Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

6216523 .. 6219887

Gene Structure 3365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011028

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTGAGAAATTGTCCGGTGGAAGTAGAGGGAAGCCTATACGATGCAGAGGACTAAGGATCAGATATATTTGGGTTGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTAAGTGAAGGAGATACTGTCATACCAACATTCATGGCAGACTGTGGAGAATGTGGAGATTGCAATTCAGCAAAGAGCAACCTATGTTCAAAACTACCCTTCAAGGTCTCACCTTTTATGCCAAGATATGAGACAAGCAGATTCACAGACCTCAACGGCGAGGCTCTGTACCATTTCCTATCTGTGTCTAGTTTTACTGAGTATACAGTGGTAGACATAGCCCATGTCACAAAGATTGATTCTGGAATACCTCTAACCAAGGCTGCAGGCCTTCTGAGCTGTGGAGTATCAACAGGGGTTGGTGCTGCATGGAGAACGGCAAATGTAGAGCCAGGATCAACTGTGGCTATATTCGGGCTCGGTTCAATTGGATTAGCTGTTGCAGAGGGAGCAAGACTTTGTGGAGCTACAAGAATTATCGGCGTGGATGTGAACGAAGACAAATTTGAAGTTGGGAAAAAGTTTGGACTCACTGACTTTGTCAACGCTTCAAATTCTGAGAATAAATCTGCGAGCGAGGTCATAATTGAGATGACTGACGGGGGTGCAGATTATTGCTTTGAATGTGTGGGAATGGCATCAGTGGTGCAAGAAGCTTATGCTAGTTGCCGGAAGGGTTGGGGAAAAACAATTGTGTTAGGAGTTGACAGGCCAGGGTCACAAGTGAGCATTTCTGCAAATGATATCCTTTGCACTGGAAAATCCCTCATGGGAGTCTTATTTGGAGGACTCAAACCCAAATCGGATATTCCTATTCTCCTCAATCGCTACATCAACAAGGTGATTTTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

301

Amino Acids

31.85

Weight (kDa)

5.85

Isoelectric Point (pI)

23.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	26 - 116	1e-06	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	159 - 289	1.5e-25	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	311, 321
AclWI	GGATC	2 cut(s)	68, 451
AcsI	RAATTY	2 cut(s)	551, 601
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	6 cut(s)	198, 211, 474, 557, 600, 671
AjnI	CCWGG	2 cut(s)	439, 760
AluBI	AGCT	4 cut(s)	387, 485, 515, 704
AluI	AGCT	4 cut(s)	387, 485, 515, 704
Alw26I	GTCTC	2 cut(s)	220, 233
AlwI	GGATC	2 cut(s)	68, 451
AoxI	GGCC	2 cut(s)	376, 758
ApeKI	GCWGC	2 cut(s)	371, 413
ApoI	RAATTY	2 cut(s)	551, 601
AsuHPI	GGTGA	2 cut(s)	210, 901
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	358, 400
BceAI	ACGGC	2 cut(s)	280, 441
BciT130I	CCWGG	2 cut(s)	441, 762
BcoDI	GTCTC	2 cut(s)	220, 233
BfaI	CTAG	2 cut(s)	297, 711
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	2 cut(s)	372, 414
BlsI	GCNGC	2 cut(s)	373, 415
Bme1390I	CCNGG	2 cut(s)	441, 762
BmrFI	CCNGG	2 cut(s)	441, 762
BmsI	GCATC	2 cut(s)	35, 695
BpiI	GAAGAC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	366, 761
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	441, 762
BseDI	CCNNGG	2 cut(s)	366, 761
BseGI	GGATG	2 cut(s)	103, 541
BseMII	CTCAG	3 cut(s)	297, 374, 597
BseNI	ACTGG	1 cut(s)	808
BseRI	GAGGAG	1 cut(s)	857
BseXI	GCAGC	2 cut(s)	358, 400
BsgI	GTGCAG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	378, 760
BsiSI	CCGG	2 cut(s)	18, 718
BsmAI	GTCTC	2 cut(s)	220, 233
BsnI	GGCC	2 cut(s)	378, 760
Bso31I	GGTCTC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	2 cut(s)	60, 443
BspANI	GGCC	2 cut(s)	378, 760
BspCNI	CTCAG	3 cut(s)	298, 375, 598
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	2 cut(s)	68, 451
BspTNI	GGTCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	808
BssECI	CCNNGG	2 cut(s)	366, 761
BssMI	GATC	2 cut(s)	60, 443
BssNAI	GTATAC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	441, 762
Bst4CI	ACNGT	4 cut(s)	127, 152, 316, 451
BstC8I	GCNNGC	2 cut(s)	376, 622
BstDEI	CTNAG	5 cut(s)	6, 56, 306, 383, 606
BstF5I	GGATG	2 cut(s)	103, 541
BstKTI	GATC	2 cut(s)	63, 446
BstMAI	GTCTC	2 cut(s)	220, 233
BstMBI	GATC	2 cut(s)	60, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 497
BstNI	CCWGG	2 cut(s)	441, 762
BstSCI	CCNGG	2 cut(s)	439, 760
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	358, 400
BstV2I	GAAGAC	1 cut(s)	552
BstZ17I	GTATAC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	378, 760
BtsCI	GGATG	2 cut(s)	103, 541
BtsIMutI	CAGTG	4 cut(s)	321, 579, 696, 801
Cac8I	GCNNGC	2 cut(s)	376, 622
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	4 cut(s)	142, 332, 417, 817
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	5 cut(s)	6, 56, 306, 383, 606
DpnI	GATC	2 cut(s)	62, 445
DpnII	GATC	2 cut(s)	60, 443
DraI	TTTAAA	1 cut(s)	897
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	793
EcoRII	CCWGG	2 cut(s)	439, 760
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	4 cut(s)	145, 335, 420, 820
FatI	CATG	4 cut(s)	141, 331, 416, 816
FblI	GTMKAC	2 cut(s)	311, 321
Fnu4HI	GCNGC	2 cut(s)	372, 414
FokI	GGATG	2 cut(s)	110, 548
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	372, 414
FspBI	CTAG	2 cut(s)	297, 711
GluI	GCNGC	2 cut(s)	372, 414
HaeIII	GGCC	2 cut(s)	378, 760
HapII	CCGG	2 cut(s)	18, 718
Hin1II	CATG	4 cut(s)	145, 335, 420, 820
HincII	GTYRAC	2 cut(s)	592, 754
HindII	GTYRAC	2 cut(s)	592, 754
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	5 cut(s)	249, 347, 576, 822, 837
HpaII	CCGG	2 cut(s)	18, 718
HphI	GGTGA	2 cut(s)	210, 901
Hpy166II	GTNNAC	5 cut(s)	312, 322, 541, 592, 754
Hpy188I	TCNGA	4 cut(s)	65, 384, 607, 853
Hpy188III	TCNNGA	1 cut(s)	351
Hpy8I	GTNNAC	5 cut(s)	312, 322, 541, 592, 754
HpyAV	CCTTC	4 cut(s)	110, 217, 389, 715
HpyCH4III	ACNGT	4 cut(s)	127, 152, 316, 451
HpyCH4V	TGCA	9 cut(s)	48, 171, 374, 416, 491, 656, 697, 785, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 497
HpyF3I	CTNAG	5 cut(s)	6, 56, 306, 383, 606
Hsp92II	CATG	4 cut(s)	145, 335, 420, 820
Kzo9I	GATC	2 cut(s)	60, 443
LmnI	GCTCC	2 cut(s)	497, 512
Lsp1109I	GCAGC	2 cut(s)	358, 400
LweI	GCATC	2 cut(s)	35, 695
MaeI	CTAG	2 cut(s)	297, 711
MaeIII	GTNAC	2 cut(s)	334, 765
MalI	GATC	2 cut(s)	62, 445
MboI	GATC	2 cut(s)	60, 443
MboII	GAAGA	1 cut(s)	557
MfeI	CAATTG	2 cut(s)	474, 738
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	8 cut(s)	11, 172, 474, 522, 551, 601, 633, 738
MlyI	GAGTC	3 cut(s)	570, 831, 831
MseI	TTAA	1 cut(s)	896
MspI	CCGG	2 cut(s)	18, 718
MspR9I	CCNGG	2 cut(s)	441, 762
MunI	CAATTG	2 cut(s)	474, 738
MvaI	CCWGG	2 cut(s)	441, 762
MwoI	GCNNNNNNNGC	2 cut(s)	384, 497
NdeII	GATC	2 cut(s)	60, 443
NlaIII	CATG	4 cut(s)	145, 335, 420, 820
NmuCI	GTSAC	2 cut(s)	334, 765
PceI	AGGCCT	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	249, 347
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	373, 415
PleI	GAGTC	3 cut(s)	570, 830, 831
PpsI	GAGTC	3 cut(s)	570, 830, 831
Psp6I	CCWGG	2 cut(s)	439, 760
PspGI	CCWGG	2 cut(s)	439, 760
PstI	CTGCAG	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	587
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	896
SatI	GCNGC	2 cut(s)	372, 414
Sau3AI	GATC	2 cut(s)	60, 443
SchI	GAGTC	3 cut(s)	570, 831, 831
ScrFI	CCNGG	2 cut(s)	441, 762
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	2 cut(s)	35, 695
SfcI	CTRYAG	1 cut(s)	372
Sse9I	AATT	8 cut(s)	11, 172, 474, 522, 551, 601, 633, 738
SseBI	AGGCCT	1 cut(s)	378
SspMI	CTAG	2 cut(s)	297, 711
StuI	AGGCCT	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	439, 760
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	4 cut(s)	127, 152, 316, 451
TasI	AATT	8 cut(s)	11, 172, 474, 522, 551, 601, 633, 738
TfiI	GAWTC	2 cut(s)	249, 347
Tru1I	TTAA	1 cut(s)	896
Tru9I	TTAA	1 cut(s)	896
TscAI	CASTG	4 cut(s)	321, 586, 696, 808
TseFI	GTSAC	2 cut(s)	334, 765
TseI	GCWGC	2 cut(s)	371, 413
Tsp45I	GTSAC	2 cut(s)	334, 765
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	4 cut(s)	321, 586, 696, 808
Tth111I	GACNNNGTC	1 cut(s)	587
XapI	RAATTY	2 cut(s)	551, 601
XmiI	GTMKAC	2 cut(s)	311, 321
XspI	CTAG	2 cut(s)	297, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.