Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Forward (+)

62379804 .. 62399808

Gene Structure 20005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G038180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTGAGAAATTGTCCGGTGGAAGTAGAGGGAAGCCTATACGATGCAGAGCTGCGGTGTGTCGGAAGCCAAGCGAGCCGCTAGTGATCGAAGAAATCATGGTGGAACCGCCGATGCCTCATGAAGTCCGCGTTCGAATTATTTATACTTCTCTGTGCCACAGTGATCTCACTTTCTGGAAAATGAAGGACTTTCCTGCAATTTTCCCTAGAATTCTCGGTCACGAAGCTATCGGGGTTGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTAAGTGAAGGAGATACTGTCATACCAACATTCATGGCAGACTGTGGAGAATGTGGAGATTGCAATTCAGCAAAGAGCAACCTATGTTCAAAACTACCCTTCAAGGTCTCACCTTTTATGCCAAGATATGAGACAAGCAGATTCACAGACCTCAACGGCGAGGCTCTATACCATTTCCTATCTGTGTCTAGTTTTACTGAGTATACAGTGGTAGACATAGCCCATGTCACAAAGATTGATTCTGGAATACCTCTAACCAAGGCTGCAGGCCTTCTGAGCTGTGGAGTATCAACAGGGGTTGGTGCTGCATGGAGAACGGCAAATGTAGAGCCAGGATCAACTGTGGCTATATTCGGGCTCGGTTCAATTGGATTAGCTGTTGCAGAGGGAGCAAGACTTTGTGGAGCTACAAGAATTATCGGCGTGGATGTGAACGAAGACAAATTTGAAGTTGGGAAAAAGTTTGGACTCACTGACTTCGTCAAAGCCGCAAATTCTGAGAATAAATCTGCGAGCGAGGTGATAATTGAGATGACTGACGGGGGTGCAGATTATTGCTTTGAATGTGTGGGAATGGCATCAGTGGTGCAAGAAGCTTATGCTTGTTGCCGGAAGGGTTGGGGAAAAACAATCATGTTAGGAGTGGACAAGCCAGGGTCACAGGTGAGCATTTCTTCTCGTGATATCCTTACTACTGGCAAATCCCTCATTGGAGTCTTATTTGGAGGGCTCAAACCCAAATCGGATATTCCTATTCTCCTCAATCGCTACATCAACAAGGAACTACAACTGGATGAGTTTGTAACACATGAAGTGCCGTTTGACGACATTAACAAAGCTTTTGATTTACTCATTGAAGGGAAATGTTTGCGATGTGTAATCTGTATGAATGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

389

Amino Acids

42.03

Weight (kDa)

5.27

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	40 - 170	2.1e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	213 - 343	7.6e-25	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	473, 483
AccII	CGCG	1 cut(s)	132
AciI	CCGC	5 cut(s)	56, 80, 110, 130, 759
AclWI	GGATC	1 cut(s)	613
AcsI	RAATTY	3 cut(s)	213, 713, 763
AgsI	TTSAA	6 cut(s)	360, 373, 636, 719, 833, 1127
AjnI	CCWGG	2 cut(s)	601, 922
AluBI	AGCT	7 cut(s)	53, 230, 549, 647, 677, 866, 1109
AluI	AGCT	7 cut(s)	53, 230, 549, 647, 677, 866, 1109
Alw26I	GTCTC	2 cut(s)	382, 395
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	3 cut(s)	53, 533, 575
ApoI	RAATTY	3 cut(s)	213, 713, 763
AsuHPI	GGTGA	3 cut(s)	372, 802, 946
AsuII	TTCGAA	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	630, 1002
BauI	CACGAG	1 cut(s)	948
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	40, 520, 562
BceAI	ACGGC	3 cut(s)	442, 603, 1072
BciT130I	CCWGG	2 cut(s)	603, 924
BclI	TGATCA	1 cut(s)	1162
BcoDI	GTCTC	2 cut(s)	382, 395
BfaI	CTAG	3 cut(s)	83, 210, 459
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	5 cut(s)	54, 80, 534, 576, 759
BlsI	GCNGC	5 cut(s)	55, 81, 535, 577, 760
Bme1390I	CCNGG	2 cut(s)	603, 924
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	603, 924
BmsI	GCATC	3 cut(s)	35, 105, 857
BpiI	GAAGAC	1 cut(s)	714
Bpu14I	TTCGAA	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	528, 923
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse1I	ACTGG	2 cut(s)	970, 1065
BseBI	CCWGG	2 cut(s)	603, 924
BseDI	CCNNGG	2 cut(s)	528, 923
BseGI	GGATG	3 cut(s)	265, 703, 1069
BseMII	CTCAG	3 cut(s)	459, 536, 759
BseNI	ACTGG	2 cut(s)	970, 1065
BseRI	GAGGAG	1 cut(s)	1019
BseXI	GCAGC	3 cut(s)	40, 520, 562
BsgI	GTGCAG	1 cut(s)	837
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	540
BsiSI	CCGG	2 cut(s)	18, 880
BsmAI	GTCTC	2 cut(s)	382, 395
BsnI	GGCC	1 cut(s)	540
Bso31I	GGTCTC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	630, 1002
Bsp143I	GATC	4 cut(s)	87, 166, 605, 1162
BspACI	CCGC	5 cut(s)	56, 80, 110, 130, 759
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	3 cut(s)	460, 537, 760
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	1 cut(s)	613
BspT104I	TTCGAA	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	970, 1065
BssECI	CCNNGG	2 cut(s)	528, 923
BssMI	GATC	4 cut(s)	87, 166, 605, 1162
BssNAI	GTATAC	1 cut(s)	474
BssSI	CACGAG	1 cut(s)	948
BssT1I	CCWWGG	1 cut(s)	528
Bst1107I	GTATAC	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	948
Bst2UI	CCWGG	2 cut(s)	603, 924
Bst4CI	ACNGT	5 cut(s)	164, 289, 314, 478, 613
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	77, 538, 784
BstDEI	CTNAG	4 cut(s)	6, 468, 545, 768
BstF5I	GGATG	3 cut(s)	265, 703, 1069
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	90, 169, 608, 1165
BstMAI	GTCTC	2 cut(s)	382, 395
BstMBI	GATC	4 cut(s)	87, 166, 605, 1162
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 546, 659
BstNI	CCWGG	2 cut(s)	603, 924
BstSCI	CCNGG	2 cut(s)	601, 922
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	40, 520, 562
BstV2I	GAAGAC	1 cut(s)	714
BstZ17I	GTATAC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	1156
BtsCI	GGATG	3 cut(s)	265, 703, 1069
BtsIMutI	CAGTG	4 cut(s)	169, 483, 741, 858
Cac8I	GCNNGC	3 cut(s)	77, 538, 784
CciI	TCATGA	1 cut(s)	121
CviAII	CATG	7 cut(s)	100, 122, 304, 494, 579, 904, 1079
DdeI	CTNAG	4 cut(s)	6, 468, 545, 768
DpnI	GATC	4 cut(s)	89, 168, 607, 1164
DpnII	GATC	4 cut(s)	87, 166, 605, 1162
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	540
Eco24I	GRGCYC	2 cut(s)	630, 1002
Eco31I	GGTCTC	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	955
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	601, 922
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	630, 1002
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	7 cut(s)	103, 125, 307, 497, 582, 907, 1082
FatI	CATG	7 cut(s)	99, 121, 303, 493, 578, 903, 1078
FbaI	TGATCA	1 cut(s)	1162
FblI	GTMKAC	2 cut(s)	473, 483
Fnu4HI	GCNGC	5 cut(s)	54, 80, 534, 576, 759
FokI	GGATG	3 cut(s)	272, 710, 1076
FriOI	GRGCYC	2 cut(s)	630, 1002
Fsp4HI	GCNGC	5 cut(s)	54, 80, 534, 576, 759
FspBI	CTAG	3 cut(s)	83, 210, 459
GluI	GCNGC	5 cut(s)	54, 80, 534, 576, 759
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	2 cut(s)	18, 880
Hin1II	CATG	7 cut(s)	103, 125, 307, 497, 582, 907, 1082
HindIII	AAGCTT	2 cut(s)	864, 1107
HinfI	GANTC	4 cut(s)	411, 509, 738, 984
HpaII	CCGG	2 cut(s)	18, 880
HphI	GGTGA	3 cut(s)	372, 802, 946
Hpy166II	GTNNAC	4 cut(s)	474, 484, 703, 916
Hpy188I	TCNGA	4 cut(s)	66, 546, 769, 1015
Hpy188III	TCNNGA	5 cut(s)	122, 178, 224, 513, 950
Hpy8I	GTNNAC	4 cut(s)	474, 484, 703, 916
HpyAV	CCTTC	6 cut(s)	181, 272, 379, 551, 877, 1121
HpyCH4III	ACNGT	5 cut(s)	164, 289, 314, 478, 613
HpyCH4V	TGCA	8 cut(s)	48, 200, 333, 536, 578, 653, 818, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 546, 659
HpyF3I	CTNAG	4 cut(s)	6, 468, 545, 768
Hsp92II	CATG	7 cut(s)	103, 125, 307, 497, 582, 907, 1082
Ksp22I	TGATCA	1 cut(s)	1162
Kzo9I	GATC	4 cut(s)	87, 166, 605, 1162
LmnI	GCTCC	2 cut(s)	659, 674
Lsp1109I	GCAGC	3 cut(s)	40, 520, 562
LweI	GCATC	3 cut(s)	35, 105, 857
MaeI	CTAG	3 cut(s)	83, 210, 459
MaeIII	GTNAC	4 cut(s)	221, 496, 927, 1072
MalI	GATC	4 cut(s)	89, 168, 607, 1164
MboI	GATC	4 cut(s)	87, 166, 605, 1162
MboII	GAAGA	3 cut(s)	104, 719, 936
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	2 cut(s)	630, 1002
MlyI	GAGTC	2 cut(s)	732, 993
MmeI	TCCRAC	1 cut(s)	44
MseI	TTAA	1 cut(s)	1101
MspI	CCGG	2 cut(s)	18, 880
MspR9I	CCNGG	2 cut(s)	603, 924
MunI	CAATTG	1 cut(s)	636
MvaI	CCWGG	2 cut(s)	603, 924
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	76, 546, 659
NdeII	GATC	4 cut(s)	87, 166, 605, 1162
NlaIII	CATG	7 cut(s)	103, 125, 307, 497, 582, 907, 1082
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	3 cut(s)	221, 496, 927
NspV	TTCGAA	1 cut(s)	136
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	411, 509
PflFI	GACNNNGTC	1 cut(s)	749
PkrI	GCNGC	5 cut(s)	55, 81, 535, 577, 760
PleI	GAGTC	2 cut(s)	732, 992
PpsI	GAGTC	2 cut(s)	732, 992
Psp6I	CCWGG	2 cut(s)	601, 922
PspGI	CCWGG	2 cut(s)	601, 922
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	749
SaqAI	TTAA	1 cut(s)	1101
SatI	GCNGC	5 cut(s)	54, 80, 534, 576, 759
Sau3AI	GATC	4 cut(s)	87, 166, 605, 1162
SchI	GAGTC	2 cut(s)	732, 993
ScrFI	CCNGG	2 cut(s)	603, 924
SduI	GDGCHC	2 cut(s)	630, 1002
SfaNI	GCATC	3 cut(s)	35, 105, 857
SfcI	CTRYAG	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	136
SseBI	AGGCCT	1 cut(s)	540
SsiI	CCGC	5 cut(s)	56, 80, 110, 130, 759
SspMI	CTAG	3 cut(s)	83, 210, 459
StuI	AGGCCT	1 cut(s)	540
StyD4I	CCNGG	2 cut(s)	601, 922
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	164, 289, 314, 478, 613
TaqI	TCGA	2 cut(s)	90, 136
TaqII	GACCGA	1 cut(s)	209
TauI	GCSGC	2 cut(s)	82, 761
TfiI	GAWTC	2 cut(s)	411, 509
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TscAI	CASTG	4 cut(s)	169, 483, 748, 858
TseFI	GTSAC	3 cut(s)	221, 496, 927
TseI	GCWGC	3 cut(s)	53, 533, 575
Tsp45I	GTSAC	3 cut(s)	221, 496, 927
TspDTI	ATGAA	4 cut(s)	138, 200, 292, 1095
TspRI	CASTG	4 cut(s)	169, 483, 748, 858
Tth111I	GACNNNGTC	1 cut(s)	749
XapI	RAATTY	3 cut(s)	213, 713, 763
XmiI	GTMKAC	2 cut(s)	473, 483
XspI	CTAG	3 cut(s)	83, 210, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.