Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

27403826 .. 27412722

Gene Structure 8897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37760.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCTGAGAAGGTGTCAAGTGGAAGTAGAGGGAAGCCTATTCGATGCAGAGCTGCGGTGTGTCGGAAGCCAGGTGAGCCGCTAGTGATCGAAGAGATCGTAGTGGCACCGCCGATGCCTCATGAAGTGCGCATTCGAATTATATATACTTCCCTCTGCCACAGTGATATCGTCTTCTGGAAAATGAAGGACTTCCCTGGAATTTTCCCTATAATTCTCGGTCACGAAGCTATCGGGGTTGTGGAGAGTGTTGGGGAGGATGTCAATGAGGTAAGTGAAGGAGATACGGTCATCCCAACATTCATGGCAGAGTGTGGAGAATGTAGAGATTGCAAATCAACAAAGAGCAACCTGTGTTCATCTTCAGAACTGCCCTTCAAGGTCTCACCTTTTATGCCAAGATATGGGACAAGCAGATTCACTGACCTCAACGGCGAGACTCTATACCATTTCCTATGTGTGTCTAGTTTTAGTGAGTATACAGTGATAGACATAGCCCATGTCACAAAGATTGATTCTGGAATACCTCTATCTAAGGCTGCAGGCCTTCTGGGGTGTGGAGTATCAACAGGGGTTGGTGCTGCATGGAGAACTGCAAAAGTAGAACCAGGATCAACTGTGGCTATATTCGGGCTTGGTTCAATTGGATTAGCTGTTGCAGAGGGAGCAAGACTTTGTGGAGCTACAAGAATTATTGGTGTGGATGTGAACCAAGACAAATTTGAAGTTGGGAAAAAGTTTGGACTCACTGACTTCGTTAATGCTGCAAATTCTGAGAATAAATCTGCGAGCGAGGTGATAATTGAGATGACTGACGGTGGTGCAGATTATTGCTTTGAATGTGTAGGGATGGCATCAGTGGTGCAAGAAGCTTATGCATGTTGCCGCAAGGGTTGGGGAAAAACAATCGTGTTGGGAGTGGACAAGCCAGGGTCACAGGTGAGCATTCCTTCAGCGAGTATCCTTTGTACTGGCAAATCACTCATGGGAGTCTTATTTGGAGGACTGAAACCCAAATCAGATATTCCTATTCTCCTAAATCGCTACATCAACAAGGAACTACAACTGGATGAGTTTATTACACATGAAGTAACATTTGAGGACATTAACAAAGCTTTTGATCTACTCATTGAAGGGAAATGTTTGCGATGTGTAATCTGTATGAATGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

392

Amino Acids

42.06

Weight (kDa)

5.44

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	40 - 169	1.4e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	213 - 343	2.4e-24	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	479
AciI	CCGC	4 cut(s)	56, 80, 110, 886
AclWI	GGATC	1 cut(s)	619
AcsI	RAATTY	3 cut(s)	201, 719, 769
AcuI	CTGAAG	2 cut(s)	348, 936
AfaI	GTAC	1 cut(s)	970
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	5 cut(s)	379, 642, 725, 839, 1133
AjnI	CCWGG	4 cut(s)	70, 196, 607, 928
AluBI	AGCT	6 cut(s)	53, 230, 653, 683, 872, 1115
AluI	AGCT	6 cut(s)	53, 230, 653, 683, 872, 1115
Alw26I	GTCTC	2 cut(s)	388, 431
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	4 cut(s)	53, 539, 581, 764
ApoI	RAATTY	3 cut(s)	201, 719, 769
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	132
AsuHPI	GGTGA	4 cut(s)	86, 378, 808, 952
AsuII	TTCGAA	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	4 cut(s)	40, 526, 568, 751
BccI	CCATC	1 cut(s)	844
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	4 cut(s)	72, 198, 609, 930
BciVI	GTATCC	1 cut(s)	971
BclI	TGATCA	1 cut(s)	1168
BcoDI	GTCTC	2 cut(s)	388, 431
BfaI	CTAG	2 cut(s)	83, 465
BfmI	CTRYAG	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	971
BisI	GCNGC	6 cut(s)	54, 80, 540, 582, 765, 886
BlsI	GCNGC	6 cut(s)	55, 81, 541, 583, 766, 887
Bme1390I	CCNGG	4 cut(s)	72, 198, 609, 930
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	4 cut(s)	72, 198, 609, 930
BmsI	GCATC	3 cut(s)	35, 105, 863
BpiI	GAAGAC	1 cut(s)	166
Bpu14I	TTCGAA	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	196, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	976, 1071
BseBI	CCWGG	4 cut(s)	72, 198, 609, 930
BseDI	CCNNGG	2 cut(s)	196, 929
BseGI	GGATG	5 cut(s)	265, 291, 709, 855, 1075
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	2 cut(s)	976, 1071
BseXI	GCAGC	4 cut(s)	40, 526, 568, 751
BsgI	GTGCAG	1 cut(s)	843
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	388, 431
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	2 cut(s)	132, 945
BsnI	GGCC	1 cut(s)	546
Bso31I	GGTCTC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	87, 96, 611, 1120, 1168
BspACI	CCGC	4 cut(s)	56, 80, 110, 886
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	766
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	1 cut(s)	619
BspT104I	TTCGAA	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	976, 1071
BssECI	CCNNGG	2 cut(s)	196, 929
BssMI	GATC	5 cut(s)	87, 96, 611, 1120, 1168
BssNAI	GTATAC	1 cut(s)	480
Bst1107I	GTATAC	1 cut(s)	480
Bst2UI	CCWGG	4 cut(s)	72, 198, 609, 930
Bst4CI	ACNGT	5 cut(s)	164, 289, 484, 619, 818
Bst6I	CTCTTC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	544, 790
BstDEI	CTNAG	3 cut(s)	6, 534, 774
BstF5I	GGATG	5 cut(s)	265, 291, 709, 855, 1075
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	5 cut(s)	90, 99, 614, 1123, 1171
BstMAI	GTCTC	2 cut(s)	388, 431
BstMBI	GATC	5 cut(s)	87, 96, 611, 1120, 1168
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 665
BstNI	CCWGG	4 cut(s)	72, 198, 609, 930
BstNSI	RCATGY	1 cut(s)	882
BstSCI	CCNGG	4 cut(s)	70, 196, 607, 928
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	4 cut(s)	40, 526, 568, 751
BstV2I	GAAGAC	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	971
BsuRI	GGCC	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	1162
BtsCI	GGATG	5 cut(s)	265, 291, 709, 855, 1075
BtsIMutI	CAGTG	5 cut(s)	169, 420, 489, 747, 864
Cac8I	GCNNGC	2 cut(s)	544, 790
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	969
CviAII	CATG	7 cut(s)	122, 304, 500, 585, 879, 985, 1085
CviQI	GTAC	1 cut(s)	969
DdeI	CTNAG	3 cut(s)	6, 534, 774
DpnI	GATC	5 cut(s)	89, 98, 613, 1122, 1170
DpnII	GATC	5 cut(s)	87, 96, 611, 1120, 1168
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	348, 936
EcoRII	CCWGG	4 cut(s)	70, 196, 607, 928
EcoRV	GATATC	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	880
FaeI	CATG	7 cut(s)	125, 307, 503, 588, 882, 988, 1088
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	7 cut(s)	121, 303, 499, 584, 878, 984, 1084
FbaI	TGATCA	1 cut(s)	1168
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	6 cut(s)	54, 80, 540, 582, 765, 886
FokI	GGATG	5 cut(s)	272, 278, 716, 862, 1082
Fsp4HI	GCNGC	6 cut(s)	54, 80, 540, 582, 765, 886
FspAI	RTGCGCAY	1 cut(s)	131
FspBI	CTAG	2 cut(s)	83, 465
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	6 cut(s)	54, 80, 540, 582, 765, 886
HaeIII	GGCC	1 cut(s)	546
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	125, 307, 503, 588, 882, 988, 1088
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	870, 1113
HinfI	GANTC	5 cut(s)	417, 439, 515, 744, 990
HphI	GGTGA	4 cut(s)	86, 378, 808, 952
Hpy166II	GTNNAC	3 cut(s)	480, 709, 922
Hpy188I	TCNGA	4 cut(s)	66, 367, 775, 1021
Hpy188III	TCNNGA	4 cut(s)	122, 178, 224, 519
Hpy8I	GTNNAC	3 cut(s)	480, 709, 922
HpyAV	CCTTC	7 cut(s)	4, 181, 272, 385, 557, 960, 1127
HpyCH4III	ACNGT	5 cut(s)	164, 289, 484, 619, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 665
HpyF3I	CTNAG	3 cut(s)	6, 534, 774
Hsp92II	CATG	7 cut(s)	125, 307, 503, 588, 882, 988, 1088
HspAI	GCGC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	1168
Kzo9I	GATC	5 cut(s)	87, 96, 611, 1120, 1168
LmnI	GCTCC	2 cut(s)	665, 680
Lsp1109I	GCAGC	4 cut(s)	40, 526, 568, 751
LweI	GCATC	3 cut(s)	35, 105, 863
MaeI	CTAG	2 cut(s)	83, 465
MaeIII	GTNAC	4 cut(s)	221, 502, 933, 1090
MalI	GATC	5 cut(s)	89, 98, 613, 1122, 1170
MboI	GATC	5 cut(s)	87, 96, 611, 1120, 1168
MboII	GAAGA	3 cut(s)	104, 166, 354
MfeI	CAATTG	1 cut(s)	642
MluCI	AATT	8 cut(s)	138, 201, 213, 642, 690, 719, 769, 801
MlyI	GAGTC	3 cut(s)	433, 738, 999
MmeI	TCCRAC	1 cut(s)	44
Mph1103I	ATGCAT	1 cut(s)	880
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	759, 1107
MspR9I	CCNGG	4 cut(s)	72, 198, 609, 930
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	2 cut(s)	132, 945
MvaI	CCWGG	4 cut(s)	72, 198, 609, 930
MwoI	GCNNNNNNNGC	2 cut(s)	76, 665
NdeII	GATC	5 cut(s)	87, 96, 611, 1120, 1168
NlaIII	CATG	7 cut(s)	125, 307, 503, 588, 882, 988, 1088
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	3 cut(s)	221, 502, 933
NsbI	TGCGCA	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	880
NspI	RCATGY	1 cut(s)	882
NspV	TTCGAA	1 cut(s)	136
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	2 cut(s)	132, 945
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	417, 515
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	6 cut(s)	55, 81, 541, 583, 766, 887
PleI	GAGTC	3 cut(s)	433, 738, 998
PpsI	GAGTC	3 cut(s)	433, 738, 998
Psp6I	CCWGG	4 cut(s)	70, 196, 607, 928
PspGI	CCWGG	4 cut(s)	70, 196, 607, 928
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	544
RsaI	GTAC	1 cut(s)	970
RsaNI	GTAC	1 cut(s)	969
SaqAI	TTAA	2 cut(s)	759, 1107
SatI	GCNGC	6 cut(s)	54, 80, 540, 582, 765, 886
Sau3AI	GATC	5 cut(s)	87, 96, 611, 1120, 1168
SchI	GAGTC	3 cut(s)	433, 738, 999
ScrFI	CCNGG	4 cut(s)	72, 198, 609, 930
SfaNI	GCATC	3 cut(s)	35, 105, 863
SfcI	CTRYAG	1 cut(s)	540
SfuI	TTCGAA	1 cut(s)	136
Sse9I	AATT	8 cut(s)	138, 201, 213, 642, 690, 719, 769, 801
SseBI	AGGCCT	1 cut(s)	546
SsiI	CCGC	4 cut(s)	56, 80, 110, 886
SspMI	CTAG	2 cut(s)	83, 465
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	4 cut(s)	70, 196, 607, 928
TaaI	ACNGT	5 cut(s)	164, 289, 484, 619, 818
TaqI	TCGA	3 cut(s)	43, 90, 136
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	8 cut(s)	138, 201, 213, 642, 690, 719, 769, 801
TatI	WGTACW	1 cut(s)	968
TauI	GCSGC	2 cut(s)	82, 888
TfiI	GAWTC	2 cut(s)	417, 515
Tru1I	TTAA	2 cut(s)	759, 1107
Tru9I	TTAA	2 cut(s)	759, 1107
TscAI	CASTG	5 cut(s)	169, 427, 489, 754, 864
TseFI	GTSAC	3 cut(s)	221, 502, 933
TseI	GCWGC	4 cut(s)	53, 539, 581, 764
Tsp45I	GTSAC	3 cut(s)	221, 502, 933
TspDTI	ATGAA	5 cut(s)	138, 200, 292, 348, 1101
TspRI	CASTG	5 cut(s)	169, 427, 489, 754, 864
Van91I	CCANNNNNTGG	1 cut(s)	404
XapI	RAATTY	3 cut(s)	201, 719, 769
XceI	RCATGY	1 cut(s)	882
XmiI	GTMKAC	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	83, 465
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.