Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

47838498 .. 47840709

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0326700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTAAAGAGGAACTGTGTGAATCAGAGGGCCACAAATGAAAGCTTGAAGAGAATAAAGGGTGATTGGAACACTGCATTGTATTCTAAGCGGATCAAAAGTGAAACGAAACTGAAAAGCATTGGAGTTTCAAGCTCTTTTAAGATGTTTAATTTTTCCATGGATTCATTCCTTCAAGCAATGGGAGGGAACAGAGGAAGTGTAGATAGAGATCGAGGATTTGAGAGGGAACTTGAAGCAATGGGAGATATAAAGCACTGTAACATCGTGACTCTTAATGGTTACACGTATTGCAAGTCTATTCAAGTTGCACAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTGTGTCAACCGTACTTCTCAGACGGGGCTCAAGTATCGATTTGAGGTTGTGTTTCACTACAGCTATTTTGGATGTCTTGCAAATACTAATGTTAAGAGGTATTATTGACGCGCGCCTTGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

208

Amino Acids

23.04

Weight (kDa)

9.19

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	93 - 165	7.5e-12	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccII	CGCG	2 cut(s)	611, 613
AciI	CCGC	1 cut(s)	91
AclWI	GGATC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	7 cut(s)	49, 132, 176, 236, 305, 449, 470
AluBI	AGCT	4 cut(s)	45, 135, 325, 563
AluI	AGCT	4 cut(s)	45, 135, 325, 563
Alw21I	GWGCWC	1 cut(s)	426
Alw44I	GTGCAC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	30, 476
ApaLI	GTGCAC	1 cut(s)	422
AseI	ATTAAT	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	613, 615
AspS9I	GGNCC	3 cut(s)	30, 476, 494
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	426
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	558
BfuAI	ACCTGC	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	30, 476, 494
BmsI	GCATC	2 cut(s)	325, 335
BpuEI	CTTGAG	1 cut(s)	514
Bsa29I	ATCGAT	1 cut(s)	537
BsaAI	YACGTR	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	159, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	2 cut(s)	186, 246
Bse8I	GATNNNNATC	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	159, 453
BseGI	GGATG	3 cut(s)	350, 463, 577
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMI	GCAATG	2 cut(s)	186, 246
BseMII	CTCAG	1 cut(s)	532
BseNI	ACTGG	1 cut(s)	346
BsePI	GCGCGC	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	426
Bsh1236I	CGCG	2 cut(s)	611, 613
BshFI	GGCC	2 cut(s)	32, 478
BshVI	ATCGAT	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	485
BsnI	GGCC	2 cut(s)	32, 478
Bsp1286I	GDGCHC	2 cut(s)	426, 530
Bsp143I	GATC	2 cut(s)	93, 211
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	2 cut(s)	32, 478
BspCNI	CTCAG	1 cut(s)	531
BspDI	ATCGAT	1 cut(s)	537
BspFNI	CGCG	2 cut(s)	611, 613
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	186, 246
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	159, 453
BssHII	GCGCGC	1 cut(s)	611
BssMI	GATC	2 cut(s)	93, 211
BssT1I	CCWWGG	2 cut(s)	159, 453
Bst4CI	ACNGT	4 cut(s)	17, 260, 428, 511
Bst6I	CTCTTC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	2 cut(s)	87, 518
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	350, 463, 577
BstFNI	CGCG	2 cut(s)	611, 613
BstHHI	GCGC	2 cut(s)	613, 615
BstKTI	GATC	2 cut(s)	96, 214
BstMBI	GATC	2 cut(s)	93, 211
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	426
BstUI	CGCG	2 cut(s)	611, 613
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	32, 478
BsuTUI	ATCGAT	1 cut(s)	537
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	350, 463, 577
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	3 cut(s)	72, 256, 339
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	613
CfoI	GCGC	2 cut(s)	613, 615
Cfr13I	GGNCC	3 cut(s)	30, 476, 494
ClaI	ATCGAT	1 cut(s)	537
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	9 cut(s)	32, 45, 135, 325, 405, 452, 478, 528, 563
CviKI_1	RGCY	9 cut(s)	32, 45, 135, 325, 405, 452, 478, 528, 563
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	2 cut(s)	87, 518
DpnI	GATC	2 cut(s)	95, 213
DpnII	GATC	2 cut(s)	93, 211
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	2 cut(s)	159, 453
Eco24I	GRGCYC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	159, 453
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	159, 453
FaeI	CATG	1 cut(s)	163
FaiI	YATR	6 cut(s)	161, 251, 418, 420, 623, 625
FatI	CATG	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	418
FokI	GGATG	3 cut(s)	357, 470, 584
FriOI	GRGCYC	1 cut(s)	530
GlaI	GCGC	2 cut(s)	612, 614
HaeIII	GGCC	2 cut(s)	32, 478
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	2 cut(s)	613, 615
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	2 cut(s)	611, 613
HinP1I	GCGC	2 cut(s)	611, 613
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	2 cut(s)	43, 323
HinfI	GANTC	4 cut(s)	22, 164, 271, 371
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	424, 494, 507
Hpy188I	TCNGA	3 cut(s)	27, 409, 521
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	3 cut(s)	424, 494, 507
HpyAV	CCTTC	2 cut(s)	182, 507
HpyCH4III	ACNGT	4 cut(s)	17, 260, 428, 511
HpyCH4IV	ACGT	2 cut(s)	287, 318
HpyCH4V	TGCA	7 cut(s)	77, 294, 311, 348, 354, 424, 580
HpyF3I	CTNAG	2 cut(s)	87, 518
HpySE526I	ACGT	2 cut(s)	287, 318
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	2 cut(s)	611, 613
Kzo9I	GATC	2 cut(s)	93, 211
LpnPI	CCDG	3 cut(s)	327, 343, 394
LweI	GCATC	2 cut(s)	325, 335
MaeII	ACGT	2 cut(s)	287, 318
MaeIII	GTNAC	3 cut(s)	260, 268, 281
MalI	GATC	2 cut(s)	95, 213
MboI	GATC	2 cut(s)	93, 211
MboII	GAAGA	1 cut(s)	61
MfeI	CAATTG	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	426, 530
MluCI	AATT	3 cut(s)	151, 349, 444
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	8 cut(s)	3, 21, 179, 188, 209, 219, 537, 590
MseI	TTAA	7 cut(s)	5, 141, 150, 276, 399, 443, 593
MslI	CAYNNNNRTG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	349
MvnI	CGCG	2 cut(s)	611, 613
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	93, 211
NlaIII	CATG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	268
PauI	GCGCGC	1 cut(s)	611
PfeI	GAWTC	3 cut(s)	22, 164, 371
PflMI	CCANNNNNTGG	1 cut(s)	485
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	443
PspPI	GGNCC	3 cut(s)	30, 476, 494
PteI	GCGCGC	1 cut(s)	611
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	7 cut(s)	5, 141, 150, 276, 399, 443, 593
Sau3AI	GATC	2 cut(s)	93, 211
Sau96I	GGNCC	3 cut(s)	30, 476, 494
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	2 cut(s)	426, 530
SfaNI	GCATC	2 cut(s)	325, 335
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	3 cut(s)	151, 349, 444
SsiI	CCGC	1 cut(s)	91
StyI	CCWWGG	2 cut(s)	159, 453
TaaI	ACNGT	4 cut(s)	17, 260, 428, 511
TaiI	ACGT	2 cut(s)	290, 321
TaqI	TCGA	2 cut(s)	214, 537
TasI	AATT	3 cut(s)	151, 349, 444
TfiI	GAWTC	3 cut(s)	22, 164, 371
Tru1I	TTAA	7 cut(s)	5, 141, 150, 276, 399, 443, 593
Tru9I	TTAA	7 cut(s)	5, 141, 150, 276, 399, 443, 593
TscAI	CASTG	3 cut(s)	79, 263, 346
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	54, 156
TspRI	CASTG	3 cut(s)	79, 263, 346
Van91I	CCANNNNNTGG	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	494
VspI	ATTAAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.