Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Forward (+)

47923712 .. 47927558

Gene Structure 3847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0327000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTTGCGTAGACGGTAGCCCAGCTGCTCGTGCTGGTATTCATGAGGGAGATGAGTTGGTTGAAATTAACGTGAGAAGTTTAATGCATGGTGTTGACACTGAAGCAGCAGTACAGAAGCTTAGAGGCCGAGTTGGAACAACTGTTACAGTAAAAGTTCACAGTGGCAATGATTTGGGAAGTGATGCTAGTATAAGAGAGGTGAAATTACCTCAGGAGTTCATTAAGGTTTCCCCAATTTCAACTGCAATCATCCCTCATAGAACCCCAGATGGACATTTAACAAAGACGGGTTATGTGAAGCTGTCAGCCTTCTCTCAGACTGCTGCAGCTGATATGGAAAATGCTATCAAGGAAATGAAGAGTCAGGGTGTACATTCATACATACTGGATTTGAGGAACAATCCGATCCAGTGCTATATATTGGCAGGGATTGCTTCTGCTGTGGCAGGGTTGAGTGCACCATATGAGAAGGCTTCTCATGTACATGAAAGGCCAGACGTGAATTGGCTATGGGCAGCTGGGTGTCATCCTTTTGGACCATTTTATAGCCACAGACAGCGGATAATAAGTTGGATTGATGGCACAGGACAGCTATCAGCTACATTTGACTTCACAACCAAGGGAGTTCTTCAGGTATCATCCATTTTCAATCGGTCTGAGATGTTTGACTCCCAGCTGACTGCTACACCCACATATGCACACATAAAATCTCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

240

Amino Acids

26.04

Weight (kDa)

6.83

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDZ_6	PF17820	4 - 53	2.1e-07	PDZ domain
Peptidase_S41	PF03572	96 - 136	2.1e-09	Peptidase family S41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	562
AclWI	GGATC	1 cut(s)	403
AcuI	CTGAAG	2 cut(s)	123, 617
AfaI	GTAC	3 cut(s)	114, 375, 486
AgsI	TTSAA	3 cut(s)	65, 243, 652
AjiI	CACGTC	1 cut(s)	502
AluBI	AGCT	8 cut(s)	26, 121, 304, 332, 521, 595, 602, 679
AluI	AGCT	8 cut(s)	26, 121, 304, 332, 521, 595, 602, 679
Alw21I	GWGCWC	1 cut(s)	463
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	2 cut(s)	127, 494
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	5 cut(s)	26, 107, 326, 329, 518
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	539
AxyI	CCTNAGG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	463
BarI	GAAGNNNNNNTAC	2 cut(s)	96, 128
BauI	CACGAG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	5 cut(s)	13, 119, 313, 341, 530
BccI	CCATC	2 cut(s)	266, 575
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	5 cut(s)	27, 108, 327, 330, 519
BlsI	GCNGC	5 cut(s)	28, 109, 328, 331, 520
Bme18I	GGWCC	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	539
BmsI	GCATC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	621
Bse1I	ACTGG	2 cut(s)	393, 412
Bse21I	CCTNAGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	3 cut(s)	252, 529, 641
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	227, 332, 651
BseNI	ACTGG	2 cut(s)	393, 412
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	5 cut(s)	13, 119, 313, 341, 530
BseYI	CCCAGC	3 cut(s)	22, 521, 675
BshFI	GGCC	2 cut(s)	129, 496
BsiHKAI	GWGCWC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	129, 496
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1407I	TGTACA	2 cut(s)	373, 484
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	562
BspANI	GGCC	2 cut(s)	129, 496
BspCNI	CTCAG	3 cut(s)	226, 331, 652
BspHI	TCATGA	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	2 cut(s)	373, 484
BsrI	ACTGG	2 cut(s)	393, 412
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	1 cut(s)	408
BssSI	CACGAG	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	30
Bst4CI	ACNGT	4 cut(s)	17, 145, 151, 164
Bst6I	CTCTTC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstAUI	TGTACA	2 cut(s)	373, 484
BstDEI	CTNAG	4 cut(s)	122, 213, 318, 660
BstF5I	GGATG	3 cut(s)	252, 529, 641
BstKTI	GATC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 434
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	5 cut(s)	13, 119, 313, 341, 530
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	129, 496
BtrI	CACGTC	1 cut(s)	502
BtsCI	GGATG	3 cut(s)	252, 529, 641
BtsIMutI	CAGTG	3 cut(s)	99, 169, 419
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	539
Csp6I	GTAC	3 cut(s)	113, 374, 485
CviAII	CATG	4 cut(s)	44, 89, 482, 488
CviQI	GTAC	3 cut(s)	113, 374, 485
DdeI	CTNAG	4 cut(s)	122, 213, 318, 660
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	2 cut(s)	123, 617
Eco81I	CCTNAGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	621
EcoT22I	ATGCAT	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	4 cut(s)	47, 92, 485, 491
FatI	CATG	4 cut(s)	43, 88, 481, 487
FauNDI	CATATG	2 cut(s)	466, 697
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	27, 108, 327, 330, 519
FokI	GGATG	3 cut(s)	239, 516, 628
Fsp4HI	GCNGC	5 cut(s)	27, 108, 327, 330, 519
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	5 cut(s)	27, 108, 327, 330, 519
GsaI	CCCAGC	3 cut(s)	26, 525, 679
HaeIII	GGCC	2 cut(s)	129, 496
Hin1II	CATG	4 cut(s)	47, 92, 485, 491
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	364, 671
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	5 cut(s)	13, 97, 160, 374, 461
Hpy188I	TCNGA	3 cut(s)	321, 408, 661
Hpy188III	TCNNGA	3 cut(s)	44, 215, 720
Hpy8I	GTNNAC	5 cut(s)	13, 97, 160, 374, 461
HpyAV	CCTTC	2 cut(s)	322, 466
HpyCH4III	ACNGT	4 cut(s)	17, 145, 151, 164
HpyCH4IV	ACGT	2 cut(s)	72, 501
HpyCH4V	TGCA	5 cut(s)	88, 248, 329, 461, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 434
HpyF3I	CTNAG	4 cut(s)	122, 213, 318, 660
HpySE526I	ACGT	2 cut(s)	72, 501
Hsp92II	CATG	4 cut(s)	47, 92, 485, 491
Kzo9I	GATC	1 cut(s)	408
Lsp1109I	GCAGC	5 cut(s)	13, 119, 313, 341, 530
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	2 cut(s)	72, 501
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	2 cut(s)	373, 623
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	4 cut(s)	66, 206, 237, 505
MlyI	GAGTC	2 cut(s)	373, 665
MmeI	TCCRAC	2 cut(s)	115, 554
MnlI	CCTC	6 cut(s)	40, 119, 193, 222, 267, 390
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	4 cut(s)	69, 83, 225, 281
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	5 cut(s)	26, 332, 521, 562, 679
MwoI	GCNNNNNNNGC	2 cut(s)	32, 434
NdeI	CATATG	2 cut(s)	466, 697
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	4 cut(s)	47, 92, 485, 491
NmeAIII	GCCGAG	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	90
PagI	TCATGA	1 cut(s)	43
PkrI	GCNGC	5 cut(s)	28, 109, 328, 331, 520
PleI	GAGTC	2 cut(s)	372, 665
PpsI	GAGTC	2 cut(s)	372, 665
PspFI	CCCAGC	3 cut(s)	22, 521, 675
PspPI	GGNCC	1 cut(s)	539
PsrI	GAACNNNNNNTAC	2 cut(s)	130, 162
PstI	CTGCAG	1 cut(s)	331
PvuII	CAGCTG	4 cut(s)	26, 332, 521, 679
RsaI	GTAC	3 cut(s)	114, 375, 486
RsaNI	GTAC	3 cut(s)	113, 374, 485
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	69, 83, 225, 281
SatI	GCNGC	5 cut(s)	27, 108, 327, 330, 519
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	2 cut(s)	373, 665
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	4 cut(s)	66, 206, 237, 505
SsiI	CCGC	1 cut(s)	562
SspMI	CTAG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	4 cut(s)	17, 145, 151, 164
TaiI	ACGT	2 cut(s)	75, 504
TaqII	GACCGA	1 cut(s)	645
TasI	AATT	4 cut(s)	66, 206, 237, 505
TatI	WGTACW	3 cut(s)	112, 373, 484
Tru1I	TTAA	4 cut(s)	69, 83, 225, 281
Tru9I	TTAA	4 cut(s)	69, 83, 225, 281
TscAI	CASTG	3 cut(s)	106, 169, 419
TseI	GCWGC	5 cut(s)	26, 107, 326, 329, 518
TspDTI	ATGAA	5 cut(s)	32, 211, 369, 374, 504
TspRI	CASTG	3 cut(s)	106, 169, 419
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.