BfmI	CTRYAG	2 cut(s)	93, 528
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	482, 729, 768
Bme18I	GGWCC	2 cut(s)	693, 865
BmgT120I	GGNCC	2 cut(s)	693, 865
BmiI	GGNNCC	2 cut(s)	254, 630
BmrFI	CCNGG	3 cut(s)	482, 729, 768
BmsI	GCATC	1 cut(s)	738
BpiI	GAAGAC	2 cut(s)	62, 267
BpuMI	CCSGG	1 cut(s)	729
Bsa29I	ATCGAT	2 cut(s)	430, 507
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	70, 728
Bse1I	ACTGG	2 cut(s)	777, 868
Bse21I	CCTNAGG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	482, 768
BseCI	ATCGAT	2 cut(s)	430, 507
BseDI	CCNNGG	2 cut(s)	70, 728
BseGI	GGATG	1 cut(s)	753
BseJI	GATNNNNATC	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	388, 669, 683
BseNI	ACTGG	2 cut(s)	777, 868
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	2 cut(s)	204, 602
BshNI	GGYRCC	2 cut(s)	252, 628
BshVI	ATCGAT	2 cut(s)	430, 507
BsiSI	CCGG	1 cut(s)	728
BslFI	GGGAC	2 cut(s)	318, 745
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	318, 745
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	204, 602
Bsp143I	GATC	3 cut(s)	48, 267, 415
Bsp19I	CCATGG	1 cut(s)	70
BspANI	GGCC	2 cut(s)	204, 602
BspCNI	CTCAG	3 cut(s)	387, 670, 682
BspDI	ATCGAT	2 cut(s)	430, 507
BspLI	GGNNCC	2 cut(s)	254, 630
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	423
BspT107I	GGYRCC	2 cut(s)	252, 628
BspTI	CTTAAG	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	777, 868
BssECI	CCNNGG	2 cut(s)	70, 728
BssMI	GATC	3 cut(s)	48, 267, 415
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	2 cut(s)	482, 768
Bst4CI	ACNGT	2 cut(s)	300, 646
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	902
BstDEI	CTNAG	3 cut(s)	374, 669, 678
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	753
BstKTI	GATC	3 cut(s)	51, 270, 418
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	3 cut(s)	48, 267, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 599
BstNI	CCWGG	2 cut(s)	482, 768
BstNSI	RCATGY	2 cut(s)	578, 904
BstSCI	CCNGG	3 cut(s)	480, 727, 766
BstSFI	CTRYAG	2 cut(s)	93, 528
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	2 cut(s)	62, 267
Bsu15I	ATCGAT	2 cut(s)	430, 507
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	204, 602
BsuTUI	ATCGAT	2 cut(s)	430, 507
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	753
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	902
Cfr13I	GGNCC	2 cut(s)	693, 865
ClaI	ATCGAT	2 cut(s)	430, 507
Csp6I	GTAC	2 cut(s)	525, 629
CviAII	CATG	7 cut(s)	71, 265, 293, 441, 575, 719, 901
CviQI	GTAC	2 cut(s)	525, 629
DdeI	CTNAG	3 cut(s)	374, 669, 678
DpnI	GATC	3 cut(s)	50, 269, 417
DpnII	GATC	3 cut(s)	48, 267, 415
DraI	TTTAAA	1 cut(s)	403
DrdI	GACNNNNNNGTC	1 cut(s)	872
DseDI	GACNNNNNNGTC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	693, 865
Eco57I	CTGAAG	1 cut(s)	594
Eco81I	CCTNAGG	1 cut(s)	669
EcoRII	CCWGG	2 cut(s)	480, 766
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	2 cut(s)	902, 906
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	7 cut(s)	74, 268, 296, 444, 578, 722, 904
FalI	AAGNNNNNCTT	4 cut(s)	437, 469, 647, 679
FaqI	GGGAC	2 cut(s)	318, 745
FatI	CATG	7 cut(s)	70, 264, 292, 440, 574, 718, 900
FblI	GTMKAC	2 cut(s)	648, 715
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	760
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	3 cut(s)	23, 588, 881
GluI	GCNGC	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	204, 602
HapII	CCGG	1 cut(s)	728
Hin1II	CATG	7 cut(s)	74, 268, 296, 444, 578, 722, 904
HincII	GTYRAC	3 cut(s)	157, 537, 649
HindII	GTYRAC	3 cut(s)	157, 537, 649
HinfI	GANTC	4 cut(s)	158, 509, 584, 684
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	3 cut(s)	86, 566, 806
Hpy166II	GTNNAC	5 cut(s)	157, 537, 557, 649, 716
Hpy188I	TCNGA	3 cut(s)	163, 613, 689
Hpy188III	TCNNGA	5 cut(s)	46, 52, 221, 671, 783
Hpy8I	GTNNAC	5 cut(s)	157, 537, 557, 649, 716
HpyAV	CCTTC	3 cut(s)	103, 351, 684
HpyCH4III	ACNGT	2 cut(s)	300, 646
HpyCH4V	TGCA	4 cut(s)	95, 357, 900, 904
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 599
HpyF3I	CTNAG	3 cut(s)	374, 669, 678
Hsp92II	CATG	7 cut(s)	74, 268, 296, 444, 578, 722, 904
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	3 cut(s)	48, 267, 415
LmnI	GCTCC	3 cut(s)	197, 484, 621
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	738
MaeI	CTAG	3 cut(s)	23, 588, 881
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	3 cut(s)	50, 269, 417
MboI	GATC	3 cut(s)	48, 267, 415
MboII	GAAGA	8 cut(s)	48, 67, 135, 174, 272, 336, 626, 901
MfeI	CAATTG	1 cut(s)	358
MluCI	AATT	6 cut(s)	64, 175, 245, 358, 397, 540
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	194, 235, 613, 667, 678
Mph1103I	ATGCAT	2 cut(s)	902, 906
MseI	TTAA	6 cut(s)	380, 402, 459, 489, 546, 807
MslI	CAYNNNNRTG	2 cut(s)	75, 432
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	3 cut(s)	482, 729, 768
MunI	CAATTG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	482, 768
MwoI	GCNNNNNNNGC	2 cut(s)	337, 599
NciI	CCSGG	1 cut(s)	729
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	3 cut(s)	48, 267, 415
NlaIII	CATG	7 cut(s)	74, 268, 296, 444, 578, 722, 904
NlaIV	GGNNCC	2 cut(s)	254, 630
NmuCI	GTSAC	1 cut(s)	794
NsiI	ATGCAT	2 cut(s)	902, 906
NspI	RCATGY	2 cut(s)	578, 904
PaeI	GCATGC	1 cut(s)	904
PciI	ACATGT	1 cut(s)	574
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	3 cut(s)	509, 584, 684
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PscI	ACATGT	1 cut(s)	574
Psp6I	CCWGG	2 cut(s)	480, 766
PspGI	CCWGG	2 cut(s)	480, 766
PspN4I	GGNNCC	2 cut(s)	254, 630
PspPI	GGNCC	2 cut(s)	693, 865
PstI	CTGCAG	1 cut(s)	97
RsaI	GTAC	2 cut(s)	526, 630
RsaNI	GTAC	2 cut(s)	525, 629
RseI	CAYNNNNRTG	2 cut(s)	75, 432
SalI	GTCGAC	1 cut(s)	647
SaqAI	TTAA	6 cut(s)	380, 402, 459, 489, 546, 807
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	3 cut(s)	48, 267, 415
Sau96I	GGNCC	2 cut(s)	693, 865
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	482, 729, 768
SetI	ASST	9 cut(s)	132, 396, 489, 626, 634, 642, 670, 695, 790
SfaNI	GCATC	1 cut(s)	738
SfcI	CTRYAG	2 cut(s)	93, 528
SinI	GGWCC	2 cut(s)	693, 865
SmiMI	CAYNNNNRTG	2 cut(s)	75, 432
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SphI	GCATGC	1 cut(s)	904
Sse9I	AATT	6 cut(s)	64, 175, 245, 358, 397, 540
SspMI	CTAG	3 cut(s)	23, 588, 881
StyD4I	CCNGG	3 cut(s)	480, 727, 766
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	300, 646
TaqI	TCGA	5 cut(s)	47, 418, 430, 507, 648
TasI	AATT	6 cut(s)	64, 175, 245, 358, 397, 540
TfiI	GAWTC	3 cut(s)	509, 584, 684
Tru1I	TTAA	6 cut(s)	380, 402, 459, 489, 546, 807
Tru9I	TTAA	6 cut(s)	380, 402, 459, 489, 546, 807
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	1 cut(s)	738
TspRI	CASTG	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	693, 865
XapI	RAATTY	2 cut(s)	245, 397
XceI	RCATGY	2 cut(s)	578, 904
XmiI	GTMKAC	2 cut(s)	648, 715
XspI	CTAG	3 cut(s)	23, 588, 881
Zsp2I	ATGCAT	2 cut(s)	902, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.