Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

33046747 .. 33049864

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G356700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAACCTGAGAAGTCGTCAAGTGGAAGCAGAGGGAAGCCTATTCGATGCAGAGCTGCGGTGAGTCGCAAACCAGGTGAGCCTCTAGTGATGGAAGAAATCATTGTGGCACCCCCAATGCCTCATGAAGTCCGCATTCGAATTATCTGTACCTCTCTGTGTCACAGCGATATCATTTTCTGGAAAATGAAGGACTTTCCTGGAATCTTCCCAAGAATTCTCGGTCACGAAGCTATCGGGATTGTGGAGAGTGTTGGGGAGGATGTCAATGAAGTAACTGAAGGAGATACTGTCATCCCAACATTCATGTCGCAATGTGGAGAATGTGCAGATTGCAGATCGACAAAGAGTAACCTATGTACAAAACTCCCCTTCAAGGTCTCTCCTTTTATGCCAAGATACGAGACAAGCAGATTCACTGACCTCAATGGGGAGGTTCTATACCATTTCTTGTTCGTGTCTAGTTTTACTGAGTATACAGTGGTAGACATAGCCCATGTCACAAAGATTGACCCTGCAGTAACTCCAAGCAGGGCCTGTCTTCTCGGCTGTGGAATATCAACCGGAGTTGGTGCTGCTTGGAGAACAGCAAATGTGGAGGAGGGATCTACTGTTGCTATATTTGGGCTGGGTTCAATTGGTTTAGCTGTTGCGGAGGGAGCAAGACTGTGTGGAGCTACTAGAATCATTGGTGTAGATGTGAACCAACAGAAATTTGAAATTGGAAAAAAGTTTGGGCTCACTGACTTTGTCGACCCTGCAAATTGTGAGAATAAATCTGTTAGCCAGGTGATCATTGAGATGACTGGTGGGGGTGCAGACTATTGCTTTGAATGCGTTGGATTGGCATCATTGGTGCAAGAAGCTTACGCTTGCTGCCGAAAGGGTTGGGGAAAAACAGTTGTGTTAGGTGTGGACAAGCCAGCATCACTGGTGAGCCTCCCCTCTCAAGAGATCCTTCATGGTGGAAAAAACCTAATGGGATCCTTATTCGGAGGACTCAAACCTAAATCTGATATCCCTCTTCTCCTCAATCGTTACATGGACAAGGAACTACAACTTGATGAGTTTGTGACACATGAGGTGAGGTTTGAAGACATCAACAAAGCGTTTGATTTACTCATTGAAGGGCAATGTCTTCGATGTGTAATCTCTATGTGCAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

390

Amino Acids

42.35

Weight (kDa)

5.45

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	3 cut(s)	476, 486, 753
AciI	CCGC	3 cut(s)	59, 133, 653
AclWI	GGATC	4 cut(s)	613, 949, 978, 991
AcsI	RAATTY	2 cut(s)	216, 713
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	2 cut(s)	151, 361
AfiI	CCNNNNNNNGG	2 cut(s)	376, 430
AgsI	TTSAA	6 cut(s)	376, 636, 719, 833, 1094, 1127
AjnI	CCWGG	3 cut(s)	73, 199, 786
AluBI	AGCT	5 cut(s)	56, 233, 647, 677, 866
AluI	AGCT	5 cut(s)	56, 233, 647, 677, 866
Alw26I	GTCTC	2 cut(s)	385, 398
AlwI	GGATC	4 cut(s)	613, 949, 978, 991
AlwNI	CAGNNNCTG	1 cut(s)	537
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	3 cut(s)	56, 575, 876
ApoI	RAATTY	2 cut(s)	216, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	5 cut(s)	73, 89, 802, 946, 1096
AsuII	TTCGAA	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	983
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	741
BbsI	GAAGAC	3 cut(s)	533, 1101, 1130
BbvI	GCAGC	3 cut(s)	43, 562, 863
BccI	CCATC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	1121, 1155
BciT130I	CCWGG	3 cut(s)	75, 201, 788
BclI	TGATCA	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	385, 398
BfaI	CTAG	3 cut(s)	86, 462, 681
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	3 cut(s)	57, 576, 877
BlsI	GCNGC	3 cut(s)	58, 577, 878
Bme1390I	CCNGG	3 cut(s)	75, 201, 788
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	3 cut(s)	6, 111, 985
BmrFI	CCNGG	3 cut(s)	75, 201, 788
BmsI	GCATC	3 cut(s)	38, 857, 935
BpiI	GAAGAC	3 cut(s)	533, 1101, 1130
Bpu14I	TTCGAA	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	933
BsaBI	GATNNNNATC	1 cut(s)	847
BsaI	GGTCTC	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 430
Bse1I	ACTGG	2 cut(s)	811, 936
Bse3DI	GCAATG	3 cut(s)	320, 1139, 1168
Bse8I	GATNNNNATC	1 cut(s)	847
BseBI	CCWGG	3 cut(s)	75, 201, 788
BseGI	GGATG	2 cut(s)	268, 294
BseJI	GATNNNNATC	1 cut(s)	847
BseLI	CCNNNNNNNGG	2 cut(s)	376, 430
BseMI	GCAATG	3 cut(s)	320, 1139, 1168
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	811, 936
BseRI	GAGGAG	2 cut(s)	614, 1019
BseXI	GCAGC	3 cut(s)	43, 562, 863
BseYI	CCCAGC	1 cut(s)	628
BsgI	GTGCAG	2 cut(s)	348, 837
BshFI	GGCC	1 cut(s)	536
BshNI	GGYRCC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	376, 430
BsmAI	GTCTC	2 cut(s)	385, 398
BsmI	GAATGC	2 cut(s)	135, 839
BsnI	GGCC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	338, 605, 792, 954, 983
BspACI	CCGC	3 cut(s)	59, 133, 653
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	6, 111, 985
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	4 cut(s)	613, 949, 978, 991
BspT104I	TTCGAA	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	385
BsrDI	GCAATG	3 cut(s)	320, 1139, 1168
BsrGI	TGTACA	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	811, 936
BssMI	GATC	5 cut(s)	338, 605, 792, 954, 983
BssNAI	GTATAC	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	477
Bst2UI	CCWGG	3 cut(s)	75, 201, 788
Bst4CI	ACNGT	5 cut(s)	292, 481, 613, 669, 901
Bst6I	CTCTTC	1 cut(s)	1029
BstAUI	TGTACA	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	874, 924
BstDEI	CTNAG	2 cut(s)	9, 471
BstF5I	GGATG	2 cut(s)	268, 294
BstKTI	GATC	5 cut(s)	341, 608, 795, 957, 986
BstMAI	GTCTC	2 cut(s)	385, 398
BstMBI	GATC	5 cut(s)	338, 605, 792, 954, 983
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 834
BstNI	CCWGG	3 cut(s)	75, 201, 788
BstSCI	CCNGG	3 cut(s)	73, 199, 786
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	43, 562, 863
BstV2I	GAAGAC	3 cut(s)	533, 1101, 1130
BstX2I	RGATCY	3 cut(s)	605, 954, 983
BstYI	RGATCY	3 cut(s)	605, 954, 983
BstZ17I	GTATAC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	268, 294
BtsIMutI	CAGTG	4 cut(s)	417, 486, 741, 929
Cac8I	GCNNGC	2 cut(s)	874, 924
CaiI	CAGNNNCTG	1 cut(s)	537
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	534
CsiI	ACCWGGT	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	150, 360
CviAII	CATG	6 cut(s)	125, 307, 497, 962, 1042, 1079
CviQI	GTAC	2 cut(s)	150, 360
DdeI	CTNAG	2 cut(s)	9, 471
DpnI	GATC	5 cut(s)	340, 607, 794, 956, 985
DpnII	GATC	5 cut(s)	338, 605, 792, 954, 983
Eam1104I	CTCTTC	1 cut(s)	1029
EarI	CTCTTC	1 cut(s)	1029
Eco24I	GRGCYC	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	385
Eco32I	GATATC	2 cut(s)	172, 1018
Eco57I	CTGAAG	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	3 cut(s)	73, 199, 786
EcoRV	GATATC	2 cut(s)	172, 1018
EcoT38I	GRGCYC	1 cut(s)	741
FaeI	CATG	6 cut(s)	128, 310, 500, 965, 1045, 1082
FalI	AAGNNNNNCTT	2 cut(s)	942, 974
FatI	CATG	6 cut(s)	124, 306, 496, 961, 1041, 1078
FbaI	TGATCA	1 cut(s)	792
FblI	GTMKAC	3 cut(s)	476, 486, 753
Fnu4HI	GCNGC	3 cut(s)	57, 576, 877
FokI	GGATG	2 cut(s)	275, 281
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	3 cut(s)	57, 576, 877
FspBI	CTAG	3 cut(s)	86, 462, 681
GluI	GCNGC	3 cut(s)	57, 576, 877
GsaI	CCCAGC	1 cut(s)	632
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	1 cut(s)	564
Hin1II	CATG	6 cut(s)	128, 310, 500, 965, 1045, 1082
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	5 cut(s)	64, 204, 414, 684, 999
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	5 cut(s)	73, 89, 802, 946, 1096
Hpy166II	GTNNAC	5 cut(s)	477, 487, 703, 754, 916
Hpy188I	TCNGA	2 cut(s)	995, 1015
Hpy188III	TCNNGA	5 cut(s)	125, 181, 227, 238, 950
Hpy8I	GTNNAC	5 cut(s)	477, 487, 703, 754, 916
HpyAV	CCTTC	5 cut(s)	184, 275, 382, 968, 1121
HpyCH4III	ACNGT	5 cut(s)	292, 481, 613, 669, 901
HpyCH4V	TGCA	8 cut(s)	51, 329, 336, 518, 761, 818, 859, 1161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 834
HpyF3I	CTNAG	2 cut(s)	9, 471
Hsp92II	CATG	6 cut(s)	128, 310, 500, 965, 1045, 1082
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	5 cut(s)	338, 605, 792, 954, 983
LmnI	GCTCC	2 cut(s)	659, 674
Lsp1109I	GCAGC	3 cut(s)	43, 562, 863
LweI	GCATC	3 cut(s)	38, 857, 935
MabI	ACCWGGT	1 cut(s)	73
MaeI	CTAG	3 cut(s)	86, 462, 681
MaeIII	GTNAC	8 cut(s)	161, 224, 274, 350, 499, 520, 1037, 1072
MalI	GATC	5 cut(s)	340, 607, 794, 956, 985
MboI	GATC	5 cut(s)	338, 605, 792, 954, 983
MboII	GAAGA	6 cut(s)	107, 199, 533, 1016, 1106, 1130
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	3 cut(s)	605, 954, 983
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	6 cut(s)	141, 216, 636, 713, 720, 763
MlyI	GAGTC	2 cut(s)	73, 993
MmeI	TCCRAC	1 cut(s)	820
MslI	CAYNNNNRTG	1 cut(s)	800
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	3 cut(s)	75, 201, 788
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	2 cut(s)	135, 839
MvaI	CCWGG	3 cut(s)	75, 201, 788
MwoI	GCNNNNNNNGC	2 cut(s)	659, 834
NdeII	GATC	5 cut(s)	338, 605, 792, 954, 983
NlaIII	CATG	6 cut(s)	128, 310, 500, 965, 1045, 1082
NlaIV	GGNNCC	3 cut(s)	6, 111, 985
NmeAIII	GCCGAG	1 cut(s)	525
NmuCI	GTSAC	4 cut(s)	161, 224, 499, 1072
NspV	TTCGAA	1 cut(s)	139
PagI	TCATGA	1 cut(s)	124
PctI	GAATGC	2 cut(s)	135, 839
PfeI	GAWTC	3 cut(s)	204, 414, 684
PflFI	GACNNNGTC	1 cut(s)	749
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	58, 577, 878
PleI	GAGTC	2 cut(s)	72, 993
PpsI	GAGTC	2 cut(s)	72, 993
Psp6I	CCWGG	3 cut(s)	73, 199, 786
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	3 cut(s)	73, 199, 786
PspN4I	GGNNCC	3 cut(s)	6, 111, 985
PspPI	GGNCC	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	537
PsuI	RGATCY	3 cut(s)	605, 954, 983
PsyI	GACNNNGTC	1 cut(s)	749
RsaI	GTAC	2 cut(s)	151, 361
RsaNI	GTAC	2 cut(s)	150, 360
RseI	CAYNNNNRTG	1 cut(s)	800
SalI	GTCGAC	1 cut(s)	752
SatI	GCNGC	3 cut(s)	57, 576, 877
Sau3AI	GATC	5 cut(s)	338, 605, 792, 954, 983
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	2 cut(s)	73, 993
ScrFI	CCNGG	3 cut(s)	75, 201, 788
SduI	GDGCHC	1 cut(s)	741
SexAI	ACCWGGT	1 cut(s)	73
SfaNI	GCATC	3 cut(s)	38, 857, 935
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	800
SmlI	CTYRAG	1 cut(s)	948
SmoI	CTYRAG	1 cut(s)	948
Sse9I	AATT	6 cut(s)	141, 216, 636, 713, 720, 763
SsiI	CCGC	3 cut(s)	59, 133, 653
SspMI	CTAG	3 cut(s)	86, 462, 681
StyD4I	CCNGG	3 cut(s)	73, 199, 786
TaaI	ACNGT	5 cut(s)	292, 481, 613, 669, 901
TaqI	TCGA	5 cut(s)	46, 139, 341, 753, 1141
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	6 cut(s)	141, 216, 636, 713, 720, 763
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	3 cut(s)	204, 414, 684
TscAI	CASTG	4 cut(s)	424, 486, 748, 936
TseFI	GTSAC	4 cut(s)	161, 224, 499, 1072
TseI	GCWGC	3 cut(s)	56, 575, 876
Tsp45I	GTSAC	4 cut(s)	161, 224, 499, 1072
TspDTI	ATGAA	5 cut(s)	141, 203, 285, 295, 950
TspRI	CASTG	4 cut(s)	424, 486, 748, 936
Tth111I	GACNNNGTC	1 cut(s)	749
XapI	RAATTY	2 cut(s)	216, 713
XmiI	GTMKAC	3 cut(s)	476, 486, 753
XspI	CTAG	3 cut(s)	86, 462, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.