Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

6082279 .. 6190974

Gene Structure 108696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCGCCATGGATGAGAAGTTGTCAAGTGGAAACAGAGGGAAGCCTATTCGATGCAGAGTCTTCCCTAGAATTCTCGGTCACGAAGCTATCGGGGTTGTGGAGAGTGTTGGGGAGGATGTGACTGAGGTAGCCGAAGGAGATACTGTCATCCCCACATTGATTTCGGATTGTGGAGAATGTGTAGATTGCAGATCAACAAAGAGCAATCTTTGTTCAAAACTTCCCTTCAAGATCTCACCTTTTATGCCAAGACATGAGACAAGCAGATTCACAGACCTCAATGGCGAGGTTATACACCATTTTGTATCTGTATCTAGTTTTAGCGAGTATACAGTGGTGGACATAGCCCATCTCACAAAGATTGACTCTGCAATACCTTTAACCAAGGCTGCAGGCCTTCTAGGTTGTGGAGTATCAACAGGGGTTGGTGCTGCTTGGAGAACAGCAAATGTGGAGCCGGGATCAACTGTGGCTATATTTGGGCTTGGTTCAATTGGATTGGCTGTGGCAGAAGGTGCAAGACTGTGTGGAGCTACTAGAATTATCGGGGTGGATGTTAACCAAGACAAATTTGAAATTGGAAAAAAGTTTGGAGTCACTGACTTCATCAACCCTGCAAATTGTGAGAATAAATCTGTGACAGAGGTGATGATTGAGATGACTGATGGGGGTGCAGATTATTGCTTTGAATGTGTTGGAATTGCATCACTGGTGCAACAAGCTTATGCTTGCTGCCGGAAGGGTTGGGGAAAAACAATTGTATTAGGTGTGGACCAGCCAGGGTCACAGTTGACCCTTCCCTCATATGATGTGCTTCATAAGGGTAAAACCCTCATGGGATCGATCTCATCAGCCTTAAGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

290

Amino Acids

30.6

Weight (kDa)

5.72

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	20 - 123	9.7e-14	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	166 - 284	4.8e-26	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	2 cut(s)	472, 850
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	72, 572
AflII	CTTAAG	1 cut(s)	859
AgsI	TTSAA	5 cut(s)	219, 232, 495, 578, 692
AjnI	CCWGG	1 cut(s)	781
AluBI	AGCT	3 cut(s)	89, 536, 725
AluI	AGCT	3 cut(s)	89, 536, 725
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	472, 850
AoxI	GGCC	2 cut(s)	3, 397
ApeKI	GCWGC	3 cut(s)	392, 434, 735
ApoI	RAATTY	2 cut(s)	72, 572
AspS9I	GGNCC	1 cut(s)	775
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	231, 661
AvaII	GGWCC	1 cut(s)	775
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	379, 421, 722
BccI	CCATC	2 cut(s)	360, 662
BciT130I	CCWGG	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	5 cut(s)	69, 318, 404, 540, 868
BfmI	CTRYAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	859
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	4 cut(s)	6, 393, 435, 736
BlsI	GCNGC	4 cut(s)	7, 394, 436, 737
Bme1390I	CCNGG	2 cut(s)	462, 783
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	1 cut(s)	775
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	462, 783
BmsI	GCATC	3 cut(s)	44, 716, 854
BpiI	GAAGAC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	845
BsaJI	CCNNGG	3 cut(s)	9, 387, 782
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 168, 198
Bse1I	ACTGG	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	783
BseCI	ATCGAT	1 cut(s)	845
BseDI	CCNNGG	3 cut(s)	9, 387, 782
BseGI	GGATG	4 cut(s)	19, 124, 150, 562
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	717
BseXI	GCAGC	3 cut(s)	379, 421, 722
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	5, 399
BshVI	ATCGAT	1 cut(s)	845
BsiSI	CCGG	2 cut(s)	461, 739
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	5, 399
Bsp143I	GATC	5 cut(s)	194, 234, 464, 842, 846
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	5, 399
BspCNI	CTCAG	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	845
BspLI	GGNNCC	1 cut(s)	459
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	472, 850
BspTI	CTTAAG	1 cut(s)	859
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	3 cut(s)	9, 387, 782
BssMI	GATC	5 cut(s)	194, 234, 464, 842, 846
BssNAI	GTATAC	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	9, 387
Bst1107I	GTATAC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	5 cut(s)	148, 337, 472, 528, 792
BstAFI	CTTAAG	1 cut(s)	859
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	397, 733
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	19, 124, 150, 562
BstKTI	GATC	5 cut(s)	197, 237, 467, 845, 849
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	5 cut(s)	194, 234, 464, 842, 846
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	1 cut(s)	783
BstSCI	CCNGG	2 cut(s)	460, 781
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	379, 421, 722
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BstZ17I	GTATAC	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	845
BsuRI	GGCC	2 cut(s)	5, 399
BsuTUI	ATCGAT	1 cut(s)	845
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	19, 124, 150, 562
BtsIMutI	CAGTG	3 cut(s)	342, 600, 710
Cac8I	GCNNGC	2 cut(s)	397, 733
Cfr13I	GGNCC	1 cut(s)	775
ClaI	ATCGAT	1 cut(s)	845
CviAII	CATG	3 cut(s)	10, 257, 838
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	5 cut(s)	196, 236, 466, 844, 848
DpnII	GATC	5 cut(s)	194, 234, 464, 842, 846
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	9, 387
Eco147I	AGGCCT	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	775
EcoRI	GAATTC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	781
EcoT14I	CCWWGG	2 cut(s)	9, 387
ErhI	CCWWGG	2 cut(s)	9, 387
FaeI	CATG	3 cut(s)	13, 260, 841
FatI	CATG	3 cut(s)	9, 256, 837
FauNDI	CATATG	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	4 cut(s)	6, 393, 435, 736
FokI	GGATG	4 cut(s)	26, 131, 137, 569
Fsp4HI	GCNGC	4 cut(s)	6, 393, 435, 736
FspBI	CTAG	5 cut(s)	69, 318, 404, 540, 868
GluI	GCNGC	4 cut(s)	6, 393, 435, 736
HaeIII	GGCC	2 cut(s)	5, 399
HapII	CCGG	2 cut(s)	461, 739
Hin1II	CATG	3 cut(s)	13, 260, 841
HincII	GTYRAC	2 cut(s)	562, 795
HindII	GTYRAC	2 cut(s)	562, 795
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	4 cut(s)	60, 270, 368, 597
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	2 cut(s)	461, 739
HphI	GGTGA	2 cut(s)	231, 661
Hpy166II	GTNNAC	5 cut(s)	333, 343, 562, 775, 795
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	83, 232
Hpy8I	GTNNAC	5 cut(s)	333, 343, 562, 775, 795
HpyAV	CCTTC	6 cut(s)	131, 238, 410, 509, 736, 809
HpyCH4III	ACNGT	5 cut(s)	148, 337, 472, 528, 792
HpyCH4V	TGCA	9 cut(s)	57, 192, 374, 395, 521, 620, 677, 707, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	13, 260, 841
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	5 cut(s)	194, 234, 464, 842, 846
LmnI	GCTCC	2 cut(s)	457, 533
LpnPI	CCDG	9 cut(s)	381, 408, 474, 630, 698, 752, 768, 791, 795
Lsp1109I	GCAGC	3 cut(s)	379, 421, 722
LweI	GCATC	3 cut(s)	44, 716, 854
MaeI	CTAG	5 cut(s)	69, 318, 404, 540, 868
MaeIII	GTNAC	5 cut(s)	80, 121, 598, 640, 786
MalI	GATC	5 cut(s)	196, 236, 466, 844, 848
MboI	GATC	5 cut(s)	194, 234, 464, 842, 846
MboII	GAAGA	1 cut(s)	55
MfeI	CAATTG	2 cut(s)	495, 759
MflI	RGATCY	1 cut(s)	234
MluCI	AATT	8 cut(s)	72, 495, 543, 572, 579, 622, 702, 759
MlyI	GAGTC	3 cut(s)	69, 362, 606
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	8 cut(s)	32, 109, 121, 283, 290, 640, 814, 845
MseI	TTAA	3 cut(s)	383, 561, 860
MspCI	CTTAAG	1 cut(s)	859
MspI	CCGG	2 cut(s)	461, 739
MspR9I	CCNGG	2 cut(s)	462, 783
MunI	CAATTG	2 cut(s)	495, 759
MvaI	CCWGG	1 cut(s)	783
MwoI	GCNNNNNNNGC	1 cut(s)	518
NciI	CCSGG	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	5 cut(s)	194, 234, 464, 842, 846
NlaIII	CATG	3 cut(s)	13, 260, 841
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	5 cut(s)	80, 121, 598, 640, 786
PceI	AGGCCT	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	7, 394, 436, 737
PleI	GAGTC	3 cut(s)	68, 362, 605
PpsI	GAGTC	3 cut(s)	68, 362, 605
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	775
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	383, 561, 860
SatI	GCNGC	4 cut(s)	6, 393, 435, 736
Sau3AI	GATC	5 cut(s)	194, 234, 464, 842, 846
Sau96I	GGNCC	1 cut(s)	775
SchI	GAGTC	3 cut(s)	69, 362, 606
ScrFI	CCNGG	2 cut(s)	462, 783
SfaNI	GCATC	3 cut(s)	44, 716, 854
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	775
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
Sse9I	AATT	8 cut(s)	72, 495, 543, 572, 579, 622, 702, 759
SseBI	AGGCCT	1 cut(s)	399
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	5 cut(s)	69, 318, 404, 540, 868
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	460, 781
StyI	CCWWGG	2 cut(s)	9, 387
TaaI	ACNGT	5 cut(s)	148, 337, 472, 528, 792
TaqI	TCGA	2 cut(s)	52, 845
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	8 cut(s)	72, 495, 543, 572, 579, 622, 702, 759
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	383, 561, 860
Tru9I	TTAA	3 cut(s)	383, 561, 860
TscAI	CASTG	3 cut(s)	342, 607, 717
TseFI	GTSAC	5 cut(s)	80, 121, 598, 640, 786
TseI	GCWGC	3 cut(s)	392, 434, 735
Tsp45I	GTSAC	5 cut(s)	80, 121, 598, 640, 786
TspDTI	ATGAA	2 cut(s)	598, 809
TspRI	CASTG	3 cut(s)	342, 607, 717
Vha464I	CTTAAG	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	2 cut(s)	72, 572
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	5 cut(s)	69, 318, 404, 540, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.