Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

47889733 .. 47891461

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0326900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTGGATGATCAGGACTCGTTCACGCGGTGCGTTAAGTCGAATCCTCCGGAGCCGTGGAATTGGAATATCTATTTGTTCCCCTTGTGGTGTTTCGGAGTGGTGATTCGATACTTTGTTCTATTTCCGGCAAGGGTACTGGTCTTGACTATTGGATGGATAATTTTCCTTTCGGCATTCATTCCTGTGCACTTCCTACTCAAAGGCCATGAAAAATTGAGAAAAAATTTAGAGAGATGTTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGATGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCCGGAACAAATGACGCATTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

132

Amino Acids

15.49

Weight (kDa)

8.77

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	30
AfaI	GTAC	2 cut(s)	138, 296
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw21I	GWGCWC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	2 cut(s)	205, 339
ApaLI	GTGCAC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	374
BfaI	CTAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	281, 309
BmuI	ACTGGG	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	56, 298
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse1I	ACTGG	2 cut(s)	144, 286
BseAI	TCCGGA	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	56, 298
BseGI	GGATG	3 cut(s)	13, 161, 369
BseNI	ACTGG	2 cut(s)	144, 286
BseSI	GKGCMC	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	207, 341
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	50, 128, 374
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	207, 341
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	207, 341
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	144, 286
BssECI	CCNNGG	2 cut(s)	56, 298
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	298
BstDSI	CCRYGG	2 cut(s)	56, 298
BstF5I	GGATG	3 cut(s)	13, 161, 369
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	207, 341
BtgI	CCRYGG	2 cut(s)	56, 298
BtsCI	GGATG	3 cut(s)	13, 161, 369
BveI	ACCTGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	137, 295
CviAII	CATG	2 cut(s)	209, 299
CviJI	RGCY	5 cut(s)	55, 207, 261, 310, 341
CviKI_1	RGCY	5 cut(s)	55, 207, 261, 310, 341
CviQI	GTAC	2 cut(s)	137, 295
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
DraIII	CACNNNGTG	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	2 cut(s)	212, 302
FaiI	YATR	5 cut(s)	210, 300, 317, 348, 356
FatI	CATG	2 cut(s)	208, 298
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	3 cut(s)	20, 168, 356
FspBI	CTAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	207, 341
HapII	CCGG	3 cut(s)	50, 128, 374
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	212, 302
HinfI	GANTC	3 cut(s)	17, 43, 106
HpaII	CCGG	3 cut(s)	50, 128, 374
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	24, 190
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	3 cut(s)	14, 50, 145
Hpy8I	GTNNAC	2 cut(s)	24, 190
HpyCH4V	TGCA	2 cut(s)	190, 272
Hsp92II	CATG	2 cut(s)	212, 302
Kpn2I	TCCGGA	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	63, 125, 141, 198, 267, 314, 387
LweI	GCATC	2 cut(s)	281, 309
MaeI	CTAG	1 cut(s)	312
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	4 cut(s)	61, 162, 215, 226
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	1 cut(s)	57
Mox20I	TGGCCA	1 cut(s)	341
MroI	TCCGGA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	2 cut(s)	36, 251
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	3 cut(s)	50, 128, 374
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	176
MvnI	CGCG	1 cut(s)	28
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	212, 302
NlaIV	GGNNCC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	43, 106
PfoI	TCCNGGA	1 cut(s)	372
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	138, 296
RsaNI	GTAC	2 cut(s)	137, 295
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	36, 251
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	2 cut(s)	263, 333
SfaNI	GCATC	2 cut(s)	281, 309
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	4 cut(s)	61, 162, 215, 226
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	298
TaqI	TCGA	2 cut(s)	41, 109
TasI	AATT	4 cut(s)	61, 162, 215, 226
TfiI	GAWTC	2 cut(s)	43, 106
Tru1I	TTAA	2 cut(s)	36, 251
Tru9I	TTAA	2 cut(s)	36, 251
TspDTI	ATGAA	3 cut(s)	169, 225, 355
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	226
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.