Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

49370888 .. 49372914

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39310

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGATCTGGAATTTGGATTGTGTAGGAGTTATGGTGCTGTTTCCATCTTTCCTAGATGGGTTGGGAAGAACCATCTCGATCAAGAAGACCAAGAATTGCCATGGTGATGTGGCAAAGGAGACTGCAGAAGCATTGACAAAGGAAGCAAAAAAGAATGAGCTGGTTTTGAGTTCTTCTGGGATTGTTGACTCTGACAAGTCTAACAATTTTTCTTCTGTTTGCTCCAAGAGAGGCCAAAAGGGTATCAATCAGGATTGTTTAGTCATTTGGGAGGAATTTGGGTGCCAAGAAGACATGATCTTTTGTGGAGTGTTTGATGGGCATGGACAGTGGGGACATCTTGTTAGCAAAAGGGTCAGGCAATCTATGCCTTCTTCTTTGTTGTGCAATTGGCAAGAAACTCTCAGTTTAACATCACTTGACCTGAATTTTAAAATGGAGATGGATCGAAATCTCCATCGATATGATACATGGAAGCAGTCCCTTCTTAAAACATACGCTGCCATTGACCAGGAGCTTAAGCATTCTGCTAAAATCGATTCCTATCGAAGTGGTACTACAGCGTTGACAATTATTAAGCAGGGTGAACTTCTCATCATAGCACATGTTGGCGATTCTAGGGCTGTTTTGGCCTCCACTTCAGAAGATGGGAGCTTGGTACCTATCCAGCTTACAGTCGACTTCAAGCCTAACTTACCTCAGGAGGCTGAGAGAATCAGAAGGTCCAATGGACGAGTGTTTTGTCTACACGATGAACCGGGGACTTATAGGGTGTGGATGCCAAATGGCAAGACACCAGGACTGGCAGTATCAAGAGCTTTTGGTGACTATTGTGTTAAGGACTTTGGGCTTATTTCTGTGCCTGATGTGAGCCAAAGATACATAACCAGCAAGGACCAGTTTGTCATTCTAGCAACAGATGGGGTATGGGATGTTATTTCCAACAAAGAAGCTATACAGATAGTTTCTTCGGCACCAGATAGGAACAAAGCAGCAAAAAGACTGGTGGCATGTGCTGCTCTTGCATGGAAGTCTAAGAGAAGAGGCATTGCAATGGATGACATCTCCGCTATTTGCCTGTTCTTTCACCCCAACTCATCATCGCAACAAACCAACCCTTTGGTCTCTGAATATACTGGTGTGAAGACATCCGGGTGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

387

Amino Acids

42.9

Weight (kDa)

8.19

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	83 - 338	9.2e-42	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	902
Acc65I	GGTACC	1 cut(s)	658
AccB1I	GGYRCC	3 cut(s)	282, 658, 973
AccI	GTMKAC	2 cut(s)	678, 745
AciI	CCGC	1 cut(s)	1068
AclWI	GGATC	1 cut(s)	453
AcsI	RAATTY	3 cut(s)	10, 275, 427
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	2 cut(s)	556, 660
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	1 cut(s)	685
AjnI	CCWGG	2 cut(s)	510, 796
AluBI	AGCT	6 cut(s)	160, 517, 654, 670, 818, 953
AluI	AGCT	6 cut(s)	160, 517, 654, 670, 818, 953
Alw26I	GTCTC	2 cut(s)	113, 1129
AlwI	GGATC	1 cut(s)	453
AoxI	GGCC	2 cut(s)	232, 630
ApeKI	GCWGC	3 cut(s)	500, 992, 1016
ApoI	RAATTY	3 cut(s)	10, 275, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
Asp718I	GGTACC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	723, 895
AsuC2I	CCSGG	2 cut(s)	759, 1153
AsuHPI	GGTGA	4 cut(s)	116, 596, 836, 1079
AvaII	GGWCC	2 cut(s)	723, 895
AxyI	CCTNAGG	1 cut(s)	699
BanI	GGYRCC	3 cut(s)	282, 658, 973
BarI	GAAGNNNNNNTAC	2 cut(s)	541, 573
BbsI	GAAGAC	3 cut(s)	92, 297, 1151
BbvI	GCAGC	3 cut(s)	487, 1003, 1004
BccI	CCATC	8 cut(s)	50, 52, 80, 311, 436, 465, 641, 914
BciT130I	CCWGG	2 cut(s)	512, 798
BcnI	CCSGG	2 cut(s)	759, 1153
BcoDI	GTCTC	2 cut(s)	113, 1129
BfaI	CTAG	3 cut(s)	53, 618, 911
BfmI	CTRYAG	2 cut(s)	123, 558
BfrI	CTTAAG	1 cut(s)	518
BisI	GCNGC	3 cut(s)	501, 993, 1017
BlsI	GCNGC	3 cut(s)	502, 994, 1018
Bme1390I	CCNGG	4 cut(s)	512, 759, 798, 1153
Bme18I	GGWCC	2 cut(s)	723, 895
BmgT120I	GGNCC	2 cut(s)	723, 895
BmiI	GGNNCC	3 cut(s)	284, 660, 975
BmrFI	CCNGG	4 cut(s)	512, 759, 798, 1153
BmsI	GCATC	1 cut(s)	768
BpiI	GAAGAC	3 cut(s)	92, 297, 1151
BpuMI	CCSGG	2 cut(s)	759, 1153
Bsa29I	ATCGAT	2 cut(s)	460, 537
BsaBI	GATNNNNATC	2 cut(s)	450, 543
BsaI	GGTCTC	1 cut(s)	1129
BsaJI	CCNNGG	2 cut(s)	100, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bse1I	ACTGG	4 cut(s)	807, 898, 1008, 1141
Bse21I	CCTNAGG	1 cut(s)	699
Bse3DI	GCAATG	2 cut(s)	1047, 1059
Bse8I	GATNNNNATC	2 cut(s)	450, 543
BseBI	CCWGG	2 cut(s)	512, 798
BseCI	ATCGAT	2 cut(s)	460, 537
BseDI	CCNNGG	2 cut(s)	100, 758
BseGI	GGATG	4 cut(s)	783, 937, 1063, 1148
BseJI	GATNNNNATC	2 cut(s)	450, 543
BseMI	GCAATG	2 cut(s)	1047, 1059
BseMII	CTCAG	3 cut(s)	418, 699, 713
BseNI	ACTGG	4 cut(s)	807, 898, 1008, 1141
BseXI	GCAGC	3 cut(s)	487, 1003, 1004
BshFI	GGCC	2 cut(s)	234, 632
BshNI	GGYRCC	3 cut(s)	282, 658, 973
BshVI	ATCGAT	2 cut(s)	460, 537
BsiSI	CCGG	2 cut(s)	758, 1152
BslFI	GGGAC	3 cut(s)	348, 466, 775
BsmAI	GTCTC	2 cut(s)	113, 1129
BsmFI	GGGAC	3 cut(s)	348, 466, 775
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	234, 632
Bso31I	GGTCTC	1 cut(s)	1129
Bsp143I	GATC	4 cut(s)	3, 78, 297, 445
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	1068
BspANI	GGCC	2 cut(s)	234, 632
BspCNI	CTCAG	3 cut(s)	417, 700, 712
BspDI	ATCGAT	2 cut(s)	460, 537
BspLI	GGNNCC	3 cut(s)	284, 660, 975
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	453
BspT107I	GGYRCC	3 cut(s)	282, 658, 973
BspTI	CTTAAG	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	1129
BsrDI	GCAATG	2 cut(s)	1047, 1059
BsrI	ACTGG	4 cut(s)	807, 898, 1008, 1141
BssECI	CCNNGG	2 cut(s)	100, 758
BssMI	GATC	4 cut(s)	3, 78, 297, 445
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	512, 798
Bst4CI	ACNGT	2 cut(s)	330, 676
Bst6I	CTCTTC	1 cut(s)	1036
BstAFI	CTTAAG	1 cut(s)	518
BstAPI	GCANNNNNTGC	2 cut(s)	367, 1016
BstDEI	CTNAG	4 cut(s)	404, 699, 708, 1035
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	4 cut(s)	783, 937, 1063, 1148
BstKTI	GATC	4 cut(s)	6, 81, 300, 448
BstMAI	GTCTC	2 cut(s)	113, 1129
BstMBI	GATC	4 cut(s)	3, 78, 297, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	367, 629, 1016, 1022
BstNI	CCWGG	2 cut(s)	512, 798
BstNSI	RCATGY	2 cut(s)	608, 1014
BstSCI	CCNGG	4 cut(s)	510, 757, 796, 1151
BstSFI	CTRYAG	2 cut(s)	123, 558
BstV1I	GCAGC	3 cut(s)	487, 1003, 1004
BstV2I	GAAGAC	3 cut(s)	92, 297, 1151
BstXI	CCANNNNNNTGG	1 cut(s)	1120
Bsu15I	ATCGAT	2 cut(s)	460, 537
Bsu36I	CCTNAGG	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	234, 632
BsuTUI	ATCGAT	2 cut(s)	460, 537
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	1086
BtsCI	GGATG	4 cut(s)	783, 937, 1063, 1148
BtsIMutI	CAGTG	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	723, 895
ClaI	ATCGAT	2 cut(s)	460, 537
Csp6I	GTAC	2 cut(s)	555, 659
CviAII	CATG	7 cut(s)	101, 295, 323, 471, 605, 1011, 1026
CviQI	GTAC	2 cut(s)	555, 659
DdeI	CTNAG	4 cut(s)	404, 699, 708, 1035
DpnI	GATC	4 cut(s)	5, 80, 299, 447
DpnII	GATC	4 cut(s)	3, 78, 297, 445
DraI	TTTAAA	1 cut(s)	433
DrdI	GACNNNNNNGTC	1 cut(s)	902
DseDI	GACNNNNNNGTC	1 cut(s)	902
Eam1104I	CTCTTC	1 cut(s)	1036
EarI	CTCTTC	1 cut(s)	1036
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	1129
Eco47I	GGWCC	2 cut(s)	723, 895
Eco57I	CTGAAG	1 cut(s)	624
Eco81I	CCTNAGG	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	510, 796
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	7 cut(s)	104, 298, 326, 474, 608, 1014, 1029
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	3 cut(s)	348, 466, 775
FatI	CATG	7 cut(s)	100, 294, 322, 470, 604, 1010, 1025
FblI	GTMKAC	2 cut(s)	678, 745
Fnu4HI	GCNGC	3 cut(s)	501, 993, 1017
FokI	GGATG	4 cut(s)	790, 944, 1070, 1135
Fsp4HI	GCNGC	3 cut(s)	501, 993, 1017
FspBI	CTAG	3 cut(s)	53, 618, 911
GluI	GCNGC	3 cut(s)	501, 993, 1017
HaeIII	GGCC	2 cut(s)	234, 632
HapII	CCGG	2 cut(s)	758, 1152
Hin1II	CATG	7 cut(s)	104, 298, 326, 474, 608, 1014, 1029
HincII	GTYRAC	3 cut(s)	187, 567, 679
HindII	GTYRAC	3 cut(s)	187, 567, 679
HinfI	GANTC	4 cut(s)	188, 539, 614, 714
HpaII	CCGG	2 cut(s)	758, 1152
HphI	GGTGA	4 cut(s)	116, 596, 836, 1079
Hpy166II	GTNNAC	5 cut(s)	187, 567, 587, 679, 746
Hpy188I	TCNGA	4 cut(s)	193, 643, 719, 1129
Hpy188III	TCNNGA	6 cut(s)	7, 76, 82, 251, 701, 813
Hpy8I	GTNNAC	5 cut(s)	187, 567, 587, 679, 746
HpyAV	CCTTC	3 cut(s)	381, 494, 714
HpyCH4III	ACNGT	2 cut(s)	330, 676
HpyCH4V	TGCA	4 cut(s)	125, 387, 1025, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	367, 629, 1016, 1022
HpyF3I	CTNAG	4 cut(s)	404, 699, 708, 1035
Hsp92II	CATG	7 cut(s)	104, 298, 326, 474, 608, 1014, 1029
KpnI	GGTACC	1 cut(s)	662
Kzo9I	GATC	4 cut(s)	3, 78, 297, 445
LmnI	GCTCC	3 cut(s)	227, 514, 651
Lsp1109I	GCAGC	3 cut(s)	487, 1003, 1004
LweI	GCATC	1 cut(s)	768
MaeI	CTAG	3 cut(s)	53, 618, 911
MaeIII	GTNAC	1 cut(s)	824
MalI	GATC	4 cut(s)	5, 80, 299, 447
MboI	GATC	4 cut(s)	3, 78, 297, 445
MfeI	CAATTG	1 cut(s)	388
MluCI	AATT	7 cut(s)	10, 94, 205, 275, 388, 427, 570
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	966
MnlI	CCTC	6 cut(s)	224, 265, 643, 697, 708, 1037
MseI	TTAA	6 cut(s)	410, 432, 489, 519, 576, 837
MslI	CAYNNNNRTG	4 cut(s)	105, 462, 1052, 1153
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	2 cut(s)	758, 1152
MspR9I	CCNGG	4 cut(s)	512, 759, 798, 1153
MunI	CAATTG	1 cut(s)	388
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	2 cut(s)	512, 798
MwoI	GCNNNNNNNGC	4 cut(s)	367, 629, 1016, 1022
NciI	CCSGG	2 cut(s)	759, 1153
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	3, 78, 297, 445
NlaIII	CATG	7 cut(s)	104, 298, 326, 474, 608, 1014, 1029
NlaIV	GGNNCC	3 cut(s)	284, 660, 975
NmuCI	GTSAC	1 cut(s)	824
NspI	RCATGY	2 cut(s)	608, 1014
PciI	ACATGT	1 cut(s)	604
PctI	GAATGC	1 cut(s)	523
PfeI	GAWTC	3 cut(s)	539, 614, 714
PkrI	GCNGC	3 cut(s)	502, 994, 1018
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PscI	ACATGT	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	510, 796
PspGI	CCWGG	2 cut(s)	510, 796
PspN4I	GGNNCC	3 cut(s)	284, 660, 975
PspPI	GGNCC	2 cut(s)	723, 895
PstI	CTGCAG	1 cut(s)	127
RsaI	GTAC	2 cut(s)	556, 660
RsaNI	GTAC	2 cut(s)	555, 659
RseI	CAYNNNNRTG	4 cut(s)	105, 462, 1052, 1153
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	6 cut(s)	410, 432, 489, 519, 576, 837
SatI	GCNGC	3 cut(s)	501, 993, 1017
Sau3AI	GATC	4 cut(s)	3, 78, 297, 445
Sau96I	GGNCC	2 cut(s)	723, 895
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	4 cut(s)	512, 759, 798, 1153
SfaNI	GCATC	1 cut(s)	768
SfcI	CTRYAG	2 cut(s)	123, 558
SinI	GGWCC	2 cut(s)	723, 895
SmiMI	CAYNNNNRTG	4 cut(s)	105, 462, 1052, 1153
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	7 cut(s)	10, 94, 205, 275, 388, 427, 570
SsiI	CCGC	1 cut(s)	1068
SspMI	CTAG	3 cut(s)	53, 618, 911
StyD4I	CCNGG	4 cut(s)	510, 757, 796, 1151
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	330, 676
TaqI	TCGA	6 cut(s)	77, 448, 460, 537, 547, 678
TasI	AATT	7 cut(s)	10, 94, 205, 275, 388, 427, 570
TfiI	GAWTC	3 cut(s)	539, 614, 714
Tru1I	TTAA	6 cut(s)	410, 432, 489, 519, 576, 837
Tru9I	TTAA	6 cut(s)	410, 432, 489, 519, 576, 837
TscAI	CASTG	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	3 cut(s)	500, 992, 1016
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	1 cut(s)	768
TspRI	CASTG	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	723, 895
XapI	RAATTY	3 cut(s)	10, 275, 427
XceI	RCATGY	2 cut(s)	608, 1014
XmiI	GTMKAC	2 cut(s)	678, 745
XspI	CTAG	3 cut(s)	53, 618, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.