Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

67205043 .. 67241211

Gene Structure 36169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG462000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTGAGAAATTGTCCGGTGGAAGTAGAGGGAAGCCTATACGATGCAGAGCTGCGGTGTGTCGGAAGCCAAGCGAGCCGCTAGTGATCGAAGAAATCATAGTGGCACCGCCGATGCCTCATGAAGTCCGCGTTCGAATTATTTATACTTCTCTGTGCCACAGTGATCTCACTTTCTGGAAAATGAAGGACTTTCCTGCAATTTTCCCTAGAATTCTCGGTCACGAAGCTATCGGGGTTGTGGAGAGTGTTGGGGAGGATGTGACTGAGGTAGCCGACGGAGATACTGTCATCCCCACATTGATTTCGGATTGTGGAGAATGTGTAGATTGCCGATCAACAAAGAGCAATCTTTGTTCAAAACTTCCCTTCAAGATCTCACCTTTTATGCCAAGACATGAGACAAGCAGATTCACAGACCTCAATGGCGAGGTTATACACCATTTTGTATCTGTATCTAGTTTTAGCGAGTATACAGTGGTGGACATAGCCCATCTCACAAAGATAGACTCTGCAATACCTTTAACCAAGGCTGCAGGCCTTCTAGGTTGTGGAGTATCAACAGGGGTTGGTGCTGCTTGGAGAACAGCAAATGTGGAGCCGGGATCAACTGTGGCTATATTTGGGCTTGGTTCAATTGGATTGGCTGTGGCAGAGGGTGCAAGACTGTGTGGAGCTACTAGAATTATCGGGGTGGATGTTAACCAAGACAAATTTGAAATTGGAAAGAAGTTTGGAGTCACTGACTTCATCAACCCTGCAAATTGTGAGAATAAATCTGTGACAGAGGTGATGATTGAGATGACTGACGGGGGTGCAGATTATTGCTTTGAATGTGTTGGAATTGCATCACTGGTGCAACAAGCTTATGCTTGCTGCCGGAAGGGTTGGGGAAAAACAATTGTATTAGGTGTGGACCAGCCAGGGTCGCAGTTGACCCTTCCTTCATACGATGTGCTTCATAAGGGTAAAACCCTCATGGGATCCTTCTTTGGAGGACTCAAACCTAAGTCGGATATCCCTGTGCTCCTGAATCGCTACATCAACAAGGAACTACAACTAGATGAGTTTGTGACACATGAGGTGACATTTGAAGACATCAACAAAGCTTTTGATTTACTCATTGAAGGGAAATGTCTCCGTTGTGTAATCTGTATGAACAACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

389

Amino Acids

42.17

Weight (kDa)

5.77

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	40 - 170	2.9e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	213 - 344	1.4e-27	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	473
AccII	CGCG	1 cut(s)	132
AciI	CCGC	4 cut(s)	56, 80, 110, 130
AclWI	GGATC	3 cut(s)	613, 978, 991
AcsI	RAATTY	2 cut(s)	213, 713
AgsI	TTSAA	7 cut(s)	360, 373, 636, 719, 833, 1094, 1127
AjnI	CCWGG	1 cut(s)	922
AluBI	AGCT	5 cut(s)	53, 230, 677, 866, 1109
AluI	AGCT	5 cut(s)	53, 230, 677, 866, 1109
Alw21I	GWGCWC	1 cut(s)	1029
Alw26I	GTCTC	2 cut(s)	395, 1142
AlwI	GGATC	3 cut(s)	613, 978, 991
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	4 cut(s)	53, 533, 575, 876
ApoI	RAATTY	2 cut(s)	213, 713
AspS9I	GGNCC	1 cut(s)	916
AsuC2I	CCSGG	1 cut(s)	603
AsuHPI	GGTGA	3 cut(s)	372, 802, 1096
AsuII	TTCGAA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	916
BamHI	GGATCC	1 cut(s)	983
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	1101
Bbv12I	GWGCWC	1 cut(s)	1029
BbvI	GCAGC	4 cut(s)	40, 520, 562, 863
BccI	CCATC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	924
BcnI	CCSGG	1 cut(s)	603
BcoDI	GTCTC	2 cut(s)	395, 1142
BfaI	CTAG	6 cut(s)	83, 210, 459, 545, 681, 1061
BfmI	CTRYAG	1 cut(s)	534
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	5 cut(s)	54, 80, 534, 576, 877
BlsI	GCNGC	5 cut(s)	55, 81, 535, 577, 878
Bme1390I	CCNGG	2 cut(s)	603, 924
Bme18I	GGWCC	1 cut(s)	916
BmgT120I	GGNCC	1 cut(s)	916
BmiI	GGNNCC	3 cut(s)	108, 600, 985
BmrFI	CCNGG	2 cut(s)	603, 924
BmsI	GCATC	3 cut(s)	35, 105, 857
BpiI	GAAGAC	1 cut(s)	1101
Bpu14I	TTCGAA	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	528, 923
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 309, 339
Bse1I	ACTGG	2 cut(s)	858, 1165
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	2 cut(s)	528, 923
BseGI	GGATG	3 cut(s)	265, 291, 703
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	858, 1165
BseXI	GCAGC	4 cut(s)	40, 520, 562, 863
BsgI	GTGCAG	1 cut(s)	837
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	540
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	1029
BsiSI	CCGG	3 cut(s)	18, 602, 880
BsmAI	GTCTC	2 cut(s)	395, 1142
BsnI	GGCC	1 cut(s)	540
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	1029
Bsp143I	GATC	6 cut(s)	87, 166, 335, 375, 605, 983
BspACI	CCGC	4 cut(s)	56, 80, 110, 130
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	108, 600, 985
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	3 cut(s)	613, 978, 991
BspT104I	TTCGAA	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	858, 1165
BssECI	CCNNGG	2 cut(s)	528, 923
BssMI	GATC	6 cut(s)	87, 166, 335, 375, 605, 983
BssNAI	GTATAC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	528
Bst1107I	GTATAC	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	5 cut(s)	164, 289, 478, 613, 669
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	77, 538, 874
BstDEI	CTNAG	3 cut(s)	6, 267, 1008
BstF5I	GGATG	3 cut(s)	265, 291, 703
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	6 cut(s)	90, 169, 338, 378, 608, 986
BstMAI	GTCTC	2 cut(s)	395, 1142
BstMBI	GATC	6 cut(s)	87, 166, 335, 375, 605, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 659, 928
BstNI	CCWGG	1 cut(s)	924
BstSCI	CCNGG	2 cut(s)	601, 922
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	40, 520, 562, 863
BstV2I	GAAGAC	1 cut(s)	1101
BstX2I	RGATCY	2 cut(s)	375, 983
BstYI	RGATCY	2 cut(s)	375, 983
BstZ17I	GTATAC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	265, 291, 703
BtsIMutI	CAGTG	4 cut(s)	169, 483, 741, 851
Cac8I	GCNNGC	3 cut(s)	77, 538, 874
CciI	TCATGA	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	916
CviAII	CATG	4 cut(s)	122, 398, 979, 1079
DdeI	CTNAG	3 cut(s)	6, 267, 1008
DpnI	GATC	6 cut(s)	89, 168, 337, 377, 607, 985
DpnII	GATC	6 cut(s)	87, 166, 335, 375, 605, 983
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	1018
Eco47I	GGWCC	1 cut(s)	916
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	922
EcoRV	GATATC	1 cut(s)	1018
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	4 cut(s)	125, 401, 982, 1082
FatI	CATG	4 cut(s)	121, 397, 978, 1078
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	5 cut(s)	54, 80, 534, 576, 877
FokI	GGATG	3 cut(s)	272, 278, 710
Fsp4HI	GCNGC	5 cut(s)	54, 80, 534, 576, 877
FspBI	CTAG	6 cut(s)	83, 210, 459, 545, 681, 1061
GluI	GCNGC	5 cut(s)	54, 80, 534, 576, 877
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	3 cut(s)	18, 602, 880
Hin1II	CATG	4 cut(s)	125, 401, 982, 1082
HincII	GTYRAC	2 cut(s)	703, 936
HindII	GTYRAC	2 cut(s)	703, 936
HindIII	AAGCTT	2 cut(s)	864, 1107
HinfI	GANTC	5 cut(s)	411, 509, 738, 999, 1033
HpaI	GTTAAC	1 cut(s)	703
HpaII	CCGG	3 cut(s)	18, 602, 880
HphI	GGTGA	3 cut(s)	372, 802, 1096
Hpy166II	GTNNAC	5 cut(s)	474, 484, 703, 916, 936
Hpy188I	TCNGA	3 cut(s)	66, 310, 1015
Hpy188III	TCNNGA	5 cut(s)	122, 178, 224, 373, 1030
Hpy8I	GTNNAC	5 cut(s)	474, 484, 703, 916, 936
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	8 cut(s)	181, 379, 551, 877, 950, 954, 997, 1121
HpyCH4III	ACNGT	5 cut(s)	164, 289, 478, 613, 669
HpyCH4V	TGCA	9 cut(s)	48, 200, 515, 536, 662, 761, 818, 848, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 659, 928
HpyF3I	CTNAG	3 cut(s)	6, 267, 1008
Hsp92II	CATG	4 cut(s)	125, 401, 982, 1082
KspAI	GTTAAC	1 cut(s)	703
Kzo9I	GATC	6 cut(s)	87, 166, 335, 375, 605, 983
LmnI	GCTCC	3 cut(s)	598, 674, 1032
Lsp1109I	GCAGC	4 cut(s)	40, 520, 562, 863
LweI	GCATC	3 cut(s)	35, 105, 857
MaeI	CTAG	6 cut(s)	83, 210, 459, 545, 681, 1061
MaeIII	GTNAC	6 cut(s)	221, 262, 739, 781, 1072, 1084
MalI	GATC	6 cut(s)	89, 168, 337, 377, 607, 985
MboI	GATC	6 cut(s)	87, 166, 335, 375, 605, 983
MboII	GAAGA	2 cut(s)	104, 1106
MfeI	CAATTG	2 cut(s)	636, 900
MflI	RGATCY	2 cut(s)	375, 983
MhlI	GDGCHC	1 cut(s)	1029
MlyI	GAGTC	3 cut(s)	503, 747, 993
MmeI	TCCRAC	3 cut(s)	44, 820, 993
MseI	TTAA	2 cut(s)	524, 702
MspI	CCGG	3 cut(s)	18, 602, 880
MspR9I	CCNGG	2 cut(s)	603, 924
MunI	CAATTG	2 cut(s)	636, 900
MvaI	CCWGG	1 cut(s)	924
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	76, 659, 928
NciI	CCSGG	1 cut(s)	603
NdeII	GATC	6 cut(s)	87, 166, 335, 375, 605, 983
NlaIII	CATG	4 cut(s)	125, 401, 982, 1082
NlaIV	GGNNCC	3 cut(s)	108, 600, 985
NmuCI	GTSAC	6 cut(s)	221, 262, 739, 781, 1072, 1084
NspV	TTCGAA	1 cut(s)	136
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	411, 1033
PkrI	GCNGC	5 cut(s)	55, 81, 535, 577, 878
PleI	GAGTC	3 cut(s)	503, 746, 993
PpsI	GAGTC	3 cut(s)	503, 746, 993
Psp6I	CCWGG	1 cut(s)	922
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	3 cut(s)	108, 600, 985
PspPI	GGNCC	1 cut(s)	916
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	2 cut(s)	375, 983
SaqAI	TTAA	2 cut(s)	524, 702
SatI	GCNGC	5 cut(s)	54, 80, 534, 576, 877
Sau3AI	GATC	6 cut(s)	87, 166, 335, 375, 605, 983
Sau96I	GGNCC	1 cut(s)	916
SchI	GAGTC	3 cut(s)	503, 747, 993
ScrFI	CCNGG	2 cut(s)	603, 924
SduI	GDGCHC	1 cut(s)	1029
SfaNI	GCATC	3 cut(s)	35, 105, 857
SfcI	CTRYAG	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	1 cut(s)	916
SseBI	AGGCCT	1 cut(s)	540
SsiI	CCGC	4 cut(s)	56, 80, 110, 130
SspMI	CTAG	6 cut(s)	83, 210, 459, 545, 681, 1061
StuI	AGGCCT	1 cut(s)	540
StyD4I	CCNGG	2 cut(s)	601, 922
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	164, 289, 478, 613, 669
TaqI	TCGA	2 cut(s)	90, 136
TaqII	GACCGA	1 cut(s)	209
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	411, 1033
Tru1I	TTAA	2 cut(s)	524, 702
Tru9I	TTAA	2 cut(s)	524, 702
TscAI	CASTG	4 cut(s)	169, 483, 748, 858
TseFI	GTSAC	6 cut(s)	221, 262, 739, 781, 1072, 1084
TseI	GCWGC	4 cut(s)	53, 533, 575, 876
Tsp45I	GTSAC	6 cut(s)	221, 262, 739, 781, 1072, 1084
TspDTI	ATGAA	5 cut(s)	138, 200, 739, 936, 950
TspGWI	ACGGA	2 cut(s)	294, 1130
TspRI	CASTG	4 cut(s)	169, 483, 748, 858
VpaK11BI	GGWCC	1 cut(s)	916
XapI	RAATTY	2 cut(s)	213, 713
XmiI	GTMKAC	1 cut(s)	473
XspI	CTAG	6 cut(s)	83, 210, 459, 545, 681, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.