Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003805.1

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

74423 .. 76122

Gene Structure 1700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003805.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgccaagacatgagacaagcagattcacagacctcaatggcgaggttatacaccattttgtatctgtatctagttttagcgagtatacagtggtggacatagcccatctcacaaagattgactctgcaatacctttaaccaaggctgctggccttctaggttgtggagtatcaacaggggttggtgctgcttggagaacagcaaatgtggagccgggatcaactgtggctatatttgggcttggttcaattggattggctgtggcagaaggtgcaagactatgtggagctactagaattatcggggtggatgttaaccaagacaaatttgaaattggaaaaaagtttggagtcactgacttcatcaaccctgcaaattctgagaataaatctgtgacagaggtgatgattgagatgactgacgggggtgcagattattgctttgaatgtgttggaattgcatcactggtgcaacaagcttatgcttgctgccggaagggttggggaaaaacaattgtattaggtgtggaccagccagggtcacagttgacccttccctcatatgatgtgcttcataagggtaaaaccctcatgggatccttctttggaggactcaaacctaagtcggatatccctgtgctcctgaatcgctacatcaacaaggaactacaactagatgagtttgtaacacatgaggtgacatttgaagacatcaacaaagcttttgatttgctcattgaagggaaatgtctccgttgtgtaatctgtatgaacaatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

260

Amino Acids

28.01

Weight (kDa)

5.53

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	86
AclWI	GGATC	3 cut(s)	226, 591, 604
AcsI	RAATTY	2 cut(s)	326, 376
AgsI	TTSAA	5 cut(s)	249, 332, 446, 707, 740
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	3 cut(s)	290, 479, 722
AluI	AGCT	3 cut(s)	290, 479, 722
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	2 cut(s)	8, 755
AlwI	GGATC	3 cut(s)	226, 591, 604
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	146, 188, 489
ApoI	RAATTY	2 cut(s)	326, 376
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	415, 709
AvaII	GGWCC	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	133, 175, 476
BccI	CCATC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	8, 755
BfaI	CTAG	4 cut(s)	72, 158, 294, 674
BisI	GCNGC	3 cut(s)	147, 189, 490
BlsI	GCNGC	3 cut(s)	148, 190, 491
Bme1390I	CCNGG	2 cut(s)	216, 537
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	2 cut(s)	213, 598
BmrFI	CCNGG	2 cut(s)	216, 537
BmsI	GCATC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	141, 536
Bse1I	ACTGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	141, 536
BseGI	GGATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	133, 175, 476
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	2 cut(s)	215, 493
BsmAI	GTCTC	2 cut(s)	8, 755
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	2 cut(s)	218, 596
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	213, 598
BspPI	GGATC	3 cut(s)	226, 591, 604
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	141, 536
BssMI	GATC	2 cut(s)	218, 596
BssNAI	GTATAC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	3 cut(s)	91, 226, 546
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	151, 487
BstDEI	CTNAG	2 cut(s)	381, 621
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	2 cut(s)	221, 599
BstMAI	GTCTC	2 cut(s)	8, 755
BstMBI	GATC	2 cut(s)	218, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	2 cut(s)	214, 535
BstV1I	GCAGC	3 cut(s)	133, 175, 476
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BstZ17I	GTATAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	3 cut(s)	96, 354, 464
Cac8I	GCNNGC	2 cut(s)	151, 487
Cfr13I	GGNCC	1 cut(s)	529
CviAII	CATG	3 cut(s)	11, 592, 692
DdeI	CTNAG	2 cut(s)	381, 621
DpnI	GATC	2 cut(s)	220, 598
DpnII	GATC	2 cut(s)	218, 596
Eco130I	CCWWGG	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	14, 595, 695
FatI	CATG	3 cut(s)	10, 591, 691
FauNDI	CATATG	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	147, 189, 490
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	147, 189, 490
FspBI	CTAG	4 cut(s)	72, 158, 294, 674
GluI	GCNGC	3 cut(s)	147, 189, 490
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	2 cut(s)	215, 493
Hin1II	CATG	3 cut(s)	14, 595, 695
HincII	GTYRAC	2 cut(s)	316, 549
HindII	GTYRAC	2 cut(s)	316, 549
HindIII	AAGCTT	2 cut(s)	477, 720
HinfI	GANTC	5 cut(s)	24, 122, 351, 612, 646
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	2 cut(s)	215, 493
HphI	GGTGA	2 cut(s)	415, 709
Hpy166II	GTNNAC	5 cut(s)	87, 97, 316, 529, 549
Hpy188I	TCNGA	2 cut(s)	382, 628
Hpy188III	TCNNGA	1 cut(s)	643
Hpy8I	GTNNAC	5 cut(s)	87, 97, 316, 529, 549
HpyAV	CCTTC	6 cut(s)	164, 263, 490, 563, 610, 734
HpyCH4III	ACNGT	3 cut(s)	91, 226, 546
HpyCH4V	TGCA	6 cut(s)	128, 275, 374, 431, 461, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	381, 621
Hsp92II	CATG	3 cut(s)	14, 595, 695
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	218, 596
LmnI	GCTCC	3 cut(s)	211, 287, 645
Lsp1109I	GCAGC	3 cut(s)	133, 175, 476
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	4 cut(s)	72, 158, 294, 674
MaeIII	GTNAC	5 cut(s)	352, 394, 540, 685, 697
MalI	GATC	2 cut(s)	220, 598
MboI	GATC	2 cut(s)	218, 596
MboII	GAAGA	1 cut(s)	719
MfeI	CAATTG	2 cut(s)	249, 513
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	7 cut(s)	249, 297, 326, 333, 376, 456, 513
MlyI	GAGTC	3 cut(s)	116, 360, 606
MmeI	TCCRAC	2 cut(s)	433, 606
MnlI	CCTC	7 cut(s)	37, 44, 394, 568, 599, 602, 688
MseI	TTAA	2 cut(s)	137, 315
MspI	CCGG	2 cut(s)	215, 493
MspR9I	CCNGG	2 cut(s)	216, 537
MunI	CAATTG	2 cut(s)	249, 513
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	2 cut(s)	218, 596
NlaIII	CATG	3 cut(s)	14, 595, 695
NlaIV	GGNNCC	2 cut(s)	213, 598
NmuCI	GTSAC	4 cut(s)	352, 394, 540, 697
PfeI	GAWTC	2 cut(s)	24, 646
PkrI	GCNGC	3 cut(s)	148, 190, 491
PleI	GAGTC	3 cut(s)	116, 359, 606
PpsI	GAGTC	3 cut(s)	116, 359, 606
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	2 cut(s)	213, 598
PspPI	GGNCC	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	137, 315
SatI	GCNGC	3 cut(s)	147, 189, 490
Sau3AI	GATC	2 cut(s)	218, 596
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	3 cut(s)	116, 360, 606
ScrFI	CCNGG	2 cut(s)	216, 537
SduI	GDGCHC	1 cut(s)	642
SfaNI	GCATC	1 cut(s)	470
SinI	GGWCC	1 cut(s)	529
Sse9I	AATT	7 cut(s)	249, 297, 326, 333, 376, 456, 513
SspMI	CTAG	4 cut(s)	72, 158, 294, 674
StyD4I	CCNGG	2 cut(s)	214, 535
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	91, 226, 546
TasI	AATT	7 cut(s)	249, 297, 326, 333, 376, 456, 513
TfiI	GAWTC	2 cut(s)	24, 646
Tru1I	TTAA	2 cut(s)	137, 315
Tru9I	TTAA	2 cut(s)	137, 315
TscAI	CASTG	3 cut(s)	96, 361, 471
TseFI	GTSAC	4 cut(s)	352, 394, 540, 697
TseI	GCWGC	3 cut(s)	146, 188, 489
Tsp45I	GTSAC	4 cut(s)	352, 394, 540, 697
TspDTI	ATGAA	2 cut(s)	352, 563
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	3 cut(s)	96, 361, 471
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	2 cut(s)	326, 376
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	4 cut(s)	72, 158, 294, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.