Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Forward (+)

47873004 .. 47877237

Gene Structure 4234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0326800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCGGTTTCCGACGCTGCCCGTGACGTTATTCTCAGGACACTAGATAAGACTACTTCAAATTTAGAGATGGAATTAGCTACCGCAAGGGCAACACAAGAGTCTATACATAGTGGCTTCTTCATCAGTTGTCCTTCTTCATCAGCTCGGCCCGGTCTTATAGGTTCCAAGCGGTCGACTCTCTTTCACTCTTTCTCAGGCAAAGCTTGCATTTCTGAAAGATTGGAGGGCGCCAATGCATTGATATACCTGGACAATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAATGAAAAGGTTTGGTACTTCATATGGTATTGCTGGTAGAAGTGAGAAGGGGAGCAGAGGCAACGCCGCAACTGCAGCGCAGCTGCGCCTGGCATCTGCCGAGCCACCTGCTGAGCCATCTGCCGAGTATCACACAACACGTTTAACACATACCCGTTGTCTGTATGTTTCTCAGACAACTGTGTTCCACCGTTGTCTGAATTTTCATCAGACAGCGGCTCGCTCTACAACGGTGGCACTCCAAATCACACAACAGTTTTCTTCTGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

188

Amino Acids

20.37

Weight (kDa)

9.58

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	176
AciI	CCGC	4 cut(s)	84, 172, 360, 509
AcsI	RAATTY	2 cut(s)	61, 493
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	249, 381
AluBI	AGCT	4 cut(s)	80, 146, 206, 376
AluI	AGCT	4 cut(s)	80, 146, 206, 376
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	17, 368, 373, 376
ApoI	RAATTY	2 cut(s)	61, 493
AspLEI	GCGC	4 cut(s)	233, 275, 373, 381
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	230
BbvI	GCAGC	4 cut(s)	4, 363, 380, 385
BccI	CCATC	2 cut(s)	64, 418
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	2 cut(s)	251, 383
BcnI	CCSGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	2 cut(s)	234, 276
BfuAI	ACCTGC	1 cut(s)	409
BisI	GCNGC	6 cut(s)	18, 360, 369, 374, 377, 510
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	6 cut(s)	19, 361, 370, 375, 378, 511
Bme1390I	CCNGG	3 cut(s)	153, 251, 383
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	166, 232, 285
BmrFI	CCNGG	3 cut(s)	153, 251, 383
BmsI	GCATC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	2 cut(s)	251, 383
BseDI	CCNNGG	1 cut(s)	287
BseMII	CTCAG	4 cut(s)	49, 210, 396, 479
BseXI	GCAGC	4 cut(s)	4, 363, 380, 385
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	5, 153
BsnI	GGCC	1 cut(s)	151
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	4 cut(s)	84, 172, 360, 509
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	4 cut(s)	48, 209, 397, 478
BspLI	GGNNCC	3 cut(s)	166, 232, 285
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	287
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	251, 383
Bst4CI	ACNGT	4 cut(s)	475, 485, 526, 549
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	208, 514
BstDEI	CTNAG	4 cut(s)	35, 196, 405, 465
BstH2I	RGCGCY	2 cut(s)	234, 276
BstHHI	GCGC	4 cut(s)	233, 275, 373, 381
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 365, 368
BstNI	CCWGG	2 cut(s)	251, 383
BstSCI	CCNGG	3 cut(s)	151, 249, 381
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	4 cut(s)	4, 363, 380, 385
BsuRI	GGCC	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	208, 514
CfoI	GCGC	4 cut(s)	233, 275, 373, 381
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	309
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	4 cut(s)	35, 196, 405, 465
DinI	GGCGCC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	249, 381
EcoT14I	CCWWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	287
FauNDI	CATATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	6 cut(s)	18, 360, 369, 374, 377, 510
Fsp4HI	GCNGC	6 cut(s)	18, 360, 369, 374, 377, 510
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	4 cut(s)	232, 274, 372, 380
GluI	GCNGC	6 cut(s)	18, 360, 369, 374, 377, 510
HaeII	RGCGCY	2 cut(s)	234, 276
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	2 cut(s)	5, 153
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	4 cut(s)	233, 275, 373, 381
Hin1I	GRCGYC	1 cut(s)	231
Hin6I	GCGC	4 cut(s)	231, 273, 371, 379
HinP1I	GCGC	4 cut(s)	231, 273, 371, 379
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	2 cut(s)	101, 178
HpaII	CCGG	2 cut(s)	5, 153
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	6 cut(s)	13, 217, 468, 492, 504, 566
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	144, 334
HpyCH4III	ACNGT	4 cut(s)	475, 485, 526, 549
HpyCH4IV	ACGT	2 cut(s)	27, 433
HpyCH4V	TGCA	3 cut(s)	210, 239, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 365, 368
HpyF3I	CTNAG	4 cut(s)	35, 196, 405, 465
HpySE526I	ACGT	2 cut(s)	27, 433
Hsp92I	GRCGYC	1 cut(s)	231
HspAI	GCGC	4 cut(s)	231, 273, 371, 379
KasI	GGCGCC	1 cut(s)	230
LmnI	GCTCC	2 cut(s)	283, 345
Lsp1109I	GCAGC	4 cut(s)	4, 363, 380, 385
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	27, 433
MaeIII	GTNAC	1 cut(s)	23
MboII	GAAGA	3 cut(s)	112, 129, 546
MluCI	AATT	3 cut(s)	61, 74, 493
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	110, 172
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	220, 286, 344
Mph1103I	ATGCAT	1 cut(s)	241
MseI	TTAA	1 cut(s)	437
MspA1I	CMGCKG	2 cut(s)	376, 509
MspI	CCGG	2 cut(s)	5, 153
MspR9I	CCNGG	3 cut(s)	153, 251, 383
MvaI	CCWGG	2 cut(s)	251, 383
MwoI	GCNNNNNNNGC	3 cut(s)	207, 365, 368
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	316
NlaIV	GGNNCC	3 cut(s)	166, 232, 285
NmeAIII	GCCGAG	3 cut(s)	127, 418, 442
NmuCI	GTSAC	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	241
PaqCI	CACCTGC	1 cut(s)	409
PkrI	GCNGC	6 cut(s)	19, 361, 370, 375, 378, 511
PleI	GAGTC	2 cut(s)	109, 172
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	2 cut(s)	109, 172
Psp6I	CCWGG	2 cut(s)	249, 381
PspGI	CCWGG	2 cut(s)	249, 381
PspN4I	GGNNCC	3 cut(s)	166, 232, 285
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SalI	GTCGAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	6 cut(s)	18, 360, 369, 374, 377, 510
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	2 cut(s)	110, 172
ScrFI	CCNGG	3 cut(s)	153, 251, 383
SfaNI	GCATC	1 cut(s)	395
SfcI	CTRYAG	1 cut(s)	366
SfoI	GGCGCC	1 cut(s)	232
Sse9I	AATT	3 cut(s)	61, 74, 493
SsiI	CCGC	4 cut(s)	84, 172, 360, 509
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	151, 249, 381
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	4 cut(s)	475, 485, 526, 549
TaiI	ACGT	2 cut(s)	30, 436
TaqI	TCGA	1 cut(s)	176
TasI	AATT	3 cut(s)	61, 74, 493
TauI	GCSGC	2 cut(s)	362, 512
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	4 cut(s)	17, 368, 373, 376
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	5 cut(s)	112, 129, 303, 311, 488
XapI	RAATTY	2 cut(s)	61, 493
XmiI	GTMKAC	1 cut(s)	176
XspI	CTAG	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.