pycom04g17430

phosphatase 2C

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
19830179 .. 19831891
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17430.3

Sequence Viewer

Length: 1125 bp
ATGGGGCACTTATCCTCCATGTTCAGCGGATTGGCGCGATCCCTATTGTTCAAGAAAGGGAAGAACAATGGTGGGGATTCAGGTGCAAGAGGAGCTGCAGAAGCGATGGCGAAGGAGGCGAAGAAGAATGACATGATCCTACGCTCTTCGGGGATTGTCAATGTCGATGGTTCAAATAACTTTGCTTCTGTTTTTTCGAAGAGAGGCGAGAAAGGAGTCAACCAGGATTGCTGCATTGTGTGGGAGGAATTTGGGTGCCAAGAAGACATGATGTTTTGTGGGATTTTTGACGGGCATGGTCCATGGGGACATTTCGTGGCGAAACAGATAAGAGAAACAATGCCACCCTCTTTGTTGTGCAGTTGGCAAGAGACACTAGGTCAAACTTCTATTGGCCCGGATTCGGACTTGGAGTCGGATAAAAAGCATCACCGGTTTAACATATGGAAGGATTCCTATATCAAAACTTGTGCTGCCATTGATCAGGAGCTCGAACAGCATCGTAGGATCGATTCCTTTTACAGTGGAACAACTGCCCTGAGTATTGTCAGACAGGGTGAGCTTATTTTCATAGCCAATGTTGGCGACTCTCGTGCTGTTTTGGCTACAACTTTAGACGATGGAAGCTTGATGCCGGTTCAGCTTACTGTCGATTTCAAGCCTAGTTTACCTCAGGAGGCGGAGCGAATAATTCAAAGCAATGGGCAGGTTTTTTGTTTAGATGATGAGCCTGGAGTGCAAAGGGTATGGCAGCCGGACGGGGAAACACCCGGACTAGCCATGTCCAGAGCCTTTGGAGATTACTGTTTGAAGGACTTTGGTCTCATTTCTGTGCCTGAAGTGTCACATAGAAATATAACAAGGAAAGATCAGTTTGTTGTGTTGGCAACTGATGGGGTTTGGGATGTTGTTTCGAATCAAGAAGCCGTGCAGATTGTAGGTTCCACGGCAGACAGGGCGAAGGCTGCAAGGCGTCTGGTGGAGTGCGCTGCGCAAGCATGGAAGCGGAAGAGGAGGGGAATAGCGATGGACGACATTTCTGCCATTTGCCTCTTCTTTCACTCTACTTCCCCTCTCTCTGAATCCCAGCAAGTGCACCCTATTAGTGTTGCCACCCCAAAATAA

Protein Analysis

375

Amino Acids

41.14

Weight (kDa)

5.89

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 993
Acc36I ACCTGC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 255
AccII CGCG 1 cut(s) 37
AciI CCGC 3 cut(s) 27, 680, 1006
AclWI GGATC 3 cut(s) 33, 130, 515
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 858
AcyI GRCGYC 1 cut(s) 973
AfiI CCNNNNNNNGG 1 cut(s) 403
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 5 cut(s) 52, 174, 658, 695, 811
AhdI GACNNNNNGTC 2 cut(s) 378, 412
AjnI CCWGG 2 cut(s) 222, 730
AluBI AGCT 5 cut(s) 95, 490, 562, 627, 643
AluI AGCT 5 cut(s) 95, 490, 562, 627, 643
Alw21I GWGCWC 2 cut(s) 492, 1098
Alw26I GTCTC 2 cut(s) 365, 827
Alw44I GTGCAC 1 cut(s) 1094
AlwI GGATC 3 cut(s) 33, 130, 515
AoxI GGCC 1 cut(s) 394
ApaLI GTGCAC 1 cut(s) 1094
ApeKI GCWGC 6 cut(s) 95, 231, 473, 751, 965, 989
ApoI RAATTY 1 cut(s) 248
AsiGI ACCGGT 1 cut(s) 432
AspLEI GCGC 3 cut(s) 37, 989, 994
AspS9I GGNCC 2 cut(s) 299, 395
AsuC2I CCSGG 2 cut(s) 398, 771
AsuHPI GGTGA 2 cut(s) 422, 569
AsuII TTCGAA 2 cut(s) 197, 914
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 2 cut(s) 9, 1098
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 2 cut(s) 492, 1098
BbvI GCAGC 6 cut(s) 82, 218, 460, 763, 952, 976
BccI CCATC 5 cut(s) 100, 161, 614, 887, 1021
BceAI ACGGC 2 cut(s) 911, 963
BcgI CGANNNNNNTGC 4 cut(s) 575, 609, 1022, 1056
BciT130I CCWGG 2 cut(s) 224, 732
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 2 cut(s) 398, 771
BcoDI GTCTC 2 cut(s) 365, 827
BfaI CTAG 3 cut(s) 377, 663, 776
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 697
BisI GCNGC 6 cut(s) 96, 232, 474, 752, 966, 990
BlsI GCNGC 6 cut(s) 97, 233, 475, 753, 967, 991
Bme1390I CCNGG 4 cut(s) 224, 398, 732, 771
Bme18I GGWCC 1 cut(s) 299
BmeRI GACNNNNNGTC 2 cut(s) 378, 412
BmgT120I GGNCC 2 cut(s) 299, 395
BmiI GGNNCC 2 cut(s) 257, 943
BmrFI CCNGG 4 cut(s) 224, 398, 732, 771
BmsI GCATC 3 cut(s) 436, 508, 621
BoxI GACNNNNGTC 1 cut(s) 819
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 753
Bpu14I TTCGAA 2 cut(s) 197, 914
BpuMI CCSGG 2 cut(s) 398, 771
Bsa29I ATCGAT 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 973
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 2 cut(s) 302, 945
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse118I RCCGGY 2 cut(s) 432, 634
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 1 cut(s) 706
BseBI CCWGG 2 cut(s) 224, 732
BseCI ATCGAT 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 302, 945
BseGI GGATG 1 cut(s) 910
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 2 cut(s) 530, 686
BseRI GAGGAG 2 cut(s) 105, 1027
BseSI GKGCMC 2 cut(s) 9, 1098
BseXI GCAGC 6 cut(s) 82, 218, 460, 763, 952, 976
BseYI CCCAGC 1 cut(s) 1086
BsgI GTGCAG 2 cut(s) 379, 950
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 255
BshTI ACCGGT 1 cut(s) 432
BshVI ATCGAT 1 cut(s) 510
BsiHKAI GWGCWC 2 cut(s) 492, 1098
BsiSI CCGG 5 cut(s) 398, 433, 635, 755, 771
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 2 cut(s) 365, 827
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 1 cut(s) 396
Bso31I GGTCTC 1 cut(s) 827
Bsp119I TTCGAA 2 cut(s) 197, 914
Bsp1286I GDGCHC 3 cut(s) 9, 492, 1098
Bsp143I GATC 5 cut(s) 38, 135, 481, 507, 868
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 3 cut(s) 27, 680, 1006
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 531, 685
BspDI ATCGAT 1 cut(s) 510
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 257, 943
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 3 cut(s) 33, 130, 515
BspQI GCTCTTC 1 cut(s) 151
BspT104I TTCGAA 2 cut(s) 197, 914
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 706
BsrFI RCCGGY 2 cut(s) 432, 634
BssAI RCCGGY 2 cut(s) 432, 634
BssECI CCNNGG 2 cut(s) 302, 945
BssMI GATC 5 cut(s) 38, 135, 481, 507, 868
BssNI GRCGYC 1 cut(s) 973
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 224, 732
Bst4CI ACNGT 3 cut(s) 524, 649, 806
Bst6I CTCTTC 4 cut(s) 151, 194, 1004, 1058
BstACI GRCGYC 1 cut(s) 973
BstBI TTCGAA 2 cut(s) 197, 914
BstC8I GCNNGC 1 cut(s) 996
BstDEI CTNAG 2 cut(s) 539, 672
BstDSI CCRYGG 2 cut(s) 302, 945
BstF5I GGATG 1 cut(s) 910
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 3 cut(s) 37, 989, 994
BstKTI GATC 5 cut(s) 41, 138, 484, 510, 871
BstMAI GTCTC 2 cut(s) 365, 827
BstMBI GATC 5 cut(s) 38, 135, 481, 507, 868
BstNI CCWGG 2 cut(s) 224, 732
BstPAI GACNNNNGTC 1 cut(s) 819
BstSCI CCNGG 4 cut(s) 222, 396, 730, 769
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 2 cut(s) 9, 1098
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 6 cut(s) 82, 218, 460, 763, 952, 976
BstV2I GAAGAC 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 510
Bsu36I CCTNAGG 1 cut(s) 672
BsuRI GGCC 1 cut(s) 396
BsuTUI ATCGAT 1 cut(s) 510
BtgI CCRYGG 2 cut(s) 302, 945
BtgZI GCGATG 2 cut(s) 119, 1040
BtsCI GGATG 1 cut(s) 910
BtsIMutI CAGTG 1 cut(s) 529
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 1 cut(s) 996
CfoI GCGC 3 cut(s) 37, 989, 994
Cfr10I RCCGGY 2 cut(s) 432, 634
Cfr13I GGNCC 2 cut(s) 299, 395
ClaI ATCGAT 1 cut(s) 510
CseI GACGC 1 cut(s) 962
CspAI ACCGGT 1 cut(s) 432
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 7 cut(s) 19, 133, 268, 296, 303, 781, 999
DdeI CTNAG 2 cut(s) 539, 672
DpnI GATC 5 cut(s) 40, 137, 483, 509, 870
DpnII GATC 5 cut(s) 38, 135, 481, 507, 868
DriI GACNNNNNGTC 2 cut(s) 378, 412
Eam1104I CTCTTC 4 cut(s) 151, 194, 1004, 1058
Eam1105I GACNNNNNGTC 2 cut(s) 378, 412
EarI CTCTTC 4 cut(s) 151, 194, 1004, 1058
EciI GGCGGA 1 cut(s) 695
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 827
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 858
Eco81I CCTNAGG 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 222, 730
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 7 cut(s) 22, 136, 271, 299, 306, 784, 1002
FaqI GGGAC 1 cut(s) 321
FatI CATG 7 cut(s) 18, 132, 267, 295, 302, 780, 998
FauNDI CATATG 1 cut(s) 443
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 6 cut(s) 96, 232, 474, 752, 966, 990
FokI GGATG 1 cut(s) 917
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 6 cut(s) 96, 232, 474, 752, 966, 990
FspBI CTAG 3 cut(s) 377, 663, 776
FspI TGCGCA 1 cut(s) 993
GlaI GCGC 3 cut(s) 36, 988, 993
GluI GCNGC 6 cut(s) 96, 232, 474, 752, 966, 990
GsaI CCCAGC 1 cut(s) 1090
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 1 cut(s) 396
HapII CCGG 5 cut(s) 398, 433, 635, 755, 771
HgaI GACGC 1 cut(s) 962
HhaI GCGC 3 cut(s) 37, 989, 994
Hin1I GRCGYC 1 cut(s) 973
Hin1II CATG 7 cut(s) 22, 136, 271, 299, 306, 784, 1002
Hin6I GCGC 3 cut(s) 35, 987, 992
HinP1I GCGC 3 cut(s) 35, 987, 992
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 9 cut(s) 77, 216, 401, 413, 452, 512, 587, 916, 1082
HpaII CCGG 5 cut(s) 398, 433, 635, 755, 771
HphI GGTGA 2 cut(s) 422, 569
Hpy166II GTNNAC 3 cut(s) 220, 668, 1096
Hpy188I TCNGA 4 cut(s) 406, 418, 551, 1081
Hpy188III TCNNGA 5 cut(s) 52, 485, 674, 786, 920
Hpy8I GTNNAC 3 cut(s) 220, 668, 1096
HpyAV CCTTC 4 cut(s) 106, 442, 805, 955
HpyCH4III ACNGT 3 cut(s) 524, 649, 806
HpyCH4V TGCA 8 cut(s) 86, 98, 234, 360, 739, 931, 968, 1096
HpyF3I CTNAG 2 cut(s) 539, 672
Hsp92I GRCGYC 1 cut(s) 973
Hsp92II CATG 7 cut(s) 22, 136, 271, 299, 306, 784, 1002
HspAI GCGC 3 cut(s) 35, 987, 992
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 5 cut(s) 38, 135, 481, 507, 868
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 92, 487, 682
Lsp1109I GCAGC 6 cut(s) 82, 218, 460, 763, 952, 976
LweI GCATC 3 cut(s) 436, 508, 621
MaeI CTAG 3 cut(s) 377, 663, 776
MaeIII GTNAC 1 cut(s) 843
MalI GATC 5 cut(s) 40, 137, 483, 509, 870
MboI GATC 5 cut(s) 38, 135, 481, 507, 868
MboII GAAGA 8 cut(s) 73, 133, 136, 138, 211, 275, 1021, 1045
MhlI GDGCHC 3 cut(s) 9, 492, 1098
MluCI AATT 2 cut(s) 248, 690
MlyI GAGTC 3 cut(s) 225, 422, 581
MmeI TCCRAC 1 cut(s) 396
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 830
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 5 cut(s) 398, 433, 635, 755, 771
MspR9I CCNGG 4 cut(s) 224, 398, 732, 771
MteI GCGCNGCGC 1 cut(s) 990
MvaI CCWGG 2 cut(s) 224, 732
MvnI CGCG 1 cut(s) 37
NciI CCSGG 2 cut(s) 398, 771
NcoI CCATGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 443
NdeII GATC 5 cut(s) 38, 135, 481, 507, 868
NlaIII CATG 7 cut(s) 22, 136, 271, 299, 306, 784, 1002
NlaIV GGNNCC 2 cut(s) 257, 943
NmuCI GTSAC 1 cut(s) 843
NsbI TGCGCA 1 cut(s) 993
NspV TTCGAA 2 cut(s) 197, 914
PciSI GCTCTTC 1 cut(s) 151
PfeI GAWTC 6 cut(s) 77, 401, 452, 512, 916, 1082
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 6 cut(s) 97, 233, 475, 753, 967, 991
PleI GAGTC 3 cut(s) 224, 421, 581
PpsI GAGTC 3 cut(s) 224, 421, 581
PshAI GACNNNNGTC 1 cut(s) 819
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 222, 730
PspFI CCCAGC 1 cut(s) 1086
PspGI CCWGG 2 cut(s) 222, 730
PspN4I GGNNCC 2 cut(s) 257, 943
PspPI GGNCC 2 cut(s) 299, 395
PstI CTGCAG 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 6 cut(s) 96, 232, 474, 752, 966, 990
Sau3AI GATC 5 cut(s) 38, 135, 481, 507, 868
Sau96I GGNCC 2 cut(s) 299, 395
SchI GAGTC 3 cut(s) 225, 422, 581
ScrFI CCNGG 4 cut(s) 224, 398, 732, 771
SduI GDGCHC 3 cut(s) 9, 492, 1098
SfaNI GCATC 3 cut(s) 436, 508, 621
SfcI CTRYAG 1 cut(s) 96
SfuI TTCGAA 2 cut(s) 197, 914
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 830
Sse9I AATT 2 cut(s) 248, 690
SsiI CCGC 3 cut(s) 27, 680, 1006
SspMI CTAG 3 cut(s) 377, 663, 776
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 4 cut(s) 222, 396, 730, 769
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 3 cut(s) 524, 649, 806
TaqI TCGA 6 cut(s) 165, 197, 492, 510, 651, 914
TasI AATT 2 cut(s) 248, 690
TfiI GAWTC 6 cut(s) 77, 401, 452, 512, 916, 1082
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 843
TseI GCWGC 6 cut(s) 95, 231, 473, 751, 965, 989
Tsp45I GTSAC 1 cut(s) 843
TspDTI ATGAA 1 cut(s) 559
TspRI CASTG 1 cut(s) 529
VneI GTGCAC 1 cut(s) 1094
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 248
XspI CTAG 3 cut(s) 377, 663, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.