Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Forward (+)

63484485 .. 63487907

Gene Structure 3423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27310

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCTGAGAAAGTGTCCGGTGGAAGTAAAGGGAAGCCTATTAGATGCAGAGGTGCGGTGTGTCGGAGGCCAAGTGAGCCTCTGGTGATCGAAGAGATCATAGTGGCACCGCCGATGCCTCATGAAGTACGCATTCGAATTATTTATACTTCTCTGTGCCACAGTGATCTCTTGTTCTGGAAGATAAAGGACTTTGCTGCTGCAATGTTCCCTAGAATTCTCGGTCACGAAGCTATCGGGGTCGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTAAGCGAAGGAGATACTGTCATCCCAACATTCATGGCAGACTGTGGAGAATGTGGAGATTGCAAATCACCGAAGAGCAATCTATGTTCAAAATTACCCTTCAAGTCCTCACATTTTATGCCAAGATATGAGACAAGCAGGTTCACAGACCTCAACGGCGAGGCTATATACCATTTCCTATATGTGTCTAGTTTTAGTGAGTATACAGTGGTAGACATAGCTCATGTCACAAAGATTGATTCTGGAATACCTCTTACCAAGGCTGCAGGCCTTCTGGGGTGCGGAGTATCAACAGGGGTTGGTGCTGCATGGAGAACGGCAAATGTAGAGCCAGGATCAACTGTGGCTATATTCGGGCTCGGTTCAATTGGATTAGCTGTTGCAGAGGGAGCAAGACTTTGTGGAGCTACAAGAATTATCGGCGTGGATGTGAACGAAGACAAATTTGAAGTTGGGAAAAAGTTTGGACTCACTGACTTCGTCAAAGCTGCAAATTCTGAGAATAAATCTGCGAGCGAGGTGATAATTGAGATGACTGACGGGGGTGCAGATTATTGCTTTGAATGTGTGGGAATGGCATCAGTGGTGCAAGAAGCTTATGCTTGTTGCCGGAAGGGTTGGGGAAAAACAATCGTGTTAGGAGTGGACAAGCCAGGGTCACAGGTGACCATTTCTTCACGTGATATCCTTACTACTGGCAAATCCCTCATTGGAGTCTTATTTGGAGGACTCAAACCCAAATCGGATATTCCTACTCTCCTCAATCGCTACATCAACAAGGAACTACAACTGGATGAGTTTGTAACACATGAAGTGCCGTTTGAAGACATTAACAAAGCTTTTGATTTACTCATTGAAGGGAAATGTTTGCGATGTGTAATCTGTATGAATGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

390

Amino Acids

42.08

Weight (kDa)

5.53

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	40 - 171	2.1e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	214 - 346	1.7e-25	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	2 cut(s)	476, 486
AciI	CCGC	3 cut(s)	56, 110, 555
AclWI	GGATC	1 cut(s)	616
AcsI	RAATTY	3 cut(s)	216, 716, 766
AcvI	CACGTG	1 cut(s)	953
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	7 cut(s)	363, 376, 639, 722, 836, 1097, 1130
AjnI	CCWGG	2 cut(s)	604, 925
AluBI	AGCT	7 cut(s)	233, 494, 650, 680, 761, 869, 1112
AluI	AGCT	7 cut(s)	233, 494, 650, 680, 761, 869, 1112
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	616
AoxI	GGCC	2 cut(s)	68, 541
ApeKI	GCWGC	5 cut(s)	197, 200, 536, 578, 761
ApoI	RAATTY	3 cut(s)	216, 716, 766
AsuHPI	GGTGA	4 cut(s)	97, 333, 805, 949
AsuII	TTCGAA	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	633
BbrPI	CACGTG	1 cut(s)	953
BbsI	GAAGAC	2 cut(s)	717, 1104
BbvI	GCAGC	5 cut(s)	184, 187, 523, 565, 748
BceAI	ACGGC	3 cut(s)	445, 606, 1075
BciT130I	CCWGG	2 cut(s)	606, 927
BclI	TGATCA	1 cut(s)	1165
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	213, 462
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	402
BisI	GCNGC	5 cut(s)	198, 201, 537, 579, 762
BlsI	GCNGC	5 cut(s)	199, 202, 538, 580, 763
Bme1390I	CCNGG	2 cut(s)	606, 927
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	606, 927
BmsI	GCATC	3 cut(s)	35, 105, 860
BpiI	GAAGAC	2 cut(s)	717, 1104
Bpu14I	TTCGAA	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	953
BsaJI	CCNNGG	2 cut(s)	531, 926
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 276, 306
Bse1I	ACTGG	2 cut(s)	973, 1068
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	606, 927
BseDI	CCNNGG	2 cut(s)	531, 926
BseGI	GGATG	4 cut(s)	268, 294, 706, 1072
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	2 cut(s)	973, 1068
BseRI	GAGGAG	1 cut(s)	1022
BseXI	GCAGC	5 cut(s)	184, 187, 523, 565, 748
BsgI	GTGCAG	1 cut(s)	840
BshFI	GGCC	2 cut(s)	70, 543
BshNI	GGYRCC	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	18, 883
BsmAI	GTCTC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	70, 543
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	5 cut(s)	87, 96, 166, 608, 1165
BspACI	CCGC	3 cut(s)	56, 110, 555
BspANI	GGCC	2 cut(s)	70, 543
BspCNI	CTCAG	1 cut(s)	763
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	616
BspQI	GCTCTTC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	973, 1068
BssECI	CCNNGG	2 cut(s)	531, 926
BssMI	GATC	5 cut(s)	87, 96, 166, 608, 1165
BssNAI	GTATAC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	531
Bst1107I	GTATAC	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	606, 927
Bst4CI	ACNGT	5 cut(s)	164, 292, 317, 481, 616
Bst6I	CTCTTC	2 cut(s)	87, 341
BstBAI	YACGTR	1 cut(s)	953
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	541, 787
BstDEI	CTNAG	2 cut(s)	6, 771
BstEII	GGTNACC	1 cut(s)	937
BstF5I	GGATG	4 cut(s)	268, 294, 706, 1072
BstKTI	GATC	5 cut(s)	90, 99, 169, 611, 1168
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	5 cut(s)	87, 96, 166, 608, 1165
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 662
BstNI	CCWGG	2 cut(s)	606, 927
BstPI	GGTNACC	1 cut(s)	937
BstSCI	CCNGG	2 cut(s)	604, 925
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	5 cut(s)	184, 187, 523, 565, 748
BstV2I	GAAGAC	2 cut(s)	717, 1104
BstZ17I	GTATAC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	70, 543
BtgZI	GCGATG	1 cut(s)	1159
BtsCI	GGATG	4 cut(s)	268, 294, 706, 1072
BtsIMutI	CAGTG	4 cut(s)	169, 486, 744, 861
BveI	ACCTGC	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	541, 787
CciI	TCATGA	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	5 cut(s)	122, 307, 497, 582, 1082
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	6, 771
DpnI	GATC	5 cut(s)	89, 98, 168, 610, 1167
DpnII	GATC	5 cut(s)	87, 96, 166, 608, 1165
Eam1104I	CTCTTC	2 cut(s)	87, 341
EarI	CTCTTC	2 cut(s)	87, 341
Eco130I	CCWWGG	1 cut(s)	531
Eco147I	AGGCCT	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	633
Eco32I	GATATC	1 cut(s)	958
Eco72I	CACGTG	1 cut(s)	953
Eco91I	GGTNACC	1 cut(s)	937
EcoO65I	GGTNACC	1 cut(s)	937
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	604, 925
EcoRV	GATATC	1 cut(s)	958
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	5 cut(s)	125, 310, 500, 585, 1085
FatI	CATG	5 cut(s)	121, 306, 496, 581, 1081
FbaI	TGATCA	1 cut(s)	1165
FblI	GTMKAC	2 cut(s)	476, 486
Fnu4HI	GCNGC	5 cut(s)	198, 201, 537, 579, 762
FokI	GGATG	4 cut(s)	275, 281, 713, 1079
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	5 cut(s)	198, 201, 537, 579, 762
FspBI	CTAG	2 cut(s)	213, 462
GluI	GCNGC	5 cut(s)	198, 201, 537, 579, 762
HaeIII	GGCC	2 cut(s)	70, 543
HapII	CCGG	2 cut(s)	18, 883
Hin1II	CATG	5 cut(s)	125, 310, 500, 585, 1085
HindIII	AAGCTT	2 cut(s)	867, 1110
HinfI	GANTC	4 cut(s)	512, 741, 987, 1002
HpaII	CCGG	2 cut(s)	18, 883
HphI	GGTGA	4 cut(s)	97, 333, 805, 949
Hpy166II	GTNNAC	5 cut(s)	417, 477, 487, 706, 919
Hpy188I	TCNGA	3 cut(s)	66, 772, 1018
Hpy188III	TCNNGA	4 cut(s)	122, 178, 227, 516
Hpy8I	GTNNAC	5 cut(s)	417, 477, 487, 706, 919
HpyAV	CCTTC	5 cut(s)	275, 382, 554, 880, 1124
HpyCH4III	ACNGT	5 cut(s)	164, 292, 317, 481, 616
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	9 cut(s)	48, 203, 336, 539, 581, 656, 764, 821, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 662
HpyF3I	CTNAG	2 cut(s)	6, 771
HpySE526I	ACGT	1 cut(s)	952
Hsp92II	CATG	5 cut(s)	125, 310, 500, 585, 1085
Ksp22I	TGATCA	1 cut(s)	1165
Kzo9I	GATC	5 cut(s)	87, 96, 166, 608, 1165
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	662, 677
Lsp1109I	GCAGC	5 cut(s)	184, 187, 523, 565, 748
LweI	GCATC	3 cut(s)	35, 105, 860
MaeI	CTAG	2 cut(s)	213, 462
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	5 cut(s)	224, 499, 930, 937, 1075
MalI	GATC	5 cut(s)	89, 98, 168, 610, 1167
MboI	GATC	5 cut(s)	87, 96, 166, 608, 1165
MboII	GAAGA	6 cut(s)	104, 193, 358, 722, 939, 1109
MfeI	CAATTG	1 cut(s)	639
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	8 cut(s)	138, 216, 365, 639, 687, 716, 766, 798
MlyI	GAGTC	3 cut(s)	735, 996, 996
MmeI	TCCRAC	1 cut(s)	44
MseI	TTAA	1 cut(s)	1104
MspI	CCGG	2 cut(s)	18, 883
MspR9I	CCNGG	2 cut(s)	606, 927
MunI	CAATTG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	2 cut(s)	606, 927
MwoI	GCNNNNNNNGC	2 cut(s)	76, 662
NdeII	GATC	5 cut(s)	87, 96, 166, 608, 1165
NlaIII	CATG	5 cut(s)	125, 310, 500, 585, 1085
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	4 cut(s)	224, 499, 930, 937
NspV	TTCGAA	1 cut(s)	136
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	341
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	512
PflFI	GACNNNGTC	1 cut(s)	752
PkrI	GCNGC	5 cut(s)	199, 202, 538, 580, 763
PleI	GAGTC	3 cut(s)	735, 995, 996
PmaCI	CACGTG	1 cut(s)	953
PmlI	CACGTG	1 cut(s)	953
PpsI	GAGTC	3 cut(s)	735, 995, 996
Ppu21I	YACGTR	1 cut(s)	953
Psp6I	CCWGG	2 cut(s)	604, 925
PspCI	CACGTG	1 cut(s)	953
PspEI	GGTNACC	1 cut(s)	937
PspGI	CCWGG	2 cut(s)	604, 925
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	541
PsyI	GACNNNGTC	1 cut(s)	752
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	1104
SatI	GCNGC	5 cut(s)	198, 201, 537, 579, 762
Sau3AI	GATC	5 cut(s)	87, 96, 166, 608, 1165
SchI	GAGTC	3 cut(s)	735, 996, 996
ScrFI	CCNGG	2 cut(s)	606, 927
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	3 cut(s)	35, 105, 860
SfcI	CTRYAG	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	136
Sse9I	AATT	8 cut(s)	138, 216, 365, 639, 687, 716, 766, 798
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	3 cut(s)	56, 110, 555
SspMI	CTAG	2 cut(s)	213, 462
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	604, 925
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	5 cut(s)	164, 292, 317, 481, 616
TaiI	ACGT	1 cut(s)	955
TaqI	TCGA	2 cut(s)	90, 136
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	8 cut(s)	138, 216, 365, 639, 687, 716, 766, 798
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	1 cut(s)	1104
Tru9I	TTAA	1 cut(s)	1104
TscAI	CASTG	4 cut(s)	169, 486, 751, 861
TseFI	GTSAC	4 cut(s)	224, 499, 930, 937
TseI	GCWGC	5 cut(s)	197, 200, 536, 578, 761
Tsp45I	GTSAC	4 cut(s)	224, 499, 930, 937
TspDTI	ATGAA	3 cut(s)	138, 295, 1098
TspRI	CASTG	4 cut(s)	169, 486, 751, 861
Tth111I	GACNNNGTC	1 cut(s)	752
XapI	RAATTY	3 cut(s)	216, 716, 766
XmiI	GTMKAC	2 cut(s)	476, 486
XspI	CTAG	2 cut(s)	213, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.