Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

166126 .. 168938

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00290.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCCTAATGCCTTAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGCGCTTTAGCAATGGAGCATCAGAGATTGTCGGGTGGAAGCAGATGGAGAGGGAAGCCTATTCGATGCAGAGCTGCGGTGAGTCGGAAGGCAGCGGAGCCGCTAATTCTGGAAGAGATCCTGGTGGCGCCGCCAATGCCTCATGAAGTCCGCATCCGAATTATCTGTACCTCTCTCTGCCACAGCGATATCACTTTCTGGAAAATGAAGGACTTTCCTGCAATTTTCCCCAGAATTCTTGGTCACGAAGCTGTGGGGGTTGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTCTCAGAAGGAGATACTGTCATCCCAACTTTCATGCCAGAATGTGGAGAATGCGTAGATTGCAAATCCACAAAGAGCCACCTATGTACAAAACTCCCCTTCAAGCTCTCACCTTTTATGCCAAGACACGAGACTAGCCGATTCACAGACCTCAATGGGGAGGTTCTATACCATTTTTTGTCCGTGTCTAGTTTTTCAGAGTATACAGTGGTTGACGTAGCCCATGTCACAAAAATTGACCCTGCAGTACCTCCAAATAGGGCATGCCTTCTCGGCTGTGGAGTATCAACAGGAGTTGGAGCTGCTTGGAAGACAGCAAATGTGGAGAAGGGATCAACTGTTGCTATATTTGGGCTAGGTTCAATTGGATTAGCTGTCGCAGAGGGAGCAAGACTTTGTGGAGCTACTAGAATTATTGGAGTGGATGTGAATCCGGACAAATTTGAAATTGGAAAGAAGTTGGGCCTCACCGACTTTGTGAATGCTGCAACTTGTGAGAATAAATCTGCGAGCCAGGTGATCATTGAGATGACTGGCGGGGGTGCAGACTATTGCTTTGAATGTGTTGGACTGGCATCATTGGTGCAAGAAGCTTATGCTTGTAGCCGAAAGGGTTGGGGAAAAACAATCGTGTTAGGTGTGGACAAACCAGGGTCAAAGGTGAGCCTTCCCTCTAGTGATATCCTTCACAGCGGCAAAACCCTCATGGGATCCTTATTCGGAGGACTCAAACCTAAATCGGATATCCCTGCTCTCATCAATCGTTACATGGACAAGGAACTACAACTGGATGAGTTTGTGACACATGAGGTGAGGTTTGAAGACATCAACAAAGCTTTCGATTTGCTCATTGAAGGGCAATGCCTTCGATGTGTAATCTATATGAGCAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

416

Amino Acids

45.36

Weight (kDa)

6.25

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	554
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	7 cut(s)	137, 155, 161, 191, 211, 888, 1044
AclWI	GGATC	4 cut(s)	172, 691, 1056, 1069
AcsI	RAATTY	2 cut(s)	294, 791
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	3 cut(s)	229, 439, 600
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	395, 508
AgsI	TTSAA	6 cut(s)	454, 714, 797, 911, 1172, 1205
AjnI	CCWGG	3 cut(s)	180, 864, 1000
AluBI	AGCT	8 cut(s)	134, 311, 457, 653, 725, 755, 944, 1187
AluI	AGCT	8 cut(s)	134, 311, 457, 653, 725, 755, 944, 1187
Alw26I	GTCTC	2 cut(s)	358, 476
AlwI	GGATC	4 cut(s)	172, 691, 1056, 1069
Aor13HI	TCCGGA	1 cut(s)	784
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	4 cut(s)	134, 152, 653, 836
ApoI	RAATTY	2 cut(s)	294, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	890, 922
AspLEI	GCGC	2 cut(s)	65, 190
AspS9I	GGNCC	1 cut(s)	814
AsuHPI	GGTGA	6 cut(s)	151, 453, 811, 880, 1024, 1174
BamHI	GGATCC	1 cut(s)	1061
BanI	GGYRCC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	668, 1179
BbvI	GCAGC	4 cut(s)	121, 164, 640, 823
BccI	CCATC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	1199, 1233
BciT130I	CCWGG	3 cut(s)	182, 866, 1002
BclI	TGATCA	1 cut(s)	870
BcoDI	GTCTC	2 cut(s)	358, 476
BfaI	CTAG	5 cut(s)	486, 540, 707, 759, 1026
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	2 cut(s)	66, 191
BglI	GCCNNNNNGGC	1 cut(s)	624
BisI	GCNGC	7 cut(s)	135, 153, 161, 191, 654, 837, 1045
BlsI	GCNGC	7 cut(s)	136, 154, 162, 192, 655, 838, 1046
Bme1390I	CCNGG	3 cut(s)	182, 866, 1002
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	3 cut(s)	159, 189, 1063
BmrFI	CCNGG	3 cut(s)	182, 866, 1002
BmsI	GCATC	4 cut(s)	88, 116, 222, 935
BpiI	GAAGAC	2 cut(s)	668, 1179
BsaBI	GATNNNNATC	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	1001
BsaWI	WCCGGW	1 cut(s)	784
BsaXI	ACNNNNNCTCC	6 cut(s)	354, 384, 390, 420, 762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 508
Bse1I	ACTGG	3 cut(s)	889, 927, 1143
Bse3DI	GCAATG	3 cut(s)	78, 1217, 1246
Bse8I	GATNNNNATC	1 cut(s)	780
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	3 cut(s)	182, 866, 1002
BseDI	CCNNGG	1 cut(s)	1001
BseGI	GGATG	5 cut(s)	213, 346, 372, 781, 1147
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	395, 508
BseMI	GCAATG	3 cut(s)	78, 1217, 1246
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	3 cut(s)	889, 927, 1143
BseXI	GCAGC	4 cut(s)	121, 164, 640, 823
BsgI	GTGCAG	1 cut(s)	915
BshFI	GGCC	1 cut(s)	816
BshNI	GGYRCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	785
BslI	CCNNNNNNNGG	2 cut(s)	395, 508
BsmAI	GTCTC	2 cut(s)	358, 476
BsmI	GAATGC	2 cut(s)	407, 838
BsnI	GGCC	1 cut(s)	816
Bso31I	GGTCTC	1 cut(s)	358
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	437
Bsp143I	GATC	4 cut(s)	177, 683, 870, 1061
BspACI	CCGC	7 cut(s)	137, 155, 161, 191, 211, 888, 1044
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	1 cut(s)	368
BspEI	TCCGGA	1 cut(s)	784
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	159, 189, 1063
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	4 cut(s)	172, 691, 1056, 1069
BspT107I	GGYRCC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	3 cut(s)	78, 1217, 1246
BsrGI	TGTACA	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	889, 927, 1143
BssECI	CCNNGG	1 cut(s)	1001
BssMI	GATC	4 cut(s)	177, 683, 870, 1061
BssNAI	GTATAC	1 cut(s)	555
BssNI	GRCGYC	1 cut(s)	188
BssSI	CACGAG	1 cut(s)	479
Bst1107I	GTATAC	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	3 cut(s)	182, 866, 1002
Bst4CI	ACNGT	3 cut(s)	370, 559, 691
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	437
BstC8I	GCNNGC	3 cut(s)	61, 616, 862
BstDEI	CTNAG	1 cut(s)	355
BstF5I	GGATG	5 cut(s)	213, 346, 372, 781, 1147
BstH2I	RGCGCY	2 cut(s)	66, 191
BstHHI	GCGC	2 cut(s)	65, 190
BstKTI	GATC	4 cut(s)	180, 686, 873, 1064
BstMAI	GTCTC	2 cut(s)	358, 476
BstMBI	GATC	4 cut(s)	177, 683, 870, 1061
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 411, 624, 737
BstNI	CCWGG	3 cut(s)	182, 866, 1002
BstNSI	RCATGY	1 cut(s)	618
BstSCI	CCNGG	3 cut(s)	180, 864, 1000
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	121, 164, 640, 823
BstV2I	GAAGAC	2 cut(s)	668, 1179
BstX2I	RGATCY	2 cut(s)	177, 1061
BstYI	RGATCY	2 cut(s)	177, 1061
BstZ17I	GTATAC	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	816
BtsCI	GGATG	5 cut(s)	213, 346, 372, 781, 1147
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	3 cut(s)	61, 616, 862
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	65, 190
Cfr13I	GGNCC	1 cut(s)	814
Csp6I	GTAC	3 cut(s)	228, 438, 599
CviAII	CATG	7 cut(s)	203, 385, 575, 615, 1057, 1120, 1157
CviQI	GTAC	3 cut(s)	228, 438, 599
DdeI	CTNAG	1 cut(s)	355
DinI	GGCGCC	1 cut(s)	189
DpnI	GATC	4 cut(s)	179, 685, 872, 1063
DpnII	GATC	4 cut(s)	177, 683, 870, 1061
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	358
Eco32I	GATATC	3 cut(s)	250, 1033, 1096
Eco47III	AGCGCT	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	3 cut(s)	180, 864, 1000
EcoRV	GATATC	3 cut(s)	250, 1033, 1096
EgeI	GGCGCC	1 cut(s)	189
EheI	GGCGCC	1 cut(s)	189
FaeI	CATG	7 cut(s)	206, 388, 578, 618, 1060, 1123, 1160
FatI	CATG	7 cut(s)	202, 384, 574, 614, 1056, 1119, 1156
FauI	CCCGC	1 cut(s)	881
FbaI	TGATCA	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	7 cut(s)	135, 153, 161, 191, 654, 837, 1045
FokI	GGATG	5 cut(s)	200, 353, 359, 788, 1154
Fsp4HI	GCNGC	7 cut(s)	135, 153, 161, 191, 654, 837, 1045
FspBI	CTAG	5 cut(s)	486, 540, 707, 759, 1026
GlaI	GCGC	2 cut(s)	64, 189
GluI	GCNGC	7 cut(s)	135, 153, 161, 191, 654, 837, 1045
HaeII	RGCGCY	2 cut(s)	66, 191
HaeIII	GGCC	1 cut(s)	816
HapII	CCGG	1 cut(s)	785
HhaI	GCGC	2 cut(s)	65, 190
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	7 cut(s)	206, 388, 578, 618, 1060, 1123, 1160
Hin6I	GCGC	2 cut(s)	63, 188
HinP1I	GCGC	2 cut(s)	63, 188
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	2 cut(s)	942, 1185
HinfI	GANTC	4 cut(s)	142, 492, 781, 1077
HpaII	CCGG	1 cut(s)	785
HphI	GGTGA	6 cut(s)	151, 453, 811, 880, 1024, 1174
Hpy166II	GTNNAC	3 cut(s)	555, 565, 994
Hpy188I	TCNGA	7 cut(s)	84, 147, 218, 358, 550, 1073, 1093
Hpy188III	TCNNGA	5 cut(s)	170, 203, 259, 305, 785
Hpy8I	GTNNAC	3 cut(s)	555, 565, 994
HpyCH4III	ACNGT	3 cut(s)	370, 559, 691
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	7 cut(s)	129, 281, 414, 596, 839, 896, 937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 411, 624, 737
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	7 cut(s)	206, 388, 578, 618, 1060, 1123, 1160
HspAI	GCGC	2 cut(s)	63, 188
KasI	GGCGCC	1 cut(s)	187
Kpn2I	TCCGGA	1 cut(s)	784
Ksp22I	TGATCA	1 cut(s)	870
Kzo9I	GATC	4 cut(s)	177, 683, 870, 1061
LmnI	GCTCC	5 cut(s)	76, 157, 650, 737, 752
Lsp1109I	GCAGC	4 cut(s)	121, 164, 640, 823
LweI	GCATC	4 cut(s)	88, 116, 222, 935
MaeI	CTAG	5 cut(s)	486, 540, 707, 759, 1026
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	4 cut(s)	302, 577, 1115, 1150
MalI	GATC	4 cut(s)	179, 685, 872, 1063
MboI	GATC	4 cut(s)	177, 683, 870, 1061
MboII	GAAGA	3 cut(s)	185, 673, 1184
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	2 cut(s)	177, 1061
MluCI	AATT	9 cut(s)	165, 219, 282, 294, 585, 714, 762, 791, 798
Mly113I	GGCGCC	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	151, 1071
MmeI	TCCRAC	3 cut(s)	125, 628, 898
MroI	TCCGGA	1 cut(s)	784
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	878
MspA1I	CMGCKG	2 cut(s)	155, 1044
MspI	CCGG	1 cut(s)	785
MspR9I	CCNGG	3 cut(s)	182, 866, 1002
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	2 cut(s)	407, 838
MvaI	CCWGG	3 cut(s)	182, 866, 1002
MwoI	GCNNNNNNNGC	4 cut(s)	196, 411, 624, 737
NarI	GGCGCC	1 cut(s)	188
NdeII	GATC	4 cut(s)	177, 683, 870, 1061
NlaIII	CATG	7 cut(s)	206, 388, 578, 618, 1060, 1123, 1160
NlaIV	GGNNCC	3 cut(s)	159, 189, 1063
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	3 cut(s)	302, 577, 1150
NspI	RCATGY	1 cut(s)	618
PaeI	GCATGC	1 cut(s)	618
PagI	TCATGA	1 cut(s)	202
PctI	GAATGC	2 cut(s)	407, 838
PfeI	GAWTC	2 cut(s)	492, 781
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	7 cut(s)	136, 154, 162, 192, 655, 838, 1046
PleI	GAGTC	2 cut(s)	150, 1071
PluTI	GGCGCC	1 cut(s)	191
PpsI	GAGTC	2 cut(s)	150, 1071
Psp6I	CCWGG	3 cut(s)	180, 864, 1000
PspGI	CCWGG	3 cut(s)	180, 864, 1000
PspN4I	GGNNCC	3 cut(s)	159, 189, 1063
PspPI	GGNCC	1 cut(s)	814
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	2 cut(s)	177, 1061
RsaI	GTAC	3 cut(s)	229, 439, 600
RsaNI	GTAC	3 cut(s)	228, 438, 599
RseI	CAYNNNNRTG	1 cut(s)	878
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	7 cut(s)	135, 153, 161, 191, 654, 837, 1045
Sau3AI	GATC	4 cut(s)	177, 683, 870, 1061
Sau96I	GGNCC	1 cut(s)	814
SchI	GAGTC	2 cut(s)	151, 1071
ScrFI	CCNGG	3 cut(s)	182, 866, 1002
SfaNI	GCATC	4 cut(s)	88, 116, 222, 935
SfcI	CTRYAG	1 cut(s)	594
SfoI	GGCGCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	878
SphI	GCATGC	1 cut(s)	618
Sse9I	AATT	9 cut(s)	165, 219, 282, 294, 585, 714, 762, 791, 798
SsiI	CCGC	7 cut(s)	137, 155, 161, 191, 211, 888, 1044
SspDI	GGCGCC	1 cut(s)	187
SspMI	CTAG	5 cut(s)	486, 540, 707, 759, 1026
StyD4I	CCNGG	3 cut(s)	180, 864, 1000
TaaI	ACNGT	3 cut(s)	370, 559, 691
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	3 cut(s)	124, 1191, 1219
TasI	AATT	9 cut(s)	165, 219, 282, 294, 585, 714, 762, 791, 798
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	3 cut(s)	163, 193, 1047
TfiI	GAWTC	2 cut(s)	492, 781
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	3 cut(s)	302, 577, 1150
TseI	GCWGC	4 cut(s)	134, 152, 653, 836
Tsp45I	GTSAC	3 cut(s)	302, 577, 1150
TspDTI	ATGAA	3 cut(s)	219, 281, 373
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	294, 791
XceI	RCATGY	1 cut(s)	618
XmiI	GTMKAC	1 cut(s)	554
XspI	CTAG	5 cut(s)	486, 540, 707, 759, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.