Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Forward (+)

61626367 .. 61630272

Gene Structure 3906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG440000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCCTTGTAGGGTTGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTAAGTGAAGGAGATACTGTCATACCAACATTCATGGCAGACTGTGGAGAATGTGGAGATTGCAATTCAGCAAAGAGCAACCTTTGTTCAAAACTACCCTTCAAGGTCTCACCTTTTATGCCAAGATATGAGACAAGCAGATTCACAGACCTCAACGGCGAGGCTCTATACCATTTCCTATCTGTGTCTAGTTTTACTGAGTATACAGTGGTAGACATAGCCCATGTCACAAAGATTGATTCTGGAATACCTCTAACCAAGGCTGCAGGCCTTCTGAGCTGTGGAGTATCAACAGGGGTTGGTGCTGCATGGAGAACAGCAAATGTAGAGCCAGGATCAACTGTGGCTATATTTGGGCTCGGTTCAATTGGATTAGCTGTTGCAGAGGGAGCAAGACTTTGTGGAGCTACAAGAATTATCGGCGTGGATGTGAACGAAGACAAATTTGAAGTTGGGAAAAAGTTTGGACTCACTGACTTCGTCAACGCTTCAAATTCTGAGAATAAATCTGCGAGCGAGGTTATAATTGAGATGACTGACGGGGGTGCAGATTATTGCTTTGAATGTGTGGGAATGGCATCAGTGGTGCAAGAAGCTTATGCTAGTTGCCGGAAGGGTTGGGGAAAAACAATTGTGTTAGGAGTTGACAGACCAGGGTCACAAGTGAGCATTTCTGCAAGTGATATCCTTTGCACTGGAAAATCCCTCATGGGAGTCTTATTTGGAGGACTCAAACCCAAATCGGATATTCCTATTCTCCTCAATCGCTACATCAACAAGGAACTACAACTAGATGAGTTTGTGACACATGAAGTAACTTTTGAAGACATTAACAAAGCTTTTGATTTACTCGTTGAAGGGAAATGTTTGCGATGTGTAATCTGTATGAATGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

314

Amino Acids

33.51

Weight (kDa)

4.72

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	5 - 95	1.1e-06	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	138 - 268	2.3e-25	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	248, 258
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	488, 538
AgsI	TTSAA	8 cut(s)	135, 148, 411, 494, 537, 608, 869, 902
AjnI	CCWGG	2 cut(s)	376, 697
AluBI	AGCT	5 cut(s)	324, 422, 452, 641, 884
AluI	AGCT	5 cut(s)	324, 422, 452, 641, 884
Alw26I	GTCTC	2 cut(s)	157, 170
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	308, 350
ApoI	RAATTY	2 cut(s)	488, 538
AsuHPI	GGTGA	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	2 cut(s)	489, 876
BbvI	GCAGC	2 cut(s)	295, 337
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	2 cut(s)	378, 699
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	2 cut(s)	157, 170
BfaI	CTAG	3 cut(s)	234, 648, 836
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	309, 351
BlsI	GCNGC	2 cut(s)	310, 352
Bme1390I	CCNGG	2 cut(s)	378, 699
BmrFI	CCNGG	2 cut(s)	378, 699
BmsI	GCATC	1 cut(s)	632
BoxI	GACNNNNGTC	1 cut(s)	700
BpiI	GAAGAC	2 cut(s)	489, 876
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	303, 698
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse1I	ACTGG	1 cut(s)	745
BseBI	CCWGG	2 cut(s)	378, 699
BseDI	CCNNGG	2 cut(s)	303, 698
BseGI	GGATG	2 cut(s)	40, 478
BseMII	CTCAG	3 cut(s)	234, 311, 534
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	794
BseXI	GCAGC	2 cut(s)	295, 337
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	655
BsmAI	GTCTC	2 cut(s)	157, 170
BsnI	GGCC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	380, 937
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	3 cut(s)	235, 312, 535
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	303, 698
BssMI	GATC	2 cut(s)	380, 937
BssNAI	GTATAC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	303
Bst1107I	GTATAC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	378, 699
Bst4CI	ACNGT	4 cut(s)	64, 89, 253, 388
BstC8I	GCNNGC	2 cut(s)	313, 559
BstDEI	CTNAG	3 cut(s)	243, 320, 543
BstF5I	GGATG	2 cut(s)	40, 478
BstKTI	GATC	2 cut(s)	383, 940
BstMAI	GTCTC	2 cut(s)	157, 170
BstMBI	GATC	2 cut(s)	380, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 434
BstNI	CCWGG	2 cut(s)	378, 699
BstPAI	GACNNNNGTC	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	376, 697
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	295, 337
BstV2I	GAAGAC	2 cut(s)	489, 876
BstZ17I	GTATAC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	931
BtsCI	GGATG	2 cut(s)	40, 478
BtsIMutI	CAGTG	4 cut(s)	258, 516, 633, 738
Cac8I	GCNNGC	2 cut(s)	313, 559
CviAII	CATG	5 cut(s)	79, 269, 354, 754, 854
DdeI	CTNAG	3 cut(s)	243, 320, 543
DpnI	GATC	2 cut(s)	382, 939
DpnII	GATC	2 cut(s)	380, 937
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	730
EcoRII	CCWGG	2 cut(s)	376, 697
EcoRV	GATATC	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	5 cut(s)	82, 272, 357, 757, 857
FatI	CATG	5 cut(s)	78, 268, 353, 753, 853
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	2 cut(s)	248, 258
Fnu4HI	GCNGC	2 cut(s)	309, 351
FokI	GGATG	2 cut(s)	47, 485
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	2 cut(s)	309, 351
FspBI	CTAG	3 cut(s)	234, 648, 836
GluI	GCNGC	2 cut(s)	309, 351
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	1 cut(s)	655
Hin1II	CATG	5 cut(s)	82, 272, 357, 757, 857
HincII	GTYRAC	2 cut(s)	529, 691
HindII	GTYRAC	2 cut(s)	529, 691
HindIII	AAGCTT	2 cut(s)	639, 882
HinfI	GANTC	5 cut(s)	186, 284, 513, 759, 774
HpaII	CCGG	1 cut(s)	655
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	5 cut(s)	249, 259, 478, 529, 691
Hpy188I	TCNGA	3 cut(s)	321, 544, 790
Hpy188III	TCNNGA	1 cut(s)	288
Hpy8I	GTNNAC	5 cut(s)	249, 259, 478, 529, 691
HpyAV	CCTTC	5 cut(s)	47, 154, 326, 652, 896
HpyCH4III	ACNGT	4 cut(s)	64, 89, 253, 388
HpyCH4V	TGCA	8 cut(s)	108, 311, 353, 428, 593, 634, 722, 738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 434
HpyF3I	CTNAG	3 cut(s)	243, 320, 543
Hsp92II	CATG	5 cut(s)	82, 272, 357, 757, 857
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	2 cut(s)	380, 937
LmnI	GCTCC	2 cut(s)	434, 449
LpnPI	CCDG	9 cut(s)	273, 297, 324, 363, 390, 668, 684, 711, 726
Lsp1109I	GCAGC	2 cut(s)	295, 337
LweI	GCATC	1 cut(s)	632
MaeI	CTAG	3 cut(s)	234, 648, 836
MaeIII	GTNAC	4 cut(s)	271, 702, 847, 859
MalI	GATC	2 cut(s)	382, 939
MboI	GATC	2 cut(s)	380, 937
MboII	GAAGA	2 cut(s)	494, 881
MfeI	CAATTG	2 cut(s)	411, 675
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	7 cut(s)	109, 411, 459, 488, 538, 570, 675
MlyI	GAGTC	3 cut(s)	507, 768, 768
MseI	TTAA	1 cut(s)	876
MspI	CCGG	1 cut(s)	655
MspR9I	CCNGG	2 cut(s)	378, 699
MunI	CAATTG	2 cut(s)	411, 675
MvaI	CCWGG	2 cut(s)	378, 699
MwoI	GCNNNNNNNGC	2 cut(s)	321, 434
NdeII	GATC	2 cut(s)	380, 937
NlaIII	CATG	5 cut(s)	82, 272, 357, 757, 857
NmuCI	GTSAC	3 cut(s)	271, 702, 847
PceI	AGGCCT	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	186, 284
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	310, 352
PleI	GAGTC	3 cut(s)	507, 767, 768
PpsI	GAGTC	3 cut(s)	507, 767, 768
PshAI	GACNNNNGTC	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	376, 697
PspGI	CCWGG	2 cut(s)	376, 697
PstI	CTGCAG	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	524
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	2 cut(s)	309, 351
Sau3AI	GATC	2 cut(s)	380, 937
SchI	GAGTC	3 cut(s)	507, 768, 768
ScrFI	CCNGG	2 cut(s)	378, 699
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	632
SfcI	CTRYAG	1 cut(s)	309
Sse9I	AATT	7 cut(s)	109, 411, 459, 488, 538, 570, 675
SseBI	AGGCCT	1 cut(s)	315
SspMI	CTAG	3 cut(s)	234, 648, 836
StuI	AGGCCT	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	376, 697
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	64, 89, 253, 388
TasI	AATT	7 cut(s)	109, 411, 459, 488, 538, 570, 675
TfiI	GAWTC	2 cut(s)	186, 284
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TscAI	CASTG	4 cut(s)	258, 523, 633, 745
TseFI	GTSAC	3 cut(s)	271, 702, 847
TseI	GCWGC	2 cut(s)	308, 350
Tsp45I	GTSAC	3 cut(s)	271, 702, 847
TspDTI	ATGAA	2 cut(s)	67, 870
TspRI	CASTG	4 cut(s)	258, 523, 633, 745
Tth111I	GACNNNGTC	1 cut(s)	524
XapI	RAATTY	2 cut(s)	488, 538
XmiI	GTMKAC	2 cut(s)	248, 258
XspI	CTAG	3 cut(s)	234, 648, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.