Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

27390673 .. 27393401

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCTGCCATGGATGAGAAGCTGTCAAGTGGAAACAGAGGGAACCCTATTCGATGCAGAGCTGCTGTCTCTCGCAAGCCAGGTGAGCCACTTGTGATAGAAGAGATCATAGTGGCGCCCCCAATGCCCCATGAAGTTCGCGTTCGGATTGTCTATACTTCTTTGTGTCACAGTGATATCACTTTCTGGAAAATGAAGGACTTTCCTGCAGTTTTCCCTAGGATTCTCGGTCATGAAGCTATCGGGGTTGTGGAGAGTGTTGGGGAGGAAGTGACTGAGGTAGCAGAAGGAGATACTGTGATCCCAACATTGATTTCGGAATGTGGAGAATGTGTTGATTGCAGATCAACAAAGAGCAACCTTTGTTCAAAACTCCCCTTCAAGCAGATCTCACCTTTTATGCCCAGACACGAGACAAGCAGATTCACAGACCTCAATGGTGAGGTTATATACCATTTTCTATCTGTGTCGAGTTTTAGCGAGTATACAGTGGTGGACATTGCCCATCTCACAAAGATTGACTCTTCAATACCTATATTCAAGGCTGCAGGCCTTCTAGGTTGTGGAGTATCAACAGGGGTTGGTGCTGCTTGGAGAACAGCAAATGTGGAGCCGGGATCGACCGTGGCTATATTTGGACTTGGTTCAATTGGATTAGCTGTGGCAGAGGGCGCAAGACTGTGTGGAGCTACTAGAATTATCGGCGTGGATGTTAACCAAGACAAATTTGAAATTGGAAAAAAGTTTGGAGTCACTGACTTCATCAATCCTGCAAATTGTGAGAATAAATCTGTGACGGAGTTGATGATTGAGATGACTAAGGGGGGTGCAGATTATTGCTTTGAATGTGTTGGAAATTCATCACTGGTGCAACAAGCTTATGCTTGCTGCCGGAAGGGTTGGGGAAAAGCAATTGTATTAGGTGTGGACCAGCCAGGGTCACAACTGACCCTTCCCTCATATGATGTGCTTCATAAAGGCAAAACTCTCATGGGATCCTTCTTTGGAGGACTCAAACCTAAGTCTGATATCCCTGTGCTCCTCAATCGCTACATCAACAAGGAACTACAGCTAGACGAGTTTGTGACACATGAGATGACATTTGAAGACATCAATAAAGCTTTTGATCTACTCATTGAAGGGAAATGTCTCCGTTGTGTAATCTGTATGAACACAGTAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

395

Amino Acids

42.79

Weight (kDa)

5.71

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	43 - 174	7.1e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	217 - 348	2.7e-27	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	485
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	4 cut(s)	295, 625, 990, 1003
AcsI	RAATTY	2 cut(s)	725, 856
AcyI	GRCGYC	1 cut(s)	116
AgsI	TTSAA	9 cut(s)	369, 382, 528, 541, 648, 731, 845, 1106, 1139
AjnI	CCWGG	2 cut(s)	79, 934
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	8 cut(s)	22, 62, 239, 659, 689, 878, 1072, 1121
AluI	AGCT	8 cut(s)	22, 62, 239, 659, 689, 878, 1072, 1121
Alw21I	GWGCWC	1 cut(s)	1041
Alw26I	GTCTC	3 cut(s)	73, 407, 1154
AlwI	GGATC	4 cut(s)	295, 625, 990, 1003
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	5 cut(s)	5, 62, 545, 587, 888
ApoI	RAATTY	2 cut(s)	725, 856
AspA2I	CCTAGG	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	118, 674
AspS9I	GGNCC	1 cut(s)	928
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	95, 384, 452
AvaII	GGWCC	1 cut(s)	928
AvrII	CCTAGG	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	995
BanI	GGYRCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	1113
Bbv12I	GWGCWC	1 cut(s)	1041
BbvI	GCAGC	4 cut(s)	49, 532, 574, 875
BccI	CCATC	1 cut(s)	513
BciT130I	CCWGG	2 cut(s)	81, 936
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	3 cut(s)	73, 407, 1154
BfaI	CTAG	5 cut(s)	219, 557, 693, 1073, 1183
BfmI	CTRYAG	3 cut(s)	207, 546, 1067
BfoI	RGCGCY	1 cut(s)	119
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	5 cut(s)	6, 63, 546, 588, 889
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	5 cut(s)	7, 64, 547, 589, 890
Bme1390I	CCNGG	3 cut(s)	81, 615, 936
Bme18I	GGWCC	1 cut(s)	928
BmgT120I	GGNCC	1 cut(s)	928
BmiI	GGNNCC	4 cut(s)	44, 117, 612, 997
BmrFI	CCNGG	3 cut(s)	81, 615, 936
BmsI	GCATC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	1113
BpuMI	CCSGG	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	9, 218, 624, 935
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 318, 348
Bse1I	ACTGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	81, 936
BseDI	CCNNGG	4 cut(s)	9, 218, 624, 935
BseGI	GGATG	2 cut(s)	19, 715
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	870
BseRI	GAGGAG	1 cut(s)	1031
BseXI	GCAGC	4 cut(s)	49, 532, 574, 875
BsgI	GTGCAG	1 cut(s)	849
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	624
BshFI	GGCC	1 cut(s)	552
BshNI	GGYRCC	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	1041
BsiSI	CCGG	2 cut(s)	614, 892
BsmAI	GTCTC	3 cut(s)	73, 407, 1154
BsnI	GGCC	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	1041
Bsp143I	GATC	7 cut(s)	105, 300, 344, 387, 617, 995, 1126
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	4 cut(s)	44, 117, 612, 997
BspMAI	CTGCAG	2 cut(s)	211, 550
BspPI	GGATC	4 cut(s)	295, 625, 990, 1003
BspT107I	GGYRCC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	870
BssECI	CCNNGG	4 cut(s)	9, 218, 624, 935
BssMI	GATC	7 cut(s)	105, 300, 344, 387, 617, 995, 1126
BssNAI	GTATAC	1 cut(s)	486
BssNI	GRCGYC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	410
BssT1I	CCWWGG	2 cut(s)	9, 218
Bst1107I	GTATAC	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	81, 936
Bst4CI	ACNGT	6 cut(s)	173, 298, 490, 625, 681, 1177
Bst6I	CTCTTC	2 cut(s)	96, 529
BstACI	GRCGYC	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	77, 550, 886
BstDEI	CTNAG	3 cut(s)	276, 819, 1020
BstDSI	CCRYGG	2 cut(s)	9, 624
BstF5I	GGATG	2 cut(s)	19, 715
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	118, 674
BstKTI	GATC	7 cut(s)	108, 303, 347, 390, 620, 998, 1129
BstMAI	GTCTC	3 cut(s)	73, 407, 1154
BstMBI	GATC	7 cut(s)	105, 300, 344, 387, 617, 995, 1126
BstMCI	CGRYCG	1 cut(s)	624
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 124, 671
BstNI	CCWGG	2 cut(s)	81, 936
BstSCI	CCNGG	3 cut(s)	79, 613, 934
BstSFI	CTRYAG	3 cut(s)	207, 546, 1067
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	4 cut(s)	49, 532, 574, 875
BstV2I	GAAGAC	1 cut(s)	1113
BstX2I	RGATCY	2 cut(s)	387, 995
BstYI	RGATCY	2 cut(s)	387, 995
BstZ17I	GTATAC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	552
BtgI	CCRYGG	2 cut(s)	9, 624
BtsCI	GGATG	2 cut(s)	19, 715
BtsIMutI	CAGTG	4 cut(s)	178, 495, 753, 863
Cac8I	GCNNGC	3 cut(s)	77, 550, 886
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	118, 674
Cfr13I	GGNCC	1 cut(s)	928
CviAII	CATG	5 cut(s)	10, 131, 233, 991, 1091
DdeI	CTNAG	3 cut(s)	276, 819, 1020
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	7 cut(s)	107, 302, 346, 389, 619, 997, 1128
DpnII	GATC	7 cut(s)	105, 300, 344, 387, 617, 995, 1126
Eam1104I	CTCTTC	2 cut(s)	96, 529
EarI	CTCTTC	2 cut(s)	96, 529
Eco130I	CCWWGG	2 cut(s)	9, 218
Eco147I	AGGCCT	1 cut(s)	552
Eco32I	GATATC	2 cut(s)	178, 1030
Eco47I	GGWCC	1 cut(s)	928
EcoRII	CCWGG	2 cut(s)	79, 934
EcoRV	GATATC	2 cut(s)	178, 1030
EcoT14I	CCWWGG	2 cut(s)	9, 218
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	9, 218
FaeI	CATG	5 cut(s)	13, 134, 236, 994, 1094
FatI	CATG	5 cut(s)	9, 130, 232, 990, 1090
FauNDI	CATATG	1 cut(s)	961
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	5 cut(s)	6, 63, 546, 588, 889
FokI	GGATG	2 cut(s)	26, 722
Fsp4HI	GCNGC	5 cut(s)	6, 63, 546, 588, 889
FspBI	CTAG	5 cut(s)	219, 557, 693, 1073, 1183
GlaI	GCGC	2 cut(s)	117, 673
GluI	GCNGC	5 cut(s)	6, 63, 546, 588, 889
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	2 cut(s)	614, 892
HhaI	GCGC	2 cut(s)	118, 674
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	5 cut(s)	13, 134, 236, 994, 1094
Hin6I	GCGC	2 cut(s)	116, 672
HinP1I	GCGC	2 cut(s)	116, 672
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HindIII	AAGCTT	2 cut(s)	876, 1119
HinfI	GANTC	5 cut(s)	223, 423, 521, 750, 1011
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	2 cut(s)	614, 892
HphI	GGTGA	3 cut(s)	95, 384, 452
Hpy166II	GTNNAC	4 cut(s)	486, 496, 715, 928
Hpy188I	TCNGA	3 cut(s)	147, 319, 1027
Hpy188III	TCNNGA	2 cut(s)	187, 233
Hpy8I	GTNNAC	4 cut(s)	486, 496, 715, 928
HpyAV	CCTTC	8 cut(s)	190, 281, 388, 563, 889, 962, 1009, 1133
HpyCH4III	ACNGT	6 cut(s)	173, 298, 490, 625, 681, 1177
HpyCH4V	TGCA	7 cut(s)	57, 209, 342, 548, 773, 830, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 124, 671
HpyF3I	CTNAG	3 cut(s)	276, 819, 1020
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	5 cut(s)	13, 134, 236, 994, 1094
HspAI	GCGC	2 cut(s)	116, 672
KasI	GGCGCC	1 cut(s)	115
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	7 cut(s)	105, 300, 344, 387, 617, 995, 1126
LmnI	GCTCC	3 cut(s)	610, 686, 1044
Lsp1109I	GCAGC	4 cut(s)	49, 532, 574, 875
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	5 cut(s)	219, 557, 693, 1073, 1183
MaeIII	GTNAC	6 cut(s)	167, 271, 751, 793, 939, 1084
MalI	GATC	7 cut(s)	107, 302, 346, 389, 619, 997, 1128
MboI	GATC	7 cut(s)	105, 300, 344, 387, 617, 995, 1126
MboII	GAAGA	3 cut(s)	113, 516, 1118
MfeI	CAATTG	2 cut(s)	648, 912
MflI	RGATCY	2 cut(s)	387, 995
MhlI	GDGCHC	1 cut(s)	1041
MluCI	AATT	7 cut(s)	648, 696, 725, 732, 775, 856, 912
Mly113I	GGCGCC	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	515, 759, 1005
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	9 cut(s)	32, 259, 271, 436, 443, 661, 967, 1001, 1052
MseI	TTAA	1 cut(s)	714
MspI	CCGG	2 cut(s)	614, 892
MspR9I	CCNGG	3 cut(s)	81, 615, 936
MunI	CAATTG	2 cut(s)	648, 912
MvaI	CCWGG	2 cut(s)	81, 936
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	85, 124, 671
NarI	GGCGCC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	615
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	961
NdeII	GATC	7 cut(s)	105, 300, 344, 387, 617, 995, 1126
NlaIII	CATG	5 cut(s)	13, 134, 236, 994, 1094
NlaIV	GGNNCC	4 cut(s)	44, 117, 612, 997
NmuCI	GTSAC	6 cut(s)	167, 271, 751, 793, 939, 1084
PagI	TCATGA	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	223, 423
PkrI	GCNGC	5 cut(s)	7, 64, 547, 589, 890
PleI	GAGTC	3 cut(s)	515, 758, 1005
PluTI	GGCGCC	1 cut(s)	119
PpsI	GAGTC	3 cut(s)	515, 758, 1005
Psp6I	CCWGG	2 cut(s)	79, 934
PspGI	CCWGG	2 cut(s)	79, 934
PspN4I	GGNNCC	4 cut(s)	44, 117, 612, 997
PspPI	GGNCC	1 cut(s)	928
PstI	CTGCAG	2 cut(s)	211, 550
PsuI	RGATCY	2 cut(s)	387, 995
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	5 cut(s)	6, 63, 546, 588, 889
Sau3AI	GATC	7 cut(s)	105, 300, 344, 387, 617, 995, 1126
Sau96I	GGNCC	1 cut(s)	928
SchI	GAGTC	3 cut(s)	515, 759, 1005
ScrFI	CCNGG	3 cut(s)	81, 615, 936
SduI	GDGCHC	1 cut(s)	1041
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	3 cut(s)	207, 546, 1067
SfoI	GGCGCC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	928
Sse9I	AATT	7 cut(s)	648, 696, 725, 732, 775, 856, 912
SseBI	AGGCCT	1 cut(s)	552
SspDI	GGCGCC	1 cut(s)	115
SspMI	CTAG	5 cut(s)	219, 557, 693, 1073, 1183
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	79, 613, 934
StyI	CCWWGG	2 cut(s)	9, 218
TaaI	ACNGT	6 cut(s)	173, 298, 490, 625, 681, 1177
TaqI	TCGA	3 cut(s)	52, 470, 620
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	7 cut(s)	648, 696, 725, 732, 775, 856, 912
TfiI	GAWTC	2 cut(s)	223, 423
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	4 cut(s)	178, 495, 760, 870
TseFI	GTSAC	6 cut(s)	167, 271, 751, 793, 939, 1084
TseI	GCWGC	5 cut(s)	5, 62, 545, 587, 888
Tsp45I	GTSAC	6 cut(s)	167, 271, 751, 793, 939, 1084
TspDTI	ATGAA	7 cut(s)	147, 209, 249, 751, 849, 962, 1184
TspGWI	ACGGA	2 cut(s)	812, 1142
TspRI	CASTG	4 cut(s)	178, 495, 760, 870
VpaK11BI	GGWCC	1 cut(s)	928
XapI	RAATTY	2 cut(s)	725, 856
XmaJI	CCTAGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	5 cut(s)	219, 557, 693, 1073, 1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.