Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8412721.1

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1252

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8412721.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 670 bp

atggctgagaaagtgtccggtggaagtagagggaagcctattagatgcagagctgcggtgtgtcggaggccaagtgagcctctggtgatcgaagagatcatagtggcaccgccgttgcctcatgaagtacgcattcgaattatttatacttctctgtgccacagtgatctcttgttctggaagataaaggactttgctgctgcaatgttccctagaattctcggtcacgaagctatcggggtcgtggagagtgttggggaggatgtcaatgaggtaagcgaaggagatactgtcatcccaacattcatggcagactgtggagaatgtggagattgcaaatcaccgaagagcaatctatgttcaaaactacccttcaagttctcacattttatgccaagatatgagacaagcagattcacagacctcaacggcgaggctatataccatttcctatctgtgtctagttttagtgagtatacagtggtagacatagctcatgtcacaaagattgattctggaatacctcttaccagggctgcaggccttctggggtgcggagtatcaacaggggttggtgctgcatggagaacggcaaatgtagagccaggatcaactgtggctatattcgggctcggttcaattggattagctgtatgcattcgcaaccttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

223

Amino Acids

24.03

Weight (kDa)

6.3

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	2 cut(s)	476, 486
AciI	CCGC	3 cut(s)	56, 110, 555
AclWI	GGATC	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	363, 376, 639
AjnI	CCWGG	2 cut(s)	530, 604
AluBI	AGCT	4 cut(s)	53, 233, 494, 650
AluI	AGCT	4 cut(s)	53, 233, 494, 650
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	616
AoxI	GGCC	2 cut(s)	68, 541
ApeKI	GCWGC	5 cut(s)	53, 197, 200, 536, 578
ApoI	RAATTY	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	97, 333
AsuII	TTCGAA	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	633
BbvI	GCAGC	5 cut(s)	40, 184, 187, 523, 565
BceAI	ACGGC	3 cut(s)	97, 445, 606
BciT130I	CCWGG	2 cut(s)	532, 606
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	213, 462
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	5 cut(s)	54, 198, 201, 537, 579
BlsI	GCNGC	5 cut(s)	55, 199, 202, 538, 580
Bme1390I	CCNGG	2 cut(s)	532, 606
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	532, 606
BmsI	GCATC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	531
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 276, 306
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	532, 606
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	268, 294
BseMI	GCAATG	1 cut(s)	210
BseXI	GCAGC	5 cut(s)	40, 184, 187, 523, 565
BshFI	GGCC	2 cut(s)	70, 543
BshNI	GGYRCC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	398
BsmI	GAATGC	2 cut(s)	132, 657
BsnI	GGCC	2 cut(s)	70, 543
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	4 cut(s)	87, 96, 166, 608
BspACI	CCGC	3 cut(s)	56, 110, 555
BspANI	GGCC	2 cut(s)	70, 543
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	4 cut(s)	87, 96, 166, 608
BssNAI	GTATAC	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	532, 606
Bst4CI	ACNGT	5 cut(s)	164, 292, 317, 481, 616
Bst6I	CTCTTC	2 cut(s)	87, 341
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	268, 294
BstKTI	GATC	4 cut(s)	90, 99, 169, 611
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	87, 96, 166, 608
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	532, 606
BstSCI	CCNGG	2 cut(s)	530, 604
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	5 cut(s)	40, 184, 187, 523, 565
BstZ17I	GTATAC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	70, 543
BtsCI	GGATG	2 cut(s)	268, 294
BtsIMutI	CAGTG	2 cut(s)	169, 486
Cac8I	GCNNGC	1 cut(s)	541
CciI	TCATGA	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	4 cut(s)	122, 307, 497, 582
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	4 cut(s)	89, 98, 168, 610
DpnII	GATC	4 cut(s)	87, 96, 166, 608
Eam1104I	CTCTTC	2 cut(s)	87, 341
EarI	CTCTTC	2 cut(s)	87, 341
Eco147I	AGGCCT	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	530, 604
EcoT22I	ATGCAT	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	633
FaeI	CATG	4 cut(s)	125, 310, 500, 585
FatI	CATG	4 cut(s)	121, 306, 496, 581
FblI	GTMKAC	2 cut(s)	476, 486
Fnu4HI	GCNGC	5 cut(s)	54, 198, 201, 537, 579
FokI	GGATG	2 cut(s)	275, 281
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	5 cut(s)	54, 198, 201, 537, 579
FspBI	CTAG	2 cut(s)	213, 462
GluI	GCNGC	5 cut(s)	54, 198, 201, 537, 579
HaeIII	GGCC	2 cut(s)	70, 543
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	4 cut(s)	125, 310, 500, 585
HinfI	GANTC	2 cut(s)	414, 512
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	97, 333
Hpy166II	GTNNAC	2 cut(s)	477, 487
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	4 cut(s)	122, 178, 227, 516
Hpy8I	GTNNAC	2 cut(s)	477, 487
HpyAV	CCTTC	3 cut(s)	275, 382, 554
HpyCH4III	ACNGT	5 cut(s)	164, 292, 317, 481, 616
HpyCH4V	TGCA	6 cut(s)	48, 203, 336, 539, 581, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	125, 310, 500, 585
Kzo9I	GATC	4 cut(s)	87, 96, 166, 608
LguI	GCTCTTC	1 cut(s)	341
Lsp1109I	GCAGC	5 cut(s)	40, 184, 187, 523, 565
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	2 cut(s)	213, 462
MaeIII	GTNAC	2 cut(s)	224, 499
MalI	GATC	4 cut(s)	89, 98, 168, 610
MboI	GATC	4 cut(s)	87, 96, 166, 608
MboII	GAAGA	3 cut(s)	104, 193, 358
MfeI	CAATTG	1 cut(s)	639
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	3 cut(s)	138, 216, 639
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	9 cut(s)	23, 60, 90, 129, 253, 265, 427, 434, 534
Mph1103I	ATGCAT	1 cut(s)	659
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	532, 606
MunI	CAATTG	1 cut(s)	639
Mva1269I	GAATGC	2 cut(s)	132, 657
MvaI	CCWGG	2 cut(s)	532, 606
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	4 cut(s)	87, 96, 166, 608
NlaIII	CATG	4 cut(s)	125, 310, 500, 585
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	224, 499
NsiI	ATGCAT	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	136
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	341
PctI	GAATGC	2 cut(s)	132, 657
PfeI	GAWTC	2 cut(s)	414, 512
PkrI	GCNGC	5 cut(s)	55, 199, 202, 538, 580
Psp6I	CCWGG	2 cut(s)	530, 604
PspGI	CCWGG	2 cut(s)	530, 604
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	341
SatI	GCNGC	5 cut(s)	54, 198, 201, 537, 579
Sau3AI	GATC	4 cut(s)	87, 96, 166, 608
ScrFI	CCNGG	2 cut(s)	532, 606
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	8 cut(s)	55, 235, 276, 426, 496, 526, 652, 669
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	136
Sse9I	AATT	3 cut(s)	138, 216, 639
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	3 cut(s)	56, 110, 555
SspMI	CTAG	2 cut(s)	213, 462
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	530, 604
TaaI	ACNGT	5 cut(s)	164, 292, 317, 481, 616
TaqI	TCGA	2 cut(s)	90, 136
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	138, 216, 639
TfiI	GAWTC	2 cut(s)	414, 512
TscAI	CASTG	2 cut(s)	169, 486
TseFI	GTSAC	2 cut(s)	224, 499
TseI	GCWGC	5 cut(s)	53, 197, 200, 536, 578
Tsp45I	GTSAC	2 cut(s)	224, 499
TspDTI	ATGAA	2 cut(s)	138, 295
TspRI	CASTG	2 cut(s)	169, 486
XapI	RAATTY	1 cut(s)	216
XmiI	GTMKAC	2 cut(s)	476, 486
XspI	CTAG	2 cut(s)	213, 462
Zsp2I	ATGCAT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.