Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003805.1

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

78085 .. 81958

Gene Structure 3874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003805.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

atggcggtccgaattgaagagcagctcgatagtggaaaagcaggaaaacccggtattacagccaccgacacaaatagtactatggccgccatggatgagaagttgtcaagtggaaacagagggaagactattcgatgcagagctgcggtctctcgcaagccaggtgagccactagtgatggaagagatcatggtggcgccgccaatgccccatgaagttcgcgttcggattgtctatacttctctgtgtcacagtgatatcactttttggaaaatgaaggactttcctggagtcttccctagaattctcggtcatgaagctattggggttgtggagagtgttggggaggatgtgactgaggtagccgaaggagatactgtcatccccacattgatttcggattgtggagaatgtgtagattgcacatcaacaaagagcaatctttgttcaaaacttcccttcaagatctcaccttttatgccaagacatgagacaagcagattcacagacctcaatggcgaggttatacaccattttgtatctgtatctagttttagcgagtatacagtggtggacatagcccatctcacaaagattgactctgcaatacctttaaccaaggctgctggccttctaggttgtggagtatcaacaggggttggtgctgcttggagaacagcaaatgtggagccgggatcaactgtggctatatttgggcttggttcaattggattggctgtggcagaaggtgcaagactatgtggagctactagaattatcggggtggatgttaaccaagacaaatttgaaattggaaaaaagtttggagtcactgacttcatcaaccctgcaaattgtgagaataaatctgtgacagaggtgatgattgagatgactgacgggggtgctgattattgctttgaatgtgttggaattgcatcactggtgcaacaagcttatgcttgctgccggaagggttggggaaaaacaattgtattaggtgtggaccagccagggtcacagttgacccttccctcatacgatgtgcttcataagggtaaaaccctcatgggatccttctttggaggactcaaacctaagtcggatatccctgtgctcctgaatcgctacatcaacaaggaactacaactagatgagtttgtaacacatgaggtgacatttgaagacatcaacaaagcttttgatttgctcattgaagggaaatgtctccgttgtgtaatctgtatgaacaatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

419

Amino Acids

45.22

Weight (kDa)

5.48

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	563
AccII	CGCG	1 cut(s)	222
AciI	CCGC	4 cut(s)	5, 87, 146, 200
AclWI	GGATC	3 cut(s)	703, 1068, 1081
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	303, 803
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	8 cut(s)	17, 450, 463, 726, 809, 923, 1184, 1217
AhlI	ACTAGT	1 cut(s)	172
AjnI	CCWGG	3 cut(s)	160, 286, 1012
AluBI	AGCT	6 cut(s)	25, 143, 320, 767, 956, 1199
AluI	AGCT	6 cut(s)	25, 143, 320, 767, 956, 1199
Alw21I	GWGCWC	1 cut(s)	1119
Alw26I	GTCTC	3 cut(s)	154, 485, 1232
AlwI	GGATC	3 cut(s)	703, 1068, 1081
AoxI	GGCC	2 cut(s)	84, 628
ApeKI	GCWGC	5 cut(s)	22, 143, 623, 665, 966
ApoI	RAATTY	2 cut(s)	303, 803
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	7, 1006
AsuC2I	CCSGG	2 cut(s)	51, 693
AsuHPI	GGTGA	4 cut(s)	176, 462, 892, 1186
AvaII	GGWCC	2 cut(s)	7, 1006
BamHI	GGATCC	1 cut(s)	1073
BanI	GGYRCC	1 cut(s)	196
BbsI	GAAGAC	3 cut(s)	131, 286, 1191
Bbv12I	GWGCWC	1 cut(s)	1119
BbvI	GCAGC	5 cut(s)	34, 130, 610, 652, 953
BccI	CCATC	2 cut(s)	172, 591
BciT130I	CCWGG	3 cut(s)	162, 288, 1014
BcnI	CCSGG	2 cut(s)	51, 693
BcoDI	GTCTC	3 cut(s)	154, 485, 1232
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	6 cut(s)	173, 300, 549, 635, 771, 1151
BfoI	RGCGCY	1 cut(s)	200
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	7 cut(s)	23, 87, 144, 200, 624, 666, 967
BlsI	GCNGC	7 cut(s)	24, 88, 145, 201, 625, 667, 968
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	5 cut(s)	51, 162, 288, 693, 1014
Bme18I	GGWCC	2 cut(s)	7, 1006
BmgT120I	GGNCC	2 cut(s)	7, 1006
BmiI	GGNNCC	3 cut(s)	198, 690, 1075
BmrFI	CCNGG	5 cut(s)	51, 162, 288, 693, 1014
BmsI	GCATC	2 cut(s)	125, 947
BpiI	GAAGAC	3 cut(s)	131, 286, 1191
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	2 cut(s)	51, 693
BsaHI	GRCGYC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	90, 618, 1013
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 399, 429
Bse1I	ACTGG	1 cut(s)	948
BseBI	CCWGG	3 cut(s)	162, 288, 1014
BseDI	CCNNGG	3 cut(s)	90, 618, 1013
BseGI	GGATG	4 cut(s)	100, 355, 381, 793
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	948
BseXI	GCAGC	5 cut(s)	34, 130, 610, 652, 953
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	86, 630
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	1119
BsiSI	CCGG	3 cut(s)	51, 692, 970
BsmAI	GTCTC	3 cut(s)	154, 485, 1232
BsnI	GGCC	2 cut(s)	86, 630
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	1119
Bsp143I	GATC	4 cut(s)	186, 465, 695, 1073
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	4 cut(s)	5, 87, 146, 200
BspANI	GGCC	2 cut(s)	86, 630
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	198, 690, 1075
BspPI	GGATC	3 cut(s)	703, 1068, 1081
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	948
BssECI	CCNNGG	3 cut(s)	90, 618, 1013
BssMI	GATC	4 cut(s)	186, 465, 695, 1073
BssNAI	GTATAC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	2 cut(s)	90, 618
Bst1107I	GTATAC	1 cut(s)	564
Bst2UI	CCWGG	3 cut(s)	162, 288, 1014
Bst4CI	ACNGT	5 cut(s)	254, 379, 568, 703, 1023
Bst6I	CTCTTC	2 cut(s)	12, 177
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstC8I	GCNNGC	3 cut(s)	158, 628, 964
BstDEI	CTNAG	2 cut(s)	357, 1098
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	4 cut(s)	100, 355, 381, 793
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	189, 468, 698, 1076
BstMAI	GTCTC	3 cut(s)	154, 485, 1232
BstMBI	GATC	4 cut(s)	186, 465, 695, 1073
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 205, 749
BstNI	CCWGG	3 cut(s)	162, 288, 1014
BstSCI	CCNGG	5 cut(s)	49, 160, 286, 691, 1012
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	5 cut(s)	34, 130, 610, 652, 953
BstV2I	GAAGAC	3 cut(s)	131, 286, 1191
BstX2I	RGATCY	2 cut(s)	465, 1073
BstYI	RGATCY	2 cut(s)	465, 1073
BstZ17I	GTATAC	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	86, 630
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	4 cut(s)	100, 355, 381, 793
BtsIMutI	CAGTG	4 cut(s)	259, 573, 831, 941
Cac8I	GCNNGC	3 cut(s)	158, 628, 964
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	7, 1006
CpoI	CGGWCCG	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	78
CspI	CGGWCCG	1 cut(s)	7
CviAII	CATG	7 cut(s)	91, 190, 212, 314, 488, 1069, 1169
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	357, 1098
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	4 cut(s)	188, 467, 697, 1075
DpnII	GATC	4 cut(s)	186, 465, 695, 1073
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	12, 177
EarI	CTCTTC	2 cut(s)	12, 177
Eco130I	CCWWGG	2 cut(s)	90, 618
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	2 cut(s)	259, 1108
Eco47I	GGWCC	2 cut(s)	7, 1006
EcoRI	GAATTC	1 cut(s)	303
EcoRII	CCWGG	3 cut(s)	160, 286, 1012
EcoRV	GATATC	2 cut(s)	259, 1108
EcoT14I	CCWWGG	2 cut(s)	90, 618
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	90, 618
FaeI	CATG	7 cut(s)	94, 193, 215, 317, 491, 1072, 1172
FatI	CATG	7 cut(s)	90, 189, 211, 313, 487, 1068, 1168
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	7 cut(s)	23, 87, 144, 200, 624, 666, 967
FokI	GGATG	4 cut(s)	107, 362, 368, 800
Fsp4HI	GCNGC	7 cut(s)	23, 87, 144, 200, 624, 666, 967
FspBI	CTAG	6 cut(s)	173, 300, 549, 635, 771, 1151
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	7 cut(s)	23, 87, 144, 200, 624, 666, 967
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	86, 630
HapII	CCGG	3 cut(s)	51, 692, 970
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	7 cut(s)	94, 193, 215, 317, 491, 1072, 1172
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	2 cut(s)	793, 1026
HindII	GTYRAC	2 cut(s)	793, 1026
HindIII	AAGCTT	2 cut(s)	954, 1197
HinfI	GANTC	6 cut(s)	291, 501, 599, 828, 1089, 1123
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	3 cut(s)	51, 692, 970
HphI	GGTGA	4 cut(s)	176, 462, 892, 1186
Hpy166II	GTNNAC	5 cut(s)	564, 574, 793, 1006, 1026
Hpy188I	TCNGA	4 cut(s)	11, 228, 400, 1105
Hpy188III	TCNNGA	3 cut(s)	314, 463, 1120
Hpy8I	GTNNAC	5 cut(s)	564, 574, 793, 1006, 1026
HpyAV	CCTTC	9 cut(s)	271, 362, 469, 641, 740, 967, 1040, 1087, 1211
HpyCH4III	ACNGT	5 cut(s)	254, 379, 568, 703, 1023
HpyCH4V	TGCA	7 cut(s)	138, 423, 605, 752, 851, 938, 949
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 205, 749
HpyF3I	CTNAG	2 cut(s)	357, 1098
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	7 cut(s)	94, 193, 215, 317, 491, 1072, 1172
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	793
Kzo9I	GATC	4 cut(s)	186, 465, 695, 1073
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	3 cut(s)	688, 764, 1122
Lsp1109I	GCAGC	5 cut(s)	34, 130, 610, 652, 953
LweI	GCATC	2 cut(s)	125, 947
MaeI	CTAG	6 cut(s)	173, 300, 549, 635, 771, 1151
MaeIII	GTNAC	7 cut(s)	248, 352, 829, 871, 1017, 1162, 1174
MalI	GATC	4 cut(s)	188, 467, 697, 1075
MboI	GATC	4 cut(s)	186, 465, 695, 1073
MboII	GAAGA	5 cut(s)	29, 136, 194, 286, 1196
MfeI	CAATTG	2 cut(s)	726, 990
MflI	RGATCY	2 cut(s)	465, 1073
MhlI	GDGCHC	1 cut(s)	1119
MluCI	AATT	9 cut(s)	12, 303, 726, 774, 803, 810, 853, 933, 990
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	4 cut(s)	300, 593, 837, 1083
MmeI	TCCRAC	2 cut(s)	910, 1083
MseI	TTAA	2 cut(s)	614, 792
MspI	CCGG	3 cut(s)	51, 692, 970
MspR9I	CCNGG	5 cut(s)	51, 162, 288, 693, 1014
MunI	CAATTG	2 cut(s)	726, 990
MvaI	CCWGG	3 cut(s)	162, 288, 1014
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	166, 205, 749
NarI	GGCGCC	1 cut(s)	197
NciI	CCSGG	2 cut(s)	51, 693
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	4 cut(s)	186, 465, 695, 1073
NlaIII	CATG	7 cut(s)	94, 193, 215, 317, 491, 1072, 1172
NlaIV	GGNNCC	3 cut(s)	198, 690, 1075
NmuCI	GTSAC	6 cut(s)	248, 352, 829, 871, 1017, 1174
PagI	TCATGA	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	501, 1123
PfoI	TCCNGGA	1 cut(s)	286
PkrI	GCNGC	7 cut(s)	24, 88, 145, 201, 625, 667, 968
PleI	GAGTC	4 cut(s)	299, 593, 836, 1083
PluTI	GGCGCC	1 cut(s)	200
PpsI	GAGTC	4 cut(s)	299, 593, 836, 1083
Psp6I	CCWGG	3 cut(s)	160, 286, 1012
PspGI	CCWGG	3 cut(s)	160, 286, 1012
PspN4I	GGNNCC	3 cut(s)	198, 690, 1075
PspPI	GGNCC	2 cut(s)	7, 1006
PsuI	RGATCY	2 cut(s)	465, 1073
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
Rsr2I	CGGWCCG	1 cut(s)	7
RsrII	CGGWCCG	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	614, 792
SatI	GCNGC	7 cut(s)	23, 87, 144, 200, 624, 666, 967
Sau3AI	GATC	4 cut(s)	186, 465, 695, 1073
Sau96I	GGNCC	2 cut(s)	7, 1006
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	4 cut(s)	300, 593, 837, 1083
ScrFI	CCNGG	5 cut(s)	51, 162, 288, 693, 1014
SduI	GDGCHC	1 cut(s)	1119
SfaNI	GCATC	2 cut(s)	125, 947
SfoI	GGCGCC	1 cut(s)	198
SinI	GGWCC	2 cut(s)	7, 1006
SpeI	ACTAGT	1 cut(s)	172
Sse9I	AATT	9 cut(s)	12, 303, 726, 774, 803, 810, 853, 933, 990
SsiI	CCGC	4 cut(s)	5, 87, 146, 200
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	6 cut(s)	173, 300, 549, 635, 771, 1151
StyD4I	CCNGG	5 cut(s)	49, 160, 286, 691, 1012
StyI	CCWWGG	2 cut(s)	90, 618
TaaI	ACNGT	5 cut(s)	254, 379, 568, 703, 1023
TaqI	TCGA	2 cut(s)	27, 133
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	9 cut(s)	12, 303, 726, 774, 803, 810, 853, 933, 990
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	2 cut(s)	89, 202
TfiI	GAWTC	2 cut(s)	501, 1123
Tru1I	TTAA	2 cut(s)	614, 792
Tru9I	TTAA	2 cut(s)	614, 792
TscAI	CASTG	4 cut(s)	259, 573, 838, 948
TseFI	GTSAC	6 cut(s)	248, 352, 829, 871, 1017, 1174
TseI	GCWGC	5 cut(s)	22, 143, 623, 665, 966
Tsp45I	GTSAC	6 cut(s)	248, 352, 829, 871, 1017, 1174
TspDTI	ATGAA	5 cut(s)	228, 290, 330, 829, 1040
TspGWI	ACGGA	1 cut(s)	1220
TspRI	CASTG	4 cut(s)	259, 573, 838, 948
VpaK11BI	GGWCC	2 cut(s)	7, 1006
XapI	RAATTY	2 cut(s)	303, 803
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	6 cut(s)	173, 300, 549, 635, 771, 1151
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.