Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001883

Physical Location & Seq

Genomic Coordinates Reverse (-)

28218849 .. 28222269

Gene Structure 3421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G317600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGGCACTTCTCCTCCATGTTCAGTGGACTGGTGAGGTCGCTATCCATCAAGAAAGGGAAAAATAACCGTGGAAATTCTGATGCAAGAGATGCTGCTGAAGCAATGGCGAAGGAGGCGAAGAAGAATGACATGATACTGCGCTCTTCCGGGATTGTCAATGTTGATGGTTCAAACAATTTTGCTTCAGTTTTCTCAAAGAGAGGCCAGAAAGGAGTGAACCAGGACTGCTGTATTGTGTGGGAGGAATTTGGGTGCCAAGAGGACATGATGTTTTGTGGAATATTTGACGGGCATGGTCCATGGGGACATTTTGTGGCAAAAAGGATCAGAGAAACAATGCCACCCTCTTTGTTGTGTAGTTGGCAAGAGACACTAGCTCAAACTTCCCTCGATCCAGATTTGGACTTGGAATTGGATAAAAAGGGTCACCGGTTTAATATATGGAAGCATTCCTATATCAAAACTTGTGCTGCTATTGATCAGGAGCTTGATCGGCATCGTAGAATTGATTCCTTTTACAGCGGAACAACTGCCCTCTCTATTGTGAGACAGGGTGAACTTATTTTTATAGCAAATGTTGGTGATTCTCGTGCTGTTTTGGCTACCACTTCAGAAGATGGAAGCTTAGTGCCAGTTCAGCTTACTGTTGATTTCAAGCCCAGTTTACCTCAGGAGGCGGAGCGAATAATTCAAAGCAAAGGGCGGGTGTTCTGCTTAGATGATGAACCAGGGGTGCAAAGGGTGTGGCAGCCAGATGGGGAAACACCAGGACTTGCAATGTCTAGAGCCTTTGGAGATTACTGTGTGAAGGGCTTTGGGCTCATTTCTGTGCCTGAAGTGACACAGAGAAATATAACAAGCAGAGATCAATTTGTTGTGTTGGCAACTGATGGGGTTTGGGATGTTGTTTCAAATCAAGAAGCAGTGCAGATTGTAGGTTCAACAGCAGACAGGGCAAAGTCTGCTAAGCGTCTGGTGGAGTGTGCCGTGCATGCATGGAAGCGCAAGAGGAGGGGAATAGCAATGGATGATATTTCAGCCATTTGCCTCTTCTTTCATTCTTCCCCTTTGTCTGACCCTCAGCAAGTTCACCCAATCAGTATTGCCACACCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

374

Amino Acids

41.28

Weight (kDa)

6.76

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05640 AT3G05640 AT3G05640 AT5G27930 AT5G27930 AT5G27930
fragaria_vesca	FvH4_4g18870 FvH4_4g18870 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970 FvH4_6g06970
malus_domestica	MD04G1197100.v1.1 MD12G1210000.v1.1 MD13G1162500.v1.1
prunus_persica	Prupe.1G129800_v2.0.a1 Prupe.1G129800_v2.0.a1 Prupe.6G317600_v2.0.a1
pyrus_communis	pycom04g17430 pycom12g19740 pycom13g13880
rosa_chinensis	RchiOBHm_Chr3g0456511 RchiOBHm_Chr4g0423771
rosa_laevigata	RLG00000007534 RLG00000025299
rosa_multiflora	Rmu_sc0002607.1_g000008
rosa_roxburghii	Rroxscaffold_6G00422680
rosa_rugosa	Rorug03G0013400 Rorug03G0013400 Rorug03G0013400 Rorug04G0189900 Rorug04G0190000 Rorug04G0190100 Rorug04G0190200 Rorug04G0190300
rosa_samantha	Rh3AG074000 Rh3BG075900 Rh3CG075400 Rh3DG077700 Rh4AG249900 Rh4BG255100 Rh4CG263100 Rh4DG249400
rosa_wichuraiana	Rw3G006350 Rw4G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AciI	CCGC	3 cut(s)	525, 680, 706
AclWI	GGATC	2 cut(s)	335, 389
AcsI	RAATTY	2 cut(s)	76, 248
AcuI	CTGAAG	4 cut(s)	120, 171, 597, 858
AgeI	ACCGGT	1 cut(s)	432
AgsI	TTSAA	5 cut(s)	174, 658, 695, 915, 945
AjnI	CCWGG	3 cut(s)	222, 730, 769
AluBI	AGCT	4 cut(s)	380, 490, 627, 643
AluI	AGCT	4 cut(s)	380, 490, 627, 643
Alw26I	GTCTC	2 cut(s)	365, 544
AlwI	GGATC	2 cut(s)	335, 389
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	95, 473, 751
ApoI	RAATTY	2 cut(s)	76, 248
AsiGI	ACCGGT	1 cut(s)	432
Asp700I	GAANNNNTTC	1 cut(s)	511
AspLEI	GCGC	2 cut(s)	144, 1008
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	5 cut(s)	46, 422, 569, 596, 1085
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	672
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	825
BauI	CACGAG	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	1083
BbvI	GCAGC	3 cut(s)	82, 460, 763
BccI	CCATC	5 cut(s)	56, 161, 614, 752, 887
BceAI	ACGGC	1 cut(s)	974
BciT130I	CCWGG	3 cut(s)	224, 732, 771
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	365, 544
BfaI	CTAG	2 cut(s)	377, 786
BisI	GCNGC	3 cut(s)	96, 474, 752
BlpI	GCTNAGC	1 cut(s)	969
BlsI	GCNGC	3 cut(s)	97, 475, 753
Bme1390I	CCNGG	4 cut(s)	151, 224, 732, 771
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	4 cut(s)	151, 224, 732, 771
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	3 cut(s)	73, 82, 508
BmuI	ACTGGG	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	1083
Bpu1102I	GCTNAGC	1 cut(s)	969
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	70, 302, 731
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	3 cut(s)	36, 635, 663
Bse21I	CCTNAGG	1 cut(s)	672
Bse3DI	GCAATG	3 cut(s)	111, 786, 1032
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	3 cut(s)	224, 732, 771
BseDI	CCNNGG	3 cut(s)	70, 302, 731
BseGI	GGATG	2 cut(s)	910, 1036
BseJI	GATNNNNATC	1 cut(s)	498
BseMI	GCAATG	3 cut(s)	111, 786, 1032
BseMII	CTCAG	2 cut(s)	686, 1097
BseNI	ACTGG	3 cut(s)	36, 635, 663
BseRI	GAGGAG	2 cut(s)	4, 1027
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	82, 460, 763
BsgI	GTGCAG	1 cut(s)	950
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	150, 433
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	365, 544
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	9, 825
Bsp143I	GATC	5 cut(s)	327, 394, 481, 493, 868
Bsp1720I	GCTNAGC	1 cut(s)	969
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	3 cut(s)	525, 680, 706
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	685, 1096
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	2 cut(s)	335, 389
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	255
BsrDI	GCAATG	3 cut(s)	111, 786, 1032
BsrFI	RCCGGY	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	36, 635, 663
BssAI	RCCGGY	1 cut(s)	432
BssECI	CCNNGG	3 cut(s)	70, 302, 731
BssMI	GATC	5 cut(s)	327, 394, 481, 493, 868
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	3 cut(s)	224, 732, 771
Bst4CI	ACNGT	3 cut(s)	71, 649, 806
Bst6I	CTCTTC	2 cut(s)	151, 1058
BstAPI	GCANNNNNTGC	2 cut(s)	92, 965
BstC8I	GCNNGC	1 cut(s)	996
BstDEI	CTNAG	5 cut(s)	628, 672, 718, 969, 1083
BstDSI	CCRYGG	2 cut(s)	70, 302
BstEII	GGTNACC	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	910, 1036
BstHHI	GCGC	2 cut(s)	144, 1008
BstKTI	GATC	5 cut(s)	330, 397, 484, 496, 871
BstMAI	GTCTC	2 cut(s)	365, 544
BstMBI	GATC	5 cut(s)	327, 394, 481, 493, 868
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 101, 116, 496, 602, 640, 956, 965, 995
BstNI	CCWGG	3 cut(s)	224, 732, 771
BstNSI	RCATGY	1 cut(s)	998
BstPI	GGTNACC	1 cut(s)	428
BstSCI	CCNGG	4 cut(s)	149, 222, 730, 769
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	82, 460, 763
Bsu36I	CCTNAGG	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	70, 302
BtsCI	GGATG	2 cut(s)	910, 1036
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	2 cut(s)	31, 933
Cac8I	GCNNGC	1 cut(s)	996
CfoI	GCGC	2 cut(s)	144, 1008
Cfr10I	RCCGGY	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	962
CspAI	ACCGGT	1 cut(s)	432
CspCI	CAANNNNNGTGG	4 cut(s)	333, 368, 728, 763
CviAII	CATG	7 cut(s)	19, 133, 268, 296, 303, 995, 999
DdeI	CTNAG	5 cut(s)	628, 672, 718, 969, 1083
DpnI	GATC	5 cut(s)	329, 396, 483, 495, 870
DpnII	GATC	5 cut(s)	327, 394, 481, 493, 868
Eam1104I	CTCTTC	2 cut(s)	151, 1058
EarI	CTCTTC	2 cut(s)	151, 1058
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	4 cut(s)	120, 171, 597, 858
Eco81I	CCTNAGG	1 cut(s)	672
Eco91I	GGTNACC	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	428
EcoRII	CCWGG	3 cut(s)	222, 730, 769
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	7 cut(s)	22, 136, 271, 299, 306, 998, 1002
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	7 cut(s)	18, 132, 267, 295, 302, 994, 998
FauI	CCCGC	1 cut(s)	699
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	96, 474, 752
FokI	GGATG	2 cut(s)	917, 1043
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	3 cut(s)	96, 474, 752
FspBI	CTAG	2 cut(s)	377, 786
GlaI	GCGC	2 cut(s)	143, 1007
GluI	GCNGC	3 cut(s)	96, 474, 752
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	150, 433
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	2 cut(s)	144, 1008
Hin1II	CATG	7 cut(s)	22, 136, 271, 299, 306, 998, 1002
Hin6I	GCGC	2 cut(s)	142, 1006
HinP1I	GCGC	2 cut(s)	142, 1006
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	2 cut(s)	512, 587
HpaII	CCGG	2 cut(s)	150, 433
HphI	GGTGA	5 cut(s)	46, 422, 569, 596, 1085
Hpy166II	GTNNAC	5 cut(s)	29, 220, 560, 668, 1093
Hpy188I	TCNGA	4 cut(s)	82, 332, 616, 1078
Hpy188III	TCNNGA	6 cut(s)	52, 398, 485, 674, 786, 920
Hpy8I	GTNNAC	5 cut(s)	29, 220, 560, 668, 1093
HpyAV	CCTTC	2 cut(s)	106, 805
HpyCH4III	ACNGT	3 cut(s)	71, 649, 806
HpyCH4V	TGCA	6 cut(s)	86, 739, 779, 931, 994, 998
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 101, 116, 496, 602, 640, 956, 965, 995
HpyF3I	CTNAG	5 cut(s)	628, 672, 718, 969, 1083
Hsp92II	CATG	7 cut(s)	22, 136, 271, 299, 306, 998, 1002
HspAI	GCGC	2 cut(s)	142, 1006
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	327, 394, 481, 493, 868
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	487, 682
Lsp1109I	GCAGC	3 cut(s)	82, 460, 763
LweI	GCATC	3 cut(s)	73, 82, 508
MaeI	CTAG	2 cut(s)	377, 786
MaeIII	GTNAC	2 cut(s)	428, 841
MalI	GATC	5 cut(s)	329, 396, 483, 495, 870
MboI	GATC	5 cut(s)	327, 394, 481, 493, 868
MboII	GAAGA	6 cut(s)	133, 136, 138, 629, 1045, 1056
MhlI	GDGCHC	2 cut(s)	9, 825
MluCI	AATT	7 cut(s)	76, 178, 248, 413, 507, 690, 872
Mph1103I	ATGCAT	1 cut(s)	1000
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	830
MspA1I	CMGCKG	1 cut(s)	525
MspI	CCGG	2 cut(s)	150, 433
MspR9I	CCNGG	4 cut(s)	151, 224, 732, 771
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	3 cut(s)	224, 732, 771
MwoI	GCNNNNNNNGC	9 cut(s)	92, 101, 116, 496, 602, 640, 956, 965, 995
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	5 cut(s)	327, 394, 481, 493, 868
NlaIII	CATG	7 cut(s)	22, 136, 271, 299, 306, 998, 1002
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	2 cut(s)	428, 841
NsiI	ATGCAT	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	998
PaeI	GCATGC	1 cut(s)	998
PciSI	GCTCTTC	1 cut(s)	151
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	512, 587
PfoI	TCCNGGA	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	97, 475, 753
Psp6I	CCWGG	3 cut(s)	222, 730, 769
PspEI	GGTNACC	1 cut(s)	428
PspGI	CCWGG	3 cut(s)	222, 730, 769
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	830
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	3 cut(s)	96, 474, 752
Sau3AI	GATC	5 cut(s)	327, 394, 481, 493, 868
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	4 cut(s)	151, 224, 732, 771
SduI	GDGCHC	2 cut(s)	9, 825
SetI	ASST	7 cut(s)	41, 382, 492, 629, 645, 673, 943
SfaNI	GCATC	3 cut(s)	73, 82, 508
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	830
SphI	GCATGC	1 cut(s)	998
Sse9I	AATT	7 cut(s)	76, 178, 248, 413, 507, 690, 872
SsiI	CCGC	3 cut(s)	525, 680, 706
SspI	AATATT	1 cut(s)	285
SspMI	CTAG	2 cut(s)	377, 786
StyD4I	CCNGG	4 cut(s)	149, 222, 730, 769
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	3 cut(s)	71, 649, 806
TaqI	TCGA	1 cut(s)	393
TasI	AATT	7 cut(s)	76, 178, 248, 413, 507, 690, 872
TfiI	GAWTC	2 cut(s)	512, 587
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	31, 933
TseFI	GTSAC	2 cut(s)	428, 841
TseI	GCWGC	3 cut(s)	95, 473, 751
Tsp45I	GTSAC	2 cut(s)	428, 841
TspDTI	ATGAA	2 cut(s)	741, 1049
TspRI	CASTG	2 cut(s)	31, 933
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	2 cut(s)	76, 248
XbaI	TCTAGA	1 cut(s)	785
XceI	RCATGY	1 cut(s)	998
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	2 cut(s)	377, 786
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.