Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

27394056 .. 27396904

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37720.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCCTCGTGAAGTCCGCATTCGAGTTATATCTACTTCTGTCTGCCACAGTGATATCTTGTTCTGGAGGATTAAGGACTTTGCTGCAGCAATGTTCCCTAGAATTCTCGGCCACGAAGCTGTCGGGGTCGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTAAGTGAAGGAGATACTGTCATCCCAACATTCTTGGCAGAATGTGGAGAATGTAGAGATTGCAAATCACCAAAGAGCAACCTATGTTCAAAACTACCCTTCAAGTCCTCACGGACCGCGCCTTTTATGCCAAGATATGGGACAAGCAGATTCACAGACCTCAACGGCGAGGCTATATACCATTTCCTATCTGTGTCTAGTTTTAGTGAGTATACAGTGGTAGACATAGCCCATGTCACAAAGATTGATTCTGGAATACCTCTATCTAAGGCTGCAGGCCTTCTGGGGTGTGGAGTATCAACAGGATTTGGTGCTGCATGTAGAACAGCAAATGTTGAGCCAGGATCAACAGTGGCTATATTTGGGCTCGGTTCAGTTGGATTAGCTGTTGCAGAGGGAGCAAGACTCTGTGGAGCCACAAGAATTATCGGCGTGGATGTGAACGAGGACAAATTTGAAGTTGGGAAAAAGTTTGGACTCACTGACTTCGTCAAAGCTGCAAATTCTGAGAATAAATCTGCGAGTGAGTCAATAATTGAGATGACCGATGGCGGTGCAGATTATTGCTTTGAATGTGTGGGAATGGCATCATTGGTGCAAGAAGCTTATGCTTGCTGCCGCAAGGGTTGGGGAAAAACAATTGTGTTAGGAGTGGACAAGCCAGGGTCACAGGTGATTATTTCTTCAAGTGATATCCTTACTACTGGCAAATCCCTCACTGGAGTCATATTTGGAGGACTCAAACCCAAATCGGATATTCCTATTCTCCTAAATCGCTACATCAACAAGGAACTACAACTGGATGAGTTTGTGACACATGAAGTGACATTTGAAGACATCAACAAAGCTTTTGATTTACTCATTGAAGGGAAATCTCTGCGATGTGTAATCTGTATGAATGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

356

Amino Acids

38.1

Weight (kDa)

5.32

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	2 - 136	3.8e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	179 - 231	1.5e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccI	GTMKAC	2 cut(s)	371, 381
AccII	CGCG	1 cut(s)	278
AciI	CCGC	4 cut(s)	16, 276, 711, 778
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	3 cut(s)	102, 611, 661
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	7 cut(s)	249, 262, 617, 731, 846, 992, 1025
AjnI	CCWGG	2 cut(s)	499, 820
AluBI	AGCT	5 cut(s)	119, 545, 656, 764, 1007
AluI	AGCT	5 cut(s)	119, 545, 656, 764, 1007
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	2 cut(s)	109, 436
ApeKI	GCWGC	6 cut(s)	83, 86, 431, 473, 656, 774
ApoI	RAATTY	3 cut(s)	102, 611, 661
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	219, 844
AvaII	GGWCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	528
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	6 cut(s)	70, 98, 418, 460, 643, 761
BccI	CCATC	1 cut(s)	701
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	2 cut(s)	501, 822
BclI	TGATCA	1 cut(s)	1060
BfaI	CTAG	2 cut(s)	99, 357
BfmI	CTRYAG	2 cut(s)	84, 432
BisI	GCNGC	7 cut(s)	84, 87, 432, 474, 657, 775, 778
BlsI	GCNGC	7 cut(s)	85, 88, 433, 475, 658, 776, 779
Bme1390I	CCNGG	2 cut(s)	501, 822
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	2 cut(s)	501, 822
BmsI	GCATC	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	999
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
BpmI	CTGGAG	2 cut(s)	85, 900
BsaJI	CCNNGG	1 cut(s)	821
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	3 cut(s)	868, 883, 963
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	501, 822
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	4 cut(s)	154, 180, 601, 967
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	3 cut(s)	868, 883, 963
BseXI	GCAGC	6 cut(s)	70, 98, 418, 460, 643, 761
BsgI	GTGCAG	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	2 cut(s)	111, 438
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	111, 438
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	503, 1060
BspACI	CCGC	4 cut(s)	16, 276, 711, 778
BspANI	GGCC	2 cut(s)	111, 438
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	574
BspMAI	CTGCAG	2 cut(s)	88, 436
BspPI	GGATC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	868, 883, 963
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	2 cut(s)	503, 1060
BssNAI	GTATAC	1 cut(s)	372
BssSI	CACGAG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	501, 822
Bst4CI	ACNGT	4 cut(s)	50, 178, 376, 511
BstC8I	GCNNGC	2 cut(s)	436, 772
BstDEI	CTNAG	2 cut(s)	426, 666
BstF5I	GGATG	4 cut(s)	154, 180, 601, 967
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	2 cut(s)	506, 1063
BstMBI	GATC	2 cut(s)	503, 1060
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 557
BstNI	CCWGG	2 cut(s)	501, 822
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	499, 820
BstSFI	CTRYAG	2 cut(s)	84, 432
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	6 cut(s)	70, 98, 418, 460, 643, 761
BstV2I	GAAGAC	1 cut(s)	999
BstZ17I	GTATAC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	111, 438
BtgZI	GCGATG	1 cut(s)	1054
BtsCI	GGATG	4 cut(s)	154, 180, 601, 967
BtsIMutI	CAGTG	5 cut(s)	55, 381, 516, 639, 876
Cac8I	GCNNGC	2 cut(s)	436, 772
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	273
CpoI	CGGWCCG	1 cut(s)	273
CspI	CGGWCCG	1 cut(s)	273
CviAII	CATG	3 cut(s)	392, 477, 977
DdeI	CTNAG	2 cut(s)	426, 666
DpnI	GATC	2 cut(s)	505, 1062
DpnII	GATC	2 cut(s)	503, 1060
EaeI	YGGCCR	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	528
Eco32I	GATATC	2 cut(s)	55, 853
Eco47I	GGWCC	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	499, 820
EcoRV	GATATC	2 cut(s)	55, 853
EcoT38I	GRGCYC	1 cut(s)	528
FaeI	CATG	3 cut(s)	395, 480, 980
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	391, 476, 976
FbaI	TGATCA	1 cut(s)	1060
FblI	GTMKAC	2 cut(s)	371, 381
Fnu4HI	GCNGC	7 cut(s)	84, 87, 432, 474, 657, 775, 778
FokI	GGATG	4 cut(s)	161, 167, 608, 974
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	7 cut(s)	84, 87, 432, 474, 657, 775, 778
FspBI	CTAG	2 cut(s)	99, 357
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	7 cut(s)	84, 87, 432, 474, 657, 775, 778
GsuI	CTGGAG	2 cut(s)	85, 900
HaeIII	GGCC	2 cut(s)	111, 438
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	395, 480, 980
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	2 cut(s)	762, 1005
HinfI	GANTC	7 cut(s)	309, 407, 564, 636, 686, 882, 897
HphI	GGTGA	2 cut(s)	219, 844
Hpy166II	GTNNAC	4 cut(s)	372, 382, 601, 814
Hpy188I	TCNGA	2 cut(s)	667, 913
Hpy188III	TCNNGA	3 cut(s)	8, 64, 411
Hpy8I	GTNNAC	4 cut(s)	372, 382, 601, 814
HpyAV	CCTTC	4 cut(s)	161, 268, 449, 1019
HpyCH4III	ACNGT	4 cut(s)	50, 178, 376, 511
HpyCH4V	TGCA	8 cut(s)	86, 222, 434, 476, 551, 659, 716, 757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 557
HpyF3I	CTNAG	2 cut(s)	426, 666
Hsp92II	CATG	3 cut(s)	395, 480, 980
HspAI	GCGC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	1060
Kzo9I	GATC	2 cut(s)	503, 1060
LmnI	GCTCC	2 cut(s)	557, 572
Lsp1109I	GCAGC	6 cut(s)	70, 98, 418, 460, 643, 761
LweI	GCATC	1 cut(s)	755
MaeI	CTAG	2 cut(s)	99, 357
MaeIII	GTNAC	4 cut(s)	394, 825, 970, 982
MalI	GATC	2 cut(s)	505, 1062
MboI	GATC	2 cut(s)	503, 1060
MboII	GAAGA	2 cut(s)	834, 1004
MfeI	CAATTG	1 cut(s)	798
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	6 cut(s)	102, 582, 611, 661, 693, 798
MlyI	GAGTC	5 cut(s)	558, 630, 695, 891, 891
MmeI	TCCRAC	1 cut(s)	517
MseI	TTAA	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	501, 822
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	501, 822
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	286, 557
NdeII	GATC	2 cut(s)	503, 1060
NlaIII	CATG	3 cut(s)	395, 480, 980
NlaIV	GGNNCC	1 cut(s)	574
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	4 cut(s)	394, 825, 970, 982
NspI	RCATGY	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	438
PctI	GAATGC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	309, 407
PflFI	GACNNNGTC	1 cut(s)	647
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	7 cut(s)	85, 88, 433, 475, 658, 776, 779
PleI	GAGTC	5 cut(s)	558, 630, 694, 890, 891
PpsI	GAGTC	5 cut(s)	558, 630, 694, 890, 891
Psp6I	CCWGG	2 cut(s)	499, 820
PspGI	CCWGG	2 cut(s)	499, 820
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	2 cut(s)	88, 436
PsyI	GACNNNGTC	1 cut(s)	647
Rsr2I	CGGWCCG	1 cut(s)	273
RsrII	CGGWCCG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	7 cut(s)	84, 87, 432, 474, 657, 775, 778
Sau3AI	GATC	2 cut(s)	503, 1060
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	5 cut(s)	558, 630, 695, 891, 891
ScrFI	CCNGG	2 cut(s)	501, 822
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	1 cut(s)	755
SfcI	CTRYAG	2 cut(s)	84, 432
SinI	GGWCC	1 cut(s)	273
Sse9I	AATT	6 cut(s)	102, 582, 611, 661, 693, 798
SseBI	AGGCCT	1 cut(s)	438
SsiI	CCGC	4 cut(s)	16, 276, 711, 778
SspMI	CTAG	2 cut(s)	99, 357
StuI	AGGCCT	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	499, 820
TaaI	ACNGT	4 cut(s)	50, 178, 376, 511
TaqI	TCGA	1 cut(s)	22
TaqII	GACCGA	1 cut(s)	719
TasI	AATT	6 cut(s)	102, 582, 611, 661, 693, 798
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	309, 407
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	5 cut(s)	55, 381, 516, 646, 883
TseFI	GTSAC	4 cut(s)	394, 825, 970, 982
TseI	GCWGC	6 cut(s)	83, 86, 431, 473, 656, 774
Tsp45I	GTSAC	4 cut(s)	394, 825, 970, 982
TspDTI	ATGAA	1 cut(s)	993
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	5 cut(s)	55, 381, 516, 646, 883
Tth111I	GACNNNGTC	1 cut(s)	647
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	3 cut(s)	102, 611, 661
XceI	RCATGY	1 cut(s)	480
XmiI	GTMKAC	2 cut(s)	371, 381
XspI	CTAG	2 cut(s)	99, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.