Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019860.1

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Forward (+)

614 .. 2337

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019860.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggctgagaaattgtccggtggaagtagagggaagcctatacgatgcagagctgcggtgtgtcggaagccaagcgagccgctagtgatcgaagaaatcatggtggaaccgccgatgcctcatgaagtccgcgttcgaattatttatacttctctgtgccacagtgatctcactttctggaaaatgaaggactttcctgcaattttccctagaattctcggtcacgaagctatcggggttgtggagagtgttggggaggatgtcaatgaggtaagtgaaggagatactgtcataccaacattcatggcagactgtggagaatgtggagattgcaattcagcaaagagcaacctatgttcaaaactacccttcaaggtctcaccttttatgccaagatatgagacaagcagattcacagacctcaacggcgaggctctataccatttcctatctgtgtctagttttactgagtatacagtggtagacatagcccatgtcacaaagattgattctggaatacctctaaccaaggctgcaggcctcctgagctgtggagtatcaacaggtagacttgaaatctgtattgttttctggtacttttcttcttttgatgtgatggtttgcaaaatttatgtttcaattgtgtttaacaaactccatccttttggccttttgggattgttaagctacattatcatatccaaccgaaagttagaataccttaatcacgaaatctgtattgttttctggtactttcttgttttgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

256

Amino Acids

28.73

Weight (kDa)

5.99

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	473, 483, 568
AccII	CGCG	1 cut(s)	132
AciI	CCGC	4 cut(s)	56, 80, 110, 130
AcsI	RAATTY	2 cut(s)	213, 627
AfaI	GTAC	2 cut(s)	596, 752
AgsI	TTSAA	4 cut(s)	360, 373, 575, 639
AluBI	AGCT	4 cut(s)	53, 230, 549, 687
AluI	AGCT	4 cut(s)	53, 230, 549, 687
Alw26I	GTCTC	2 cut(s)	382, 395
AoxI	GGCC	2 cut(s)	538, 667
ApeKI	GCWGC	2 cut(s)	53, 533
ApoI	RAATTY	2 cut(s)	213, 627
AsuHPI	GGTGA	1 cut(s)	372
AsuII	TTCGAA	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	40, 520
BccI	CCATC	2 cut(s)	610, 666
BceAI	ACGGC	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	382, 395
BfaI	CTAG	3 cut(s)	83, 210, 459
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	3 cut(s)	54, 80, 534
BlsI	GCNGC	3 cut(s)	55, 81, 535
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	2 cut(s)	35, 105
Bpu10I	CCTNAGC	1 cut(s)	545
Bpu14I	TTCGAA	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	265, 658
BseMII	CTCAG	2 cut(s)	459, 536
BseXI	GCAGC	2 cut(s)	40, 520
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	540, 669
BsiSI	CCGG	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	382, 395
BsnI	GGCC	2 cut(s)	540, 669
Bso31I	GGTCTC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	87, 166
BspACI	CCGC	4 cut(s)	56, 80, 110, 130
BspANI	GGCC	2 cut(s)	540, 669
BspCNI	CTCAG	2 cut(s)	460, 537
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	538
BspT104I	TTCGAA	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	2 cut(s)	87, 166
BssNAI	GTATAC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	528
Bst1107I	GTATAC	1 cut(s)	474
Bst4CI	ACNGT	4 cut(s)	164, 289, 314, 478
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	77, 538
BstDEI	CTNAG	3 cut(s)	6, 468, 545
BstF5I	GGATG	2 cut(s)	265, 658
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	90, 169
BstMAI	GTCTC	2 cut(s)	382, 395
BstMBI	GATC	2 cut(s)	87, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 546
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	40, 520
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstZ17I	GTATAC	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	540, 669
BtsCI	GGATG	2 cut(s)	265, 658
BtsIMutI	CAGTG	2 cut(s)	169, 483
Cac8I	GCNNGC	2 cut(s)	77, 538
CciI	TCATGA	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	595, 751
CviAII	CATG	4 cut(s)	100, 122, 304, 494
CviQI	GTAC	2 cut(s)	595, 751
DdeI	CTNAG	3 cut(s)	6, 468, 545
DpnI	GATC	2 cut(s)	89, 168
DpnII	GATC	2 cut(s)	87, 166
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	4 cut(s)	103, 125, 307, 497
FatI	CATG	4 cut(s)	99, 121, 303, 493
FblI	GTMKAC	3 cut(s)	473, 483, 568
Fnu4HI	GCNGC	3 cut(s)	54, 80, 534
FokI	GGATG	2 cut(s)	272, 645
Fsp4HI	GCNGC	3 cut(s)	54, 80, 534
FspBI	CTAG	3 cut(s)	83, 210, 459
GluI	GCNGC	3 cut(s)	54, 80, 534
HaeIII	GGCC	2 cut(s)	540, 669
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	4 cut(s)	103, 125, 307, 497
HinfI	GANTC	2 cut(s)	411, 509
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	3 cut(s)	474, 484, 569
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	6 cut(s)	122, 178, 224, 513, 544, 728
Hpy8I	GTNNAC	3 cut(s)	474, 484, 569
HpyAV	CCTTC	3 cut(s)	181, 272, 379
HpyCH4III	ACNGT	4 cut(s)	164, 289, 314, 478
HpyCH4V	TGCA	5 cut(s)	48, 200, 333, 536, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 546
HpyF3I	CTNAG	3 cut(s)	6, 468, 545
Hsp92II	CATG	4 cut(s)	103, 125, 307, 497
Kzo9I	GATC	2 cut(s)	87, 166
LpnPI	CCDG	9 cut(s)	31, 163, 210, 498, 522, 549, 557, 577, 733
Lsp1109I	GCAGC	2 cut(s)	40, 520
LweI	GCATC	2 cut(s)	35, 105
MaeI	CTAG	3 cut(s)	83, 210, 459
MaeIII	GTNAC	2 cut(s)	221, 496
MalI	GATC	2 cut(s)	89, 168
MboI	GATC	2 cut(s)	87, 166
MboII	GAAGA	2 cut(s)	104, 594
MfeI	CAATTG	1 cut(s)	639
MluCI	AATT	7 cut(s)	11, 138, 201, 213, 334, 627, 639
MmeI	TCCRAC	2 cut(s)	44, 726
MnlI	CCTC	8 cut(s)	23, 129, 250, 262, 424, 431, 531, 551
MseI	TTAA	3 cut(s)	648, 683, 723
MspI	CCGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	76, 546
NdeII	GATC	2 cut(s)	87, 166
NlaIII	CATG	4 cut(s)	103, 125, 307, 497
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	221, 496
NspV	TTCGAA	1 cut(s)	136
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	411, 509
PkrI	GCNGC	3 cut(s)	55, 81, 535
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	538
RsaI	GTAC	2 cut(s)	596, 752
RsaNI	GTAC	2 cut(s)	595, 751
SaqAI	TTAA	3 cut(s)	648, 683, 723
SatI	GCNGC	3 cut(s)	54, 80, 534
Sau3AI	GATC	2 cut(s)	87, 166
SfaNI	GCATC	2 cut(s)	35, 105
SfcI	CTRYAG	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	136
Sse9I	AATT	7 cut(s)	11, 138, 201, 213, 334, 627, 639
SseBI	AGGCCT	1 cut(s)	540
SsiI	CCGC	4 cut(s)	56, 80, 110, 130
SspMI	CTAG	3 cut(s)	83, 210, 459
StuI	AGGCCT	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	4 cut(s)	164, 289, 314, 478
TaqI	TCGA	2 cut(s)	90, 136
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	7 cut(s)	11, 138, 201, 213, 334, 627, 639
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	411, 509
Tru1I	TTAA	3 cut(s)	648, 683, 723
Tru9I	TTAA	3 cut(s)	648, 683, 723
TscAI	CASTG	2 cut(s)	169, 483
TseFI	GTSAC	2 cut(s)	221, 496
TseI	GCWGC	2 cut(s)	53, 533
Tsp45I	GTSAC	2 cut(s)	221, 496
TspDTI	ATGAA	3 cut(s)	138, 200, 292
TspRI	CASTG	2 cut(s)	169, 483
XapI	RAATTY	2 cut(s)	213, 627
XmiI	GTMKAC	3 cut(s)	473, 483, 568
XspI	CTAG	3 cut(s)	83, 210, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.