Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001278

Physical Location & Seq

Genomic Coordinates Reverse (-)

47836402 .. 47838278

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0326600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAATCCAACTTCTACTGTTAAGGCCATTGGTCACAGTCTTTCAATTGTATCTCTTCTCAATATGTTCCAGCAATATATGAGCTATGAAGGAAGTTCTATTTGTACAAAGGAAGAGATTTCTGTTCCAGCAATATATGTTAGAGTGGTTGCTGAGGGGGAGATTCCACTCGTGGTAGCTAAAGGAGAGGAGATAGCACGTTATAAAGGACTTGATCCGACAGAGCGTTTACTAATGTTAAAAGCACTATGTGAACTCCGAGCCGATCAAGATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGGTCATAGATTATACAAGGAAGTAACTGTCATTGAGTCGAAGACAAAAGTTAGGGGAACAGGGTGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCGAGGAATTTCAGAAAGTTATGGATGAACTCTCATCAAGCAAATTTGCAGGAGAACGTGATGCTGCTAAGACTATTGAAACTGATGCTATTCCTGCTCTTGAGAAACTTCATAAGTTTAGTAGCAATTTACCAGTGAACTTTATTAATAGTCTTATTCTTGCATACTTTGGTGTTCATATTAGCAGTTACAAGAAGGCTGCCAATGGATTCTCTGCTAAGCTCACTCAACAGCAAAAACAACAGCAAGCATATAAGCCCCTGTTGTCTGGCATAGCCTTCAGACAACAGCAAGCATATAAGCCCCTGTTGTCTGGCACAACCTTCAGACAACAGCAAGCATATAAGCTCCTGTTGTGTGGCACAGAATTCAGACAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00190 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 ko05204 map00010 map00071 map00190 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map04260 map04714 map04932 map05010 map05012 map05016 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

297

Amino Acids

33.3

Weight (kDa)

8.69

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42250
fragaria_vesca	FvH4_2g37710 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37720 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760 FvH4_2g37760
malus_domestica	MD15G1004100.v1.1
prunus_persica	Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G356700_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1 Prupe.1G543900_v2.0.a1
pyrus_communis	pycom15g00290
rosa_chinensis	RchiOBHm_Chr6g0303981 RchiOBHm_Chr6g0303991 RchiOBHm_Chr6g0304011
rosa_laevigata	RLG00000011016 RLG00000011028
rosa_multiflora	Rmu_co8412721.1_g000001 Rmu_sc0003805.1_g000017 Rmu_sc0003805.1_g000019 Rmu_sc0019860.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164180 Rroxscaffold_7G00164210
rosa_rugosa	Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326500 Rorug06G0326600 Rorug06G0326700 Rorug06G0326800 Rorug06G0326900 Rorug06G0327000 Rorug06G0327100 Rorug06G0327100 Rorug06G0327100
rosa_samantha	Rh6BG462000 Rh6DG440000 Rh6DG440300
rosa_wichuraiana	Rw6G038180 Rw6G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	4 cut(s)	318, 518, 554, 878
AcuI	CTGAAG	2 cut(s)	775, 820
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	45, 466, 590
AluBI	AGCT	4 cut(s)	84, 179, 733, 859
AluI	AGCT	4 cut(s)	84, 179, 733, 859
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	575, 710
ApoI	RAATTY	4 cut(s)	318, 518, 554, 878
AseI	ATTAAT	2 cut(s)	291, 657
AvaI	CYCGRG	1 cut(s)	512
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	443
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	562, 697
BccI	CCATC	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	500
BisI	GCNGC	2 cut(s)	576, 711
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	2 cut(s)	577, 712
BmeT110I	CYCGRG	1 cut(s)	512
BmsI	GCATC	4 cut(s)	265, 286, 562, 586
BpiI	GAAGAC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	632
Bse1I	ACTGG	2 cut(s)	487, 644
BseGI	GGATG	1 cut(s)	541
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	487, 644
BseRI	GAGGAG	2 cut(s)	203, 363
BseXI	GCAGC	2 cut(s)	562, 697
BshFI	GGCC	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	512
Bsp1407I	TGTACA	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	214, 265
Bsp1720I	GCTNAGC	1 cut(s)	729
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	487, 644
BssMI	GATC	2 cut(s)	214, 265
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst4CI	ACNGT	4 cut(s)	19, 38, 424, 891
Bst6I	CTCTTC	2 cut(s)	60, 108
BstAUI	TGTACA	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	759, 804, 849
BstDEI	CTNAG	3 cut(s)	153, 579, 729
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	2 cut(s)	217, 268
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	2 cut(s)	214, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstV1I	GCAGC	2 cut(s)	562, 697
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	285, 494, 651
Cac8I	GCNNGC	3 cut(s)	759, 804, 849
Csp6I	GTAC	1 cut(s)	105
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	3 cut(s)	153, 579, 729
DpnI	GATC	2 cut(s)	216, 267
DpnII	GATC	2 cut(s)	214, 265
DraIII	CACNNNGTG	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	60, 108
EarI	CTCTTC	2 cut(s)	60, 108
Eco57I	CTGAAG	2 cut(s)	775, 820
Eco88I	CYCGRG	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	878
Esp3I	CGTCTC	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	576, 711
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	2 cut(s)	576, 711
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	2 cut(s)	576, 711
HaeIII	GGCC	1 cut(s)	26
HinfI	GANTC	4 cut(s)	4, 163, 431, 720
Hpy166II	GTNNAC	3 cut(s)	230, 254, 649
Hpy188I	TCNGA	7 cut(s)	219, 260, 303, 525, 794, 839, 884
Hpy188III	TCNNGA	3 cut(s)	269, 512, 611
Hpy8I	GTNNAC	3 cut(s)	230, 254, 649
HpyAV	CCTTC	4 cut(s)	83, 700, 799, 844
HpyCH4III	ACNGT	4 cut(s)	19, 38, 424, 891
HpyCH4IV	ACGT	2 cut(s)	199, 568
HpyCH4V	TGCA	3 cut(s)	278, 560, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	3 cut(s)	153, 579, 729
HpySE526I	ACGT	2 cut(s)	199, 568
Kzo9I	GATC	2 cut(s)	214, 265
LmnI	GCTCC	1 cut(s)	864
Lsp1109I	GCAGC	2 cut(s)	562, 697
LweI	GCATC	4 cut(s)	265, 286, 562, 586
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	2 cut(s)	199, 568
MaeIII	GTNAC	3 cut(s)	32, 418, 698
MalI	GATC	2 cut(s)	216, 267
MboI	GATC	2 cut(s)	214, 265
MboII	GAAGA	4 cut(s)	47, 125, 315, 448
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	6 cut(s)	45, 318, 518, 554, 637, 878
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	2 cut(s)	32, 242
MnlI	CCTC	5 cut(s)	148, 181, 341, 354, 508
MseI	TTAA	4 cut(s)	21, 239, 291, 657
MunI	CAATTG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	605
NdeII	GATC	2 cut(s)	214, 265
NmuCI	GTSAC	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	4, 163, 720
PkrI	GCNGC	2 cut(s)	577, 712
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PshBI	ATTAAT	2 cut(s)	291, 657
PsiI	TTATAA	1 cut(s)	204
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	21, 239, 291, 657
SatI	GCNGC	2 cut(s)	576, 711
Sau3AI	GATC	2 cut(s)	214, 265
SchI	GAGTC	1 cut(s)	440
SetI	ASST	9 cut(s)	86, 181, 202, 400, 471, 571, 735, 836, 861
SfaNI	GCATC	4 cut(s)	265, 286, 562, 586
Sfr274I	CTCGAG	1 cut(s)	512
SlaI	CTCGAG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	512, 611
SmoI	CTYRAG	2 cut(s)	512, 611
Sse9I	AATT	6 cut(s)	45, 318, 518, 554, 637, 878
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	500
TaaI	ACNGT	4 cut(s)	19, 38, 424, 891
TaiI	ACGT	2 cut(s)	202, 571
TaqI	TCGA	2 cut(s)	434, 513
TasI	AATT	6 cut(s)	45, 318, 518, 554, 637, 878
TatI	WGTACW	1 cut(s)	104
TfiI	GAWTC	3 cut(s)	4, 163, 720
Tru1I	TTAA	4 cut(s)	21, 239, 291, 657
Tru9I	TTAA	4 cut(s)	21, 239, 291, 657
TscAI	CASTG	3 cut(s)	285, 494, 651
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	575, 710
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	6 cut(s)	17, 102, 315, 552, 611, 677
TspRI	CASTG	3 cut(s)	285, 494, 651
VspI	ATTAAT	2 cut(s)	291, 657
XapI	RAATTY	4 cut(s)	318, 518, 554, 878
XhoI	CTCGAG	1 cut(s)	512
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.