Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

44442140 .. 44446730

Gene Structure 4591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G543900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGATGATGAGAAATTGCCAAGTGAAAGCCGAGGGAAGCCTATTCGATGCAGAGCTGCTGTGAGTCGCAAACCAGGAGAGCCTCTAGTGATTGAAGAGATCATGGTGGCACCCCCGATGCCTCATGAAGTCCGTATTCGAATTATATGTACCTCTCTGTGTCAGACCGATCTCTCCTTCTGGAAAATGAAGGACTTCCCCGCAATTTTCCCAAGAATTCTTGGTCACGAAGCTATTGGGGTTGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTGACTGAGGGAGATACCGTCATCCCAACATTCAAGTCAGAATGTGGAGAGTGTGCAGATTGTAAATCGACAAGGAGCAACCTATGTGCAAAATTCCCCAGGCCCTCAATTTTTATGCCAAGATACGGGACGAGCAGATTCACAGACCTCAGTGGGGAAGTTCTATACCATTTCCTCTCCGTGTCTAGTTTTACTGAGTATACAGTGGTAGACAAAGCCCATATCACAAAAATTGACCCTGCAATACCACCAAGCAGTGCCTGCCTCCTGAGCTGTGGAGTATCGACCGGAGTTGGTGCTGCTTGGAGAACAGCAAAGGTGGAGAAGGGATCAACTGTTGCTATATTTGGGCTGGGTTCCATTGGATTAGCTGTCGCGGAGGGAGCAAGACTTTGTGGTGCAGCCAGAATTATTGGCGTGGATGTGAACCGAGACAAATTTGAAATTGGAAAAAAGTTTGGACTCACTGACTTTGTCGACCCTGCGAATTGCGAGAATAATTCTGTGAGCGAGCAGGTAATCAAGGAAATGACTGGCGGGGGTGCAGACTATTGCTTTGAATGTGTTGGGCTGATAACACTGATGCAAGAAGCTTACGCTTGCTGCCGAAAGGGTTGGGGAAAAACAGTTGTTTTAGGCATGGACGGACCGGGCTCACAGGTGACCCTTCCCTCTCTTGATATCATTTTTGGCAAAACCCTCACGGGATCCTTATTCGGAGGACTCAAACCTAAATCTGATATCGCTGTCCTCATCAATCGATACAAGGACAAGGAACTACAACTTGATGAGTTTGTGACACACGAGATCAGGTTTGAAGAAATCAACAAAGCTTTTGATTTACTCATTGAAGGGAAATGTCTCCGATGTGTAATCTATATGACCAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

389

Amino Acids

42.29

Weight (kDa)

5.5

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	3 cut(s)	473, 483, 750
AccII	CGCG	1 cut(s)	650
AciI	CCGC	3 cut(s)	201, 650, 810
AclWI	GGATC	3 cut(s)	610, 975, 988
AcsI	RAATTY	3 cut(s)	216, 365, 710
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	398, 427
AgsI	TTSAA	6 cut(s)	95, 307, 716, 833, 1091, 1124
AjnI	CCWGG	2 cut(s)	73, 371
AluBI	AGCT	6 cut(s)	56, 233, 546, 644, 866, 1106
AluI	AGCT	6 cut(s)	56, 233, 546, 644, 866, 1106
Alw26I	GTCTC	2 cut(s)	699, 1139
AlwI	GGATC	3 cut(s)	610, 975, 988
AlwNI	CAGNNNCTG	1 cut(s)	534
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	4 cut(s)	56, 572, 674, 876
ApoI	RAATTY	3 cut(s)	216, 365, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
Asp700I	GAANNNNTTC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	375, 920
AsuC2I	CCSGG	1 cut(s)	924
AsuHPI	GGTGA	2 cut(s)	286, 946
AsuII	TTCGAA	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	920
BamHI	GGATCC	1 cut(s)	980
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	929
BauI	CACGAG	1 cut(s)	1076
BbvI	GCAGC	4 cut(s)	43, 559, 686, 863
BciT130I	CCWGG	2 cut(s)	75, 373
BcnI	CCSGG	1 cut(s)	924
BcoDI	GTCTC	2 cut(s)	699, 1139
BfaI	CTAG	2 cut(s)	86, 459
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	4 cut(s)	57, 573, 675, 877
BlsI	GCNGC	4 cut(s)	58, 574, 676, 878
Bme1390I	CCNGG	3 cut(s)	75, 373, 924
Bme18I	GGWCC	1 cut(s)	920
BmgT120I	GGNCC	2 cut(s)	375, 920
BmiI	GGNNCC	3 cut(s)	111, 631, 982
BmrFI	CCNGG	3 cut(s)	75, 373, 924
BmsI	GCATC	3 cut(s)	38, 108, 846
Bpu10I	CCTNAGC	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	924
Bsa29I	ATCGAT	1 cut(s)	1033
BsaJI	CCNNGG	2 cut(s)	31, 371
BsaWI	WCCGGW	1 cut(s)	560
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 427
Bse1I	ACTGG	1 cut(s)	811
BseBI	CCWGG	2 cut(s)	75, 373
BseCI	ATCGAT	1 cut(s)	1033
BseDI	CCNNGG	2 cut(s)	31, 371
BseGI	GGATG	4 cut(s)	10, 268, 294, 700
BseLI	CCNNNNNNNGG	2 cut(s)	398, 427
BseMII	CTCAG	4 cut(s)	270, 436, 459, 533
BseNI	ACTGG	1 cut(s)	811
BseXI	GCAGC	4 cut(s)	43, 559, 686, 863
BseYI	CCCAGC	1 cut(s)	625
BsgI	GTGCAG	3 cut(s)	348, 693, 837
Bsh1236I	CGCG	1 cut(s)	650
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	376
BshNI	GGYRCC	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	1033
BsiEI	CGRYCG	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	561, 923
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	398, 427
BsmAI	GTCTC	2 cut(s)	699, 1139
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	376
Bsp119I	TTCGAA	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	929
Bsp143I	GATC	5 cut(s)	99, 169, 602, 980, 1080
BspACI	CCGC	3 cut(s)	201, 650, 810
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	4 cut(s)	271, 435, 460, 534
BspDI	ATCGAT	1 cut(s)	1033
BspFNI	CGCG	1 cut(s)	650
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	111, 631, 982
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	3 cut(s)	610, 975, 988
BspT104I	TTCGAA	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	811
BssECI	CCNNGG	2 cut(s)	31, 371
BssMI	GATC	5 cut(s)	99, 169, 602, 980, 1080
BssNAI	GTATAC	1 cut(s)	474
BssSI	CACGAG	1 cut(s)	1076
Bst1107I	GTATAC	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	1076
Bst2UI	CCWGG	2 cut(s)	75, 373
Bst4CI	ACNGT	4 cut(s)	292, 478, 610, 901
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	535, 785, 874
BstDEI	CTNAG	4 cut(s)	279, 422, 468, 542
BstEII	GGTNACC	1 cut(s)	934
BstF5I	GGATG	4 cut(s)	10, 268, 294, 700
BstFNI	CGCG	1 cut(s)	650
BstKTI	GATC	5 cut(s)	102, 172, 605, 983, 1083
BstMAI	GTCTC	2 cut(s)	699, 1139
BstMBI	GATC	5 cut(s)	99, 169, 602, 980, 1080
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	3 cut(s)	534, 543, 656
BstNI	CCWGG	2 cut(s)	75, 373
BstPI	GGTNACC	1 cut(s)	934
BstSCI	CCNGG	3 cut(s)	73, 371, 922
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	4 cut(s)	43, 559, 686, 863
BstX2I	RGATCY	1 cut(s)	980
BstYI	RGATCY	1 cut(s)	980
BstZ17I	GTATAC	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	1033
BsuRI	GGCC	1 cut(s)	376
BsuTUI	ATCGAT	1 cut(s)	1033
BtsCI	GGATG	4 cut(s)	10, 268, 294, 700
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	5 cut(s)	430, 483, 535, 738, 851
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	3 cut(s)	535, 785, 874
CaiI	CAGNNNCTG	1 cut(s)	534
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	375, 920
ClaI	ATCGAT	1 cut(s)	1033
CpoI	CGGWCCG	1 cut(s)	920
Csp6I	GTAC	1 cut(s)	150
CspI	CGGWCCG	1 cut(s)	920
CviAII	CATG	3 cut(s)	103, 125, 913
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	4 cut(s)	279, 422, 468, 542
DpnI	GATC	5 cut(s)	101, 171, 604, 982, 1082
DpnII	GATC	5 cut(s)	99, 169, 602, 980, 1080
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	929
Eco32I	GATATC	2 cut(s)	955, 1015
Eco47I	GGWCC	1 cut(s)	920
Eco91I	GGTNACC	1 cut(s)	934
EcoO109I	RGGNCCY	1 cut(s)	375
EcoO65I	GGTNACC	1 cut(s)	934
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	73, 371
EcoRV	GATATC	2 cut(s)	955, 1015
EcoT38I	GRGCYC	1 cut(s)	929
FaeI	CATG	3 cut(s)	106, 128, 916
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	3 cut(s)	102, 124, 912
FauI	CCCGC	2 cut(s)	208, 803
FblI	GTMKAC	3 cut(s)	473, 483, 750
Fnu4HI	GCNGC	4 cut(s)	57, 573, 675, 877
FokI	GGATG	4 cut(s)	17, 275, 281, 707
FriOI	GRGCYC	1 cut(s)	929
Fsp4HI	GCNGC	4 cut(s)	57, 573, 675, 877
FspBI	CTAG	2 cut(s)	86, 459
GluI	GCNGC	4 cut(s)	57, 573, 675, 877
GsaI	CCCAGC	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	2 cut(s)	561, 923
Hin1II	CATG	3 cut(s)	106, 128, 916
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	2 cut(s)	864, 1104
HinfI	GANTC	4 cut(s)	64, 411, 735, 996
HpaII	CCGG	2 cut(s)	561, 923
HphI	GGTGA	2 cut(s)	286, 946
Hpy166II	GTNNAC	4 cut(s)	474, 484, 700, 751
Hpy188I	TCNGA	5 cut(s)	165, 313, 992, 1012, 1139
Hpy188III	TCNNGA	5 cut(s)	125, 181, 227, 541, 950
Hpy8I	GTNNAC	4 cut(s)	474, 484, 700, 751
HpyAV	CCTTC	5 cut(s)	184, 187, 592, 950, 1118
HpyCH4III	ACNGT	4 cut(s)	292, 478, 610, 901
HpyCH4V	TGCA	7 cut(s)	51, 329, 362, 515, 674, 818, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	534, 543, 656
HpyF3I	CTNAG	4 cut(s)	279, 422, 468, 542
Hsp92II	CATG	3 cut(s)	106, 128, 916
Kzo9I	GATC	5 cut(s)	99, 169, 602, 980, 1080
LmnI	GCTCC	2 cut(s)	348, 656
Lsp1109I	GCAGC	4 cut(s)	43, 559, 686, 863
LweI	GCATC	3 cut(s)	38, 108, 846
MaeI	CTAG	2 cut(s)	86, 459
MaeIII	GTNAC	4 cut(s)	224, 274, 934, 1069
MalI	GATC	5 cut(s)	101, 171, 604, 982, 1082
MboI	GATC	5 cut(s)	99, 169, 602, 980, 1080
MboII	GAAGA	2 cut(s)	107, 1103
MflI	RGATCY	1 cut(s)	980
MhlI	GDGCHC	1 cut(s)	929
MlyI	GAGTC	3 cut(s)	73, 729, 990
MroXI	GAANNNNTTC	1 cut(s)	194
MspI	CCGG	2 cut(s)	561, 923
MspR9I	CCNGG	3 cut(s)	75, 373, 924
MvaI	CCWGG	2 cut(s)	75, 373
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	3 cut(s)	534, 543, 656
NciI	CCSGG	1 cut(s)	924
NdeII	GATC	5 cut(s)	99, 169, 602, 980, 1080
NlaIII	CATG	3 cut(s)	106, 128, 916
NlaIV	GGNNCC	3 cut(s)	111, 631, 982
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	4 cut(s)	224, 274, 934, 1069
NspV	TTCGAA	1 cut(s)	139
PagI	TCATGA	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	411
PflFI	GACNNNGTC	1 cut(s)	746
PkrI	GCNGC	4 cut(s)	58, 574, 676, 878
PleI	GAGTC	3 cut(s)	72, 729, 990
PpsI	GAGTC	3 cut(s)	72, 729, 990
Psp6I	CCWGG	2 cut(s)	73, 371
PspEI	GGTNACC	1 cut(s)	934
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	2 cut(s)	73, 371
PspN4I	GGNNCC	3 cut(s)	111, 631, 982
PspPI	GGNCC	2 cut(s)	375, 920
PstNI	CAGNNNCTG	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	980
PsyI	GACNNNGTC	1 cut(s)	746
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
Rsr2I	CGGWCCG	1 cut(s)	920
RsrII	CGGWCCG	1 cut(s)	920
SalI	GTCGAC	1 cut(s)	749
SatI	GCNGC	4 cut(s)	57, 573, 675, 877
Sau3AI	GATC	5 cut(s)	99, 169, 602, 980, 1080
Sau96I	GGNCC	2 cut(s)	375, 920
SchI	GAGTC	3 cut(s)	73, 729, 990
ScrFI	CCNGG	3 cut(s)	75, 373, 924
SduI	GDGCHC	1 cut(s)	929
SfaNI	GCATC	3 cut(s)	38, 108, 846
SfuI	TTCGAA	1 cut(s)	139
SinI	GGWCC	1 cut(s)	920
SsiI	CCGC	3 cut(s)	201, 650, 810
SspMI	CTAG	2 cut(s)	86, 459
StyD4I	CCNGG	3 cut(s)	73, 371, 922
TaaI	ACNGT	4 cut(s)	292, 478, 610, 901
TaqI	TCGA	6 cut(s)	46, 139, 341, 557, 750, 1033
TaqII	GACCGA	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	411
TscAI	CASTG	5 cut(s)	430, 483, 535, 745, 858
TseFI	GTSAC	4 cut(s)	224, 274, 934, 1069
TseI	GCWGC	4 cut(s)	56, 572, 674, 876
Tsp45I	GTSAC	4 cut(s)	224, 274, 934, 1069
TspDTI	ATGAA	2 cut(s)	141, 203
TspGWI	ACGGA	3 cut(s)	122, 442, 933
TspRI	CASTG	5 cut(s)	430, 483, 535, 745, 858
Tth111I	GACNNNGTC	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	3 cut(s)	216, 365, 710
XmiI	GTMKAC	3 cut(s)	473, 483, 750
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	2 cut(s)	86, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.