AT5G42250

Alcohol dehydrogenase-like 7

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
16893849 .. 16897690
3842 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42250.1

Sequence Viewer

Length: 1173 bp
ATGGAAAACGGAAACTCCTCCAGCGACAACAAATCTTCACATAAACCGATCCGATGCAAAGCGGCGGTTAGTAGGAAGGCTGGAGAGCCGTTGGTGATGGAAGAAATCATGGTGGCGCCGCCGCAGCCTTTCGAGGTTCGGATTCGAATCATCTGCACCGCGTTATGTCACAGTGACGTCACTTTCTGGAAACTCCAAGTTCCTCCAGCCTGCTTTCCGAGGATACTAGGCCACGAGGCAATAGGCGTAGTGGAAAGTGTTGGTGAAAATGTGAAGGAAGTGGTAGAAGGAGACACCGTACTACCAACGTTCATGCCTGACTGTGGTGACTGTGTTGATTGCAAATCTCACAAAAGCAACTTATGTAGCAAATTTCCTTTCAAGGTATCCCCTTGGATGCCAAGATACGATAATTCCAGCAGATTCACCGACCTCAATGGCGAAACTCTCTTTCATTTCTTGAACGTCTCCAGCTTCAGCGAATACACGGTTCTTGATGTCGCTAACGTTGTTAAGATTGATTCTTCGATTCCTCCTAGTCGTGCTTGCCTCCTAAGCTGCGGAGTCTCCACCGGTGTTGGTGCTGCTTGGGAGACCGCCAAAGTTGAAAAAGGATCAACCGTTGTGATTTTCGGACTTGGTTCTATCGGATTAGCGGTTGCAGAGGGTGCGAGACTTTGTGGTGCCTCTAGAATCATTGGTGTGGATATAAACCCTACCAAATTCCAAGTTGGCCAGAAATTTGGAGTTACCGAGTTTGTAAACTCTATGACATGTGAGAAAAACCGTGTTAGCGAGGTGATCAATGAGATGACTGATGGGGGAGCGGACTATTGCTTCGAATGTGTTGGAAGTAGTTCTTTGGTTCAAGAAGCTTATGCTTGCTGTAGACAGGGATGGGGAAAGACAATAACTTTAGGGGTGGACAAGCCGGGTTCACAAATATGTTTAGATTCGTTTGATGTTCTTCACCATGGGAAGATTCTGATGGGTTCGTTGTTTGGAGGTTTAAAGGCTAAAACACACATTCCAATTCTTCTTAAACGCTACTTGAGCAATGAACTTGAATTGGATAAGTTTGTGACACATGAGATGAAATTCGAGGAGATCAACGACGCATTCCAGCTACTTCTTGAAGGGAAATGCATCAGGTGTGTCTTATGGATGGGCTAA

Protein Analysis

390

Amino Acids

42.57

Weight (kDa)

5.9

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 43 - 174 7.4e-20 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 216 - 336 2.3e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccB1I GGYRCC 2 cut(s) 115, 683
AccBSI CCGCTC 1 cut(s) 827
AccI GTMKAC 1 cut(s) 889
AccII CGCG 1 cut(s) 161
AciI CCGC 9 cut(s) 62, 65, 119, 122, 159, 561, 597, 656, 827
AclI AACGTT 2 cut(s) 308, 507
AclWI GGATC 2 cut(s) 43, 622
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 4 cut(s) 371, 722, 740, 1097
AcuI CTGAAG 1 cut(s) 460
AcyI GRCGYC 2 cut(s) 116, 177
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 773
AgeI ACCGGT 1 cut(s) 572
AgsI TTSAA 6 cut(s) 382, 463, 608, 869, 1067, 1136
AluBI AGCT 4 cut(s) 474, 558, 875, 1126
AluI AGCT 4 cut(s) 474, 558, 875, 1126
Alw26I GTCTC 5 cut(s) 285, 472, 571, 587, 667
AlwI GGATC 2 cut(s) 43, 622
AoxI GGCC 2 cut(s) 229, 733
ApeKI GCWGC 3 cut(s) 124, 558, 584
ApoI RAATTY 4 cut(s) 371, 722, 740, 1097
ArsI GACNNNNNNTTYG 2 cut(s) 821, 853
AsiGI ACCGGT 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 856
AspLEI GCGC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 6 cut(s) 106, 275, 338, 418, 811, 962
AsuII TTCGAA 2 cut(s) 145, 840
BalI TGGCCA 1 cut(s) 735
BanI GGYRCC 2 cut(s) 115, 683
BauI CACGAG 1 cut(s) 233
BbvI GCAGC 3 cut(s) 136, 545, 571
BccI CCATC 5 cut(s) 91, 812, 891, 982, 1159
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BciVI GTATCC 2 cut(s) 216, 397
BclI TGATCA 1 cut(s) 801
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 5 cut(s) 285, 472, 571, 587, 667
BfaI CTAG 3 cut(s) 227, 537, 690
BfmI CTRYAG 1 cut(s) 886
BfoI RGCGCY 1 cut(s) 119
BfuI GTATCC 2 cut(s) 216, 397
BisI GCNGC 6 cut(s) 63, 119, 122, 125, 559, 585
BlsI GCNGC 6 cut(s) 64, 120, 123, 126, 560, 586
Bme1390I CCNGG 1 cut(s) 933
BmiI GGNNCC 2 cut(s) 117, 685
BmrFI CCNGG 1 cut(s) 933
BmsI GCATC 3 cut(s) 44, 387, 1155
BpmI CTGGAG 4 cut(s) 4, 102, 189, 454
Bpu10I CCTNAGC 1 cut(s) 554
Bpu14I TTCGAA 2 cut(s) 145, 840
BpuEI CTTGAG 1 cut(s) 1072
BpuMI CCSGG 1 cut(s) 933
BsaBI GATNNNNATC 1 cut(s) 146
BsaHI GRCGYC 2 cut(s) 116, 177
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 3 cut(s) 218, 392, 973
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 3 cut(s) 29, 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 572
Bse3DI GCAATG 1 cut(s) 1063
Bse8I GATNNNNATC 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 218, 392, 973
BseGI GGATG 3 cut(s) 402, 902, 1170
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 1 cut(s) 1063
BseRI GAGGAG 2 cut(s) 7, 1118
BseXI GCAGC 3 cut(s) 136, 545, 571
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 231, 735
BshNI GGYRCC 2 cut(s) 115, 683
BshTI ACCGGT 1 cut(s) 572
BsiSI CCGG 2 cut(s) 573, 932
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 5 cut(s) 285, 472, 571, 587, 667
BsmBI CGTCTC 1 cut(s) 472
BsmI GAATGC 1 cut(s) 1118
BsnI GGCC 2 cut(s) 231, 735
Bso31I GGTCTC 1 cut(s) 587
Bsp119I TTCGAA 2 cut(s) 145, 840
Bsp143I GATC 4 cut(s) 48, 614, 801, 1107
Bsp19I CCATGG 1 cut(s) 973
BspACI CCGC 9 cut(s) 62, 65, 119, 122, 159, 561, 597, 656, 827
BspANI GGCC 2 cut(s) 231, 735
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 2 cut(s) 117, 685
BspPI GGATC 2 cut(s) 43, 622
BspT104I TTCGAA 2 cut(s) 145, 840
BspT107I GGYRCC 2 cut(s) 115, 683
BspTNI GGTCTC 1 cut(s) 587
BsrBI CCGCTC 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 1063
BsrFI RCCGGY 1 cut(s) 572
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 3 cut(s) 218, 392, 973
BssMI GATC 4 cut(s) 48, 614, 801, 1107
BssNI GRCGYC 2 cut(s) 116, 177
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 392, 973
Bst2BI CACGAG 1 cut(s) 233
Bst4CI ACNGT 7 cut(s) 173, 298, 323, 332, 490, 622, 788
BstACI GRCGYC 2 cut(s) 116, 177
BstAPI GCANNNNNTGC 1 cut(s) 668
BstBI TTCGAA 2 cut(s) 145, 840
BstC8I GCNNGC 3 cut(s) 211, 547, 883
BstDEI CTNAG 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 973
BstF5I GGATG 3 cut(s) 402, 902, 1170
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 4 cut(s) 51, 617, 804, 1110
BstMAI GTCTC 5 cut(s) 285, 472, 571, 587, 667
BstMBI GATC 4 cut(s) 48, 614, 801, 1107
BstMWI GCNNNNNNNGC 4 cut(s) 124, 555, 668, 1053
BstNSI RCATGY 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 931
BstSFI CTRYAG 1 cut(s) 886
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 3 cut(s) 136, 545, 571
BstXI CCANNNNNNTGG 1 cut(s) 743
BsuI GTATCC 2 cut(s) 216, 397
BsuRI GGCC 2 cut(s) 231, 735
BtgI CCRYGG 1 cut(s) 973
BtsCI GGATG 3 cut(s) 402, 902, 1170
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 211, 547, 883
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 572
CseI GACGC 1 cut(s) 1124
Csp6I GTAC 1 cut(s) 299
CspAI ACCGGT 1 cut(s) 572
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 5 cut(s) 109, 313, 774, 974, 1088
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 1 cut(s) 554
DinI GGCGCC 1 cut(s) 117
DpnI GATC 4 cut(s) 50, 616, 803, 1109
DpnII GATC 4 cut(s) 48, 614, 801, 1107
DraI TTTAAA 1 cut(s) 1011
EaeI YGGCCR 1 cut(s) 733
Eco130I CCWWGG 2 cut(s) 392, 973
Eco31I GGTCTC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 460
EcoT14I CCWWGG 2 cut(s) 392, 973
EcoT22I ATGCAT 1 cut(s) 1148
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 2 cut(s) 392, 973
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 5 cut(s) 112, 316, 777, 977, 1091
FalI AAGNNNNNCTT 2 cut(s) 844, 876
FatI CATG 5 cut(s) 108, 312, 773, 973, 1087
FbaI TGATCA 1 cut(s) 801
FblI GTMKAC 1 cut(s) 889
Fnu4HI GCNGC 6 cut(s) 63, 119, 122, 125, 559, 585
FokI GGATG 2 cut(s) 409, 909
Fsp4HI GCNGC 6 cut(s) 63, 119, 122, 125, 559, 585
FspBI CTAG 3 cut(s) 227, 537, 690
GlaI GCGC 1 cut(s) 117
GluI GCNGC 6 cut(s) 63, 119, 122, 125, 559, 585
GsuI CTGGAG 4 cut(s) 4, 102, 189, 454
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 2 cut(s) 231, 735
HapII CCGG 2 cut(s) 573, 932
HgaI GACGC 1 cut(s) 1124
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 2 cut(s) 116, 177
Hin1II CATG 5 cut(s) 112, 316, 777, 977, 1091
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 873
HinfI GANTC 9 cut(s) 142, 147, 423, 521, 529, 564, 693, 953, 982
HpaII CCGG 2 cut(s) 573, 932
HphI GGTGA 6 cut(s) 106, 275, 338, 418, 811, 962
Hpy166II GTNNAC 4 cut(s) 763, 890, 925, 938
Hpy188I TCNGA 6 cut(s) 53, 141, 219, 635, 650, 987
Hpy188III TCNNGA 6 cut(s) 187, 460, 494, 690, 869, 1133
Hpy8I GTNNAC 4 cut(s) 763, 890, 925, 938
Hpy99I CGWCG 1 cut(s) 1118
HpyAV CCTTC 4 cut(s) 70, 268, 281, 1130
HpyCH4III ACNGT 7 cut(s) 173, 298, 323, 332, 490, 622, 788
HpyCH4IV ACGT 4 cut(s) 177, 308, 465, 507
HpyCH4V TGCA 5 cut(s) 57, 156, 342, 662, 1146
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 555, 668, 1053
HpyF3I CTNAG 1 cut(s) 554
HpySE526I ACGT 4 cut(s) 177, 308, 465, 507
Hsp92I GRCGYC 2 cut(s) 116, 177
Hsp92II CATG 5 cut(s) 112, 316, 777, 977, 1091
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 4 cut(s) 48, 614, 801, 1107
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 3 cut(s) 136, 545, 571
LweI GCATC 3 cut(s) 44, 387, 1155
MaeI CTAG 3 cut(s) 227, 537, 690
MaeII ACGT 4 cut(s) 177, 308, 465, 507
MaeIII GTNAC 6 cut(s) 167, 173, 178, 326, 748, 1081
MalI GATC 4 cut(s) 50, 616, 803, 1109
MbiI CCGCTC 1 cut(s) 827
MboI GATC 4 cut(s) 48, 614, 801, 1107
MboII GAAGA 6 cut(s) 27, 113, 516, 959, 991, 1028
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 7 cut(s) 371, 412, 722, 740, 1032, 1067, 1097
MluNI TGGCCA 1 cut(s) 735
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 1 cut(s) 573
MmeI TCCRAC 1 cut(s) 829
Mox20I TGGCCA 1 cut(s) 735
Mph1103I ATGCAT 1 cut(s) 1148
MroXI GAANNNNTTC 1 cut(s) 856
MscI TGGCCA 1 cut(s) 735
MseI TTAA 3 cut(s) 513, 1010, 1041
MslI CAYNNNNRTG 2 cut(s) 701, 943
Msp20I TGGCCA 1 cut(s) 735
MspI CCGG 2 cut(s) 573, 932
MspR9I CCNGG 1 cut(s) 933
Mva1269I GAATGC 1 cut(s) 1118
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 4 cut(s) 124, 555, 668, 1053
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 1 cut(s) 933
NcoI CCATGG 1 cut(s) 973
NdeII GATC 4 cut(s) 48, 614, 801, 1107
NlaIII CATG 5 cut(s) 112, 316, 777, 977, 1091
NlaIV GGNNCC 2 cut(s) 117, 685
NmuCI GTSAC 5 cut(s) 167, 173, 178, 326, 1081
NsiI ATGCAT 1 cut(s) 1148
NspI RCATGY 1 cut(s) 777
NspV TTCGAA 2 cut(s) 145, 840
PciI ACATGT 1 cut(s) 773
PctI GAATGC 1 cut(s) 1118
PdmI GAANNNNTTC 1 cut(s) 856
PfeI GAWTC 8 cut(s) 142, 147, 423, 521, 529, 693, 953, 982
PinAI ACCGGT 1 cut(s) 572
PkrI GCNGC 6 cut(s) 64, 120, 123, 126, 560, 586
PleI GAGTC 1 cut(s) 572
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 572
PscI ACATGT 1 cut(s) 773
Psp1406I AACGTT 2 cut(s) 308, 507
PspN4I GGNNCC 2 cut(s) 117, 685
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 2 cut(s) 701, 943
SaqAI TTAA 3 cut(s) 513, 1010, 1041
SatI GCNGC 6 cut(s) 63, 119, 122, 125, 559, 585
Sau3AI GATC 4 cut(s) 48, 614, 801, 1107
SchI GAGTC 1 cut(s) 573
ScrFI CCNGG 1 cut(s) 933
SfaNI GCATC 3 cut(s) 44, 387, 1155
SfcI CTRYAG 1 cut(s) 886
SfoI GGCGCC 1 cut(s) 117
SfuI TTCGAA 2 cut(s) 145, 840
SgrAI CRCCGGYG 1 cut(s) 572
SmiMI CAYNNNNRTG 2 cut(s) 701, 943
SmlI CTYRAG 1 cut(s) 1051
SmoI CTYRAG 1 cut(s) 1051
Sse9I AATT 7 cut(s) 371, 412, 722, 740, 1032, 1067, 1097
SsiI CCGC 9 cut(s) 62, 65, 119, 122, 159, 561, 597, 656, 827
SspDI GGCGCC 1 cut(s) 115
SspMI CTAG 3 cut(s) 227, 537, 690
StyD4I CCNGG 1 cut(s) 931
StyI CCWWGG 2 cut(s) 392, 973
TaaI ACNGT 7 cut(s) 173, 298, 323, 332, 490, 622, 788
TaiI ACGT 4 cut(s) 180, 311, 468, 510
TaqI TCGA 5 cut(s) 132, 145, 527, 840, 1101
TasI AATT 7 cut(s) 371, 412, 722, 740, 1032, 1067, 1097
TauI GCSGC 3 cut(s) 65, 121, 124
TfiI GAWTC 8 cut(s) 142, 147, 423, 521, 529, 693, 953, 982
Tru1I TTAA 3 cut(s) 513, 1010, 1041
Tru9I TTAA 3 cut(s) 513, 1010, 1041
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 5 cut(s) 167, 173, 178, 326, 1081
TseI GCWGC 3 cut(s) 124, 558, 584
Tsp45I GTSAC 5 cut(s) 167, 173, 178, 326, 1081
TspDTI ATGAA 4 cut(s) 301, 443, 1074, 1109
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 178
XapI RAATTY 4 cut(s) 371, 722, 740, 1097
XbaI TCTAGA 1 cut(s) 689
XceI RCATGY 1 cut(s) 777
XmiI GTMKAC 1 cut(s) 889
XmnI GAANNNNTTC 1 cut(s) 856
XspI CTAG 3 cut(s) 227, 537, 690
ZraI GACGTC 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.