Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Forward (+)

245412 .. 248304

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1004100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGCATCAGAGATTGTCAAGTGGAAGCAGATGGAGAGGGAAGCCTATTCGATGCAGAGCTGCGGTGAGTCGGAAGGCAGGAGAGCCGCTAGTTCTAGAAGAGATCCTGGTGGCGCCGCCAATGCCTCATGAAGTCCGCATCCGAATTATCTGTACCTCTCTCTGCCACAGCGATATCACTTTCTGGAAAATGAAGGACTTTCCTGCAATTTTCCCCAGAATTCTTGGTCATGAAGCTGTGGGGGTTGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTCTCAGAAGGAGATACAGTCATCCCAACTTTCATGCCAGAATGTGGAGAATGCGTAGATTGCAAATCCACAAAGAGCCACCTATGTACAAAACTCCCCTTCAAGCTCTCACCTTTTATGCCAAGACACGAGACTAGCCGATTCACAGACCTCAATGGGGAGGTTCTATACCATTTTTTGTTCGTGTCTAGTTTTGCAGAGTATACAGTGGTTGACATAGCCCATGTCACAAAAATTGACCCTGCAATACCTCCAAATAGGGCATGCCTTCTCGGCTGTGGAGTATCAACAGGAGTTGGAGCTGCTTGGAAGACAGCAAATGTGGAGAAGGGATCAACTGTTGCTATATTTGGGCTAGGTTCAATTGGATTAGCTGTCGCGGAGGGAGCAAGACTTTGTGGAGCTACCAGAATTATTGGAGTCGATGTAAATCCGGACAAATTTGAAATTGGGAAGAAGTTGGGCCTCACCGACTTTGTGAATGCTGCAACTTGTGAGAATAAATCTGCGAGCCAGGTGATCATTGAGATGACTGGCGGGGGTGCAGACTATTGCTTTGAATGTGTTGGACTGGCATCATTGGTGCAAGAAGCTTATGCTTGTAGCCGAAAGGGTTGGGGAAAAACAATCGTGTTAGGTGTGGACAAACCAGGGTCAAGGGTGAGCCTTCCCTCTAGTGATATCCTTCACAGCGGCAAAACCCTCATGGGATCCTTATTCGGAGGACTCAAACCTAAATCGGATATCCCTGCCCTCATCAATCGTTACATGGACAAGGAACTACAACTGGATGAGTTTGTGACAAATGAGGTGAGGTTTGAAGACATCAACAAAGCTTTCGATTTGCTCATTGAAGGGCAATGCCTTCGATGTGTAATCTATATGAGCAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

392

Amino Acids

42.52

Weight (kDa)

6.04

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	43 - 172	1.2e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	215 - 347	1.4e-25	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	482
AccII	CGCG	1 cut(s)	659
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	7 cut(s)	65, 89, 119, 139, 659, 816, 972
AclWI	GGATC	4 cut(s)	100, 619, 984, 997
AcsI	RAATTY	2 cut(s)	222, 719
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	2 cut(s)	157, 367
AfiI	CCNNNNNNNGG	2 cut(s)	323, 436
AgsI	TTSAA	6 cut(s)	382, 642, 725, 839, 1100, 1133
AjnI	CCWGG	3 cut(s)	108, 792, 928
AluBI	AGCT	8 cut(s)	62, 239, 385, 581, 653, 683, 872, 1115
AluI	AGCT	8 cut(s)	62, 239, 385, 581, 653, 683, 872, 1115
Alw26I	GTCTC	2 cut(s)	286, 404
AlwI	GGATC	4 cut(s)	100, 619, 984, 997
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	1 cut(s)	742
ApeKI	GCWGC	3 cut(s)	62, 581, 764
ApoI	RAATTY	2 cut(s)	222, 719
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	742
AsuHPI	GGTGA	6 cut(s)	79, 381, 739, 808, 952, 1102
BamHI	GGATCC	1 cut(s)	989
BanI	GGYRCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	407
BbsI	GAAGAC	2 cut(s)	596, 1107
BbvI	GCAGC	3 cut(s)	49, 568, 751
BccI	CCATC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	1127, 1161
BciT130I	CCWGG	3 cut(s)	110, 794, 930
BclI	TGATCA	1 cut(s)	798
BcoDI	GTCTC	2 cut(s)	286, 404
BfaI	CTAG	6 cut(s)	92, 98, 414, 468, 635, 954
BfoI	RGCGCY	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	552
BisI	GCNGC	6 cut(s)	63, 89, 119, 582, 765, 973
BlsI	GCNGC	6 cut(s)	64, 90, 120, 583, 766, 974
Bme1390I	CCNGG	3 cut(s)	110, 794, 930
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	2 cut(s)	117, 991
BmrFI	CCNGG	3 cut(s)	110, 794, 930
BmsI	GCATC	4 cut(s)	16, 44, 150, 863
BpiI	GAAGAC	2 cut(s)	596, 1107
BsaBI	GATNNNNATC	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	929
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	6 cut(s)	282, 312, 318, 348, 690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 436
Bse1I	ACTGG	3 cut(s)	817, 855, 1071
Bse3DI	GCAATG	2 cut(s)	1145, 1174
Bse8I	GATNNNNATC	1 cut(s)	708
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	3 cut(s)	110, 794, 930
BseDI	CCNNGG	1 cut(s)	929
BseGI	GGATG	4 cut(s)	141, 274, 300, 1075
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	2 cut(s)	323, 436
BseMI	GCAATG	2 cut(s)	1145, 1174
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	3 cut(s)	817, 855, 1071
BseXI	GCAGC	3 cut(s)	49, 568, 751
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	1 cut(s)	744
BshNI	GGYRCC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	323, 436
BsmAI	GTCTC	2 cut(s)	286, 404
BsmI	GAATGC	2 cut(s)	335, 766
BsnI	GGCC	1 cut(s)	744
Bso31I	GGTCTC	1 cut(s)	286
Bsp13I	TCCGGA	1 cut(s)	712
Bsp1407I	TGTACA	1 cut(s)	365
Bsp143I	GATC	4 cut(s)	105, 611, 798, 989
BspACI	CCGC	7 cut(s)	65, 89, 119, 139, 659, 816, 972
BspANI	GGCC	1 cut(s)	744
BspCNI	CTCAG	1 cut(s)	296
BspEI	TCCGGA	1 cut(s)	712
BspFNI	CGCG	1 cut(s)	659
BspHI	TCATGA	2 cut(s)	130, 232
BspLI	GGNNCC	2 cut(s)	117, 991
BspPI	GGATC	4 cut(s)	100, 619, 984, 997
BspT107I	GGYRCC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	2 cut(s)	1145, 1174
BsrGI	TGTACA	1 cut(s)	365
BsrI	ACTGG	3 cut(s)	817, 855, 1071
BssECI	CCNNGG	1 cut(s)	929
BssMI	GATC	4 cut(s)	105, 611, 798, 989
BssNAI	GTATAC	1 cut(s)	483
BssNI	GRCGYC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	407
Bst1107I	GTATAC	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	3 cut(s)	110, 794, 930
Bst4CI	ACNGT	3 cut(s)	298, 487, 619
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	544, 790
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	4 cut(s)	141, 274, 300, 1075
BstFNI	CGCG	1 cut(s)	659
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	4 cut(s)	108, 614, 801, 992
BstMAI	GTCTC	2 cut(s)	286, 404
BstMBI	GATC	4 cut(s)	105, 611, 798, 989
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 339, 552, 665
BstNI	CCWGG	3 cut(s)	110, 794, 930
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	3 cut(s)	108, 792, 928
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	3 cut(s)	49, 568, 751
BstV2I	GAAGAC	2 cut(s)	596, 1107
BstX2I	RGATCY	2 cut(s)	105, 989
BstYI	RGATCY	2 cut(s)	105, 989
BstZ17I	GTATAC	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	744
BtsCI	GGATG	4 cut(s)	141, 274, 300, 1075
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	544, 790
CciI	TCATGA	2 cut(s)	130, 232
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	742
Csp6I	GTAC	2 cut(s)	156, 366
CviAII	CATG	7 cut(s)	131, 233, 313, 503, 543, 985, 1048
CviQI	GTAC	2 cut(s)	156, 366
DdeI	CTNAG	1 cut(s)	283
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	4 cut(s)	107, 613, 800, 991
DpnII	GATC	4 cut(s)	105, 611, 798, 989
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	286
Eco32I	GATATC	3 cut(s)	178, 961, 1024
EcoRI	GAATTC	1 cut(s)	222
EcoRII	CCWGG	3 cut(s)	108, 792, 928
EcoRV	GATATC	3 cut(s)	178, 961, 1024
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
FaeI	CATG	7 cut(s)	134, 236, 316, 506, 546, 988, 1051
FatI	CATG	7 cut(s)	130, 232, 312, 502, 542, 984, 1047
FauI	CCCGC	1 cut(s)	809
FbaI	TGATCA	1 cut(s)	798
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	6 cut(s)	63, 89, 119, 582, 765, 973
FokI	GGATG	4 cut(s)	128, 281, 287, 1082
Fsp4HI	GCNGC	6 cut(s)	63, 89, 119, 582, 765, 973
FspBI	CTAG	6 cut(s)	92, 98, 414, 468, 635, 954
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	6 cut(s)	63, 89, 119, 582, 765, 973
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	744
HapII	CCGG	1 cut(s)	713
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	7 cut(s)	134, 236, 316, 506, 546, 988, 1051
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	2 cut(s)	870, 1113
HinfI	GANTC	4 cut(s)	70, 420, 699, 1005
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	6 cut(s)	79, 381, 739, 808, 952, 1102
Hpy166II	GTNNAC	3 cut(s)	483, 493, 922
Hpy188I	TCNGA	6 cut(s)	12, 75, 146, 286, 1001, 1021
Hpy188III	TCNNGA	5 cut(s)	98, 131, 187, 233, 713
Hpy8I	GTNNAC	3 cut(s)	483, 493, 922
HpyCH4III	ACNGT	3 cut(s)	298, 487, 619
HpyCH4V	TGCA	8 cut(s)	57, 209, 342, 476, 524, 767, 824, 865
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 339, 552, 665
HpyF3I	CTNAG	1 cut(s)	283
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	7 cut(s)	134, 236, 316, 506, 546, 988, 1051
HspAI	GCGC	1 cut(s)	116
KasI	GGCGCC	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	798
Kzo9I	GATC	4 cut(s)	105, 611, 798, 989
LmnI	GCTCC	4 cut(s)	4, 578, 665, 680
Lsp1109I	GCAGC	3 cut(s)	49, 568, 751
LweI	GCATC	4 cut(s)	16, 44, 150, 863
MaeI	CTAG	6 cut(s)	92, 98, 414, 468, 635, 954
MaeIII	GTNAC	3 cut(s)	505, 1043, 1078
MalI	GATC	4 cut(s)	107, 613, 800, 991
MboI	GATC	4 cut(s)	105, 611, 798, 989
MboII	GAAGA	4 cut(s)	113, 601, 745, 1112
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	2 cut(s)	105, 989
MluCI	AATT	8 cut(s)	147, 210, 222, 513, 642, 690, 719, 726
Mly113I	GGCGCC	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	79, 708, 999
MmeI	TCCRAC	3 cut(s)	53, 556, 826
MroI	TCCGGA	1 cut(s)	712
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	972
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	3 cut(s)	110, 794, 930
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	2 cut(s)	335, 766
MvaI	CCWGG	3 cut(s)	110, 794, 930
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	4 cut(s)	124, 339, 552, 665
NarI	GGCGCC	1 cut(s)	116
NdeII	GATC	4 cut(s)	105, 611, 798, 989
NlaIII	CATG	7 cut(s)	134, 236, 316, 506, 546, 988, 1051
NlaIV	GGNNCC	2 cut(s)	117, 991
NmeAIII	GCCGAG	1 cut(s)	531
NmuCI	GTSAC	2 cut(s)	505, 1078
NspI	RCATGY	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	546
PagI	TCATGA	2 cut(s)	130, 232
PctI	GAATGC	2 cut(s)	335, 766
PfeI	GAWTC	1 cut(s)	420
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	6 cut(s)	64, 90, 120, 583, 766, 974
PleI	GAGTC	3 cut(s)	78, 707, 999
PluTI	GGCGCC	1 cut(s)	119
PpsI	GAGTC	3 cut(s)	78, 707, 999
Psp6I	CCWGG	3 cut(s)	108, 792, 928
PspGI	CCWGG	3 cut(s)	108, 792, 928
PspN4I	GGNNCC	2 cut(s)	117, 991
PspPI	GGNCC	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	105, 989
RsaI	GTAC	2 cut(s)	157, 367
RsaNI	GTAC	2 cut(s)	156, 366
RseI	CAYNNNNRTG	1 cut(s)	806
SatI	GCNGC	6 cut(s)	63, 89, 119, 582, 765, 973
Sau3AI	GATC	4 cut(s)	105, 611, 798, 989
Sau96I	GGNCC	1 cut(s)	742
SchI	GAGTC	3 cut(s)	79, 708, 999
ScrFI	CCNGG	3 cut(s)	110, 794, 930
SfaNI	GCATC	4 cut(s)	16, 44, 150, 863
SfoI	GGCGCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	806
SphI	GCATGC	1 cut(s)	546
Sse9I	AATT	8 cut(s)	147, 210, 222, 513, 642, 690, 719, 726
SsiI	CCGC	7 cut(s)	65, 89, 119, 139, 659, 816, 972
SspDI	GGCGCC	1 cut(s)	115
SspMI	CTAG	6 cut(s)	92, 98, 414, 468, 635, 954
StyD4I	CCNGG	3 cut(s)	108, 792, 928
TaaI	ACNGT	3 cut(s)	298, 487, 619
TaqI	TCGA	4 cut(s)	52, 702, 1119, 1147
TasI	AATT	8 cut(s)	147, 210, 222, 513, 642, 690, 719, 726
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	3 cut(s)	91, 121, 975
TfiI	GAWTC	1 cut(s)	420
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	2 cut(s)	505, 1078
TseI	GCWGC	3 cut(s)	62, 581, 764
Tsp45I	GTSAC	2 cut(s)	505, 1078
TspDTI	ATGAA	4 cut(s)	147, 209, 249, 301
TspRI	CASTG	1 cut(s)	492
Van91I	CCANNNNNTGG	1 cut(s)	323
XapI	RAATTY	2 cut(s)	222, 719
XbaI	TCTAGA	1 cut(s)	97
XceI	RCATGY	1 cut(s)	546
XmiI	GTMKAC	1 cut(s)	482
XspI	CTAG	6 cut(s)	92, 98, 414, 468, 635, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.