AT5G43130

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001817
Physical Location & Seq
Reverse (-)
17315326 .. 17321231
5906 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43130.2

Sequence Viewer

Length: 2472 bp
ATGGATCCTTCAATTTTCAAGCTCCTTGAAGAAGATGAGGATGAATCGATGCATTCAGGAGCTGACGTAGACGCGTTCCAAGCTGCTCTGAATCGTGATATTGAAGGTTCTATGACAACTTCAATACCCCACGTGACAAACCCAGGAAACAACCATTCTTCCAGGCAGCAGTTTTCGACATGGAAGAATGGTATTGGAGATTCTAATATCAATGTCCAGACTCAGCATAGCCTTGAAAGTACTCAGATGAAGGAGCAAGAAGGATCGACTTTAGAAAATCAACATCAACATGATTTGAAACGCGCAAATGAACCTCATTTACAACACAACCAGCCTCAAGACCTTCATCGAGCTGGTCAACTCTGGGAGAATCCCTCGCAGGTCCCCCAATCAACTGGGTTACCGATTAGTGAAAAGAATCCTACTGGTAATGAATCAGATAGATCCCATAATCAAGAGAGTGAATCTCAGTATATGAAACTGCAAAAGATGAGTAGTCAACAGGCTCGGGGAGTGGAACCGCCTGTTAACCCTATGAATGTTAACCCTATAAACCGCAACCCTAAGCAAGTACCATTTGCTGCTTTGCTTCCTACTTTAATGAACCAACTCGATAAAGATAGAGCACTGCAGCTCCGTACCCTATATGCTAGACTTAAGAAAAATGAAATCCCCAAAGAGGGGTTCACACGACATATGAAAGATATTGTGGGCGATCAGATGCTCAGGATGGCAGTTAGTAAACTCCAGCAGGTGAACTATAACCAGGGAAAAATTGGAATTCAAGCTCCTTCTACTGAAATCAATAATCAAAAATCTCAGTCTGATCCTCGTGCAGTCCATCTTAACCAACTACCGTCCTCAGCTTCAGGCACCTTAGGCAGTTCAGTTCCGGTACAGGGACTTACCAAACATCCGCAGCACCAGATGCAGCATCCACCAAGTTCTTTTCCTATGTATACCACTTCTGGTAGTTTTCATTCATTCCCGGGTCCAAACACCAATGCTTCTGGTTCCACGTTGAGACCTCACCTTCATGATTCCCATATGAGACATGTGGCACATAACCAGCCTATGGGATCAACTGGTCTTGGAGGACCGCCCCAGTCTACCACAAACATGATGACTATGCCCAAGTTTGAGAGGCCAAGTTCTGTAAATGATCCGAGTAGGGTTCAGGGTGGCGCTACATCGCACTTCCAGAACAGCTCATCATTGCCTCTAAATTCTGCACCTGGTCAAGGATCATCAGTGTCCCACGTAAAGCAGGAATCAGTTGATCAAAGTTTTGAAAAGAATAATGCAGCCTCAATGACTTCGAATGAGGACTTAGAGAAGGAGTCCTCTAGAATGGTTTTATCCACGCCTAACAACATGGCGCCTGCAAGCTCTGTTTCTCCTTCCATGACAACTCAACTAGACGCCAGCACAACTATGAATTCTCGTGGCCCATTGGGAACCTCTCAAGGAGGAGCTAATGCTAGGATGCCACCCAAAAAGCCTTCTGTTGGTCAGAAAAAACCTCTTGAGACATTAGGTTCTTCACCTCCACCACCAAGCAAGAAGCAAAAAGTAGCAGGGAATTCTATGGATCAAAGTATTGAACAGCTCAATGATGTCACTGCAGTCAGTGGTGTTAATCTCAGGGAAGAGGAAGAACAATTATTTTCTGGGGCCAAGGAAGATGGTCGTGTTTCCGAAGCATCTCGGAGAGTTGTGCACGAAGAAGAAGAAAGATTAATCTTGCAGAAGAATCCTCTGCAAAGAAAGCTGGCGGAAATTATGGCTAAAGCCGGGTTAAAGCAGATAAGCAATGATGTCGAACGGTGCTTATCTTTGTGTGTGGAGGAAAGGATGCGAGGACTATTATCCCATATAATTCGGTTGTCAAAGCAGCGGGTTGATGCTGAGAAATCTAGGCACCGGACTTTTATCACATCAGATATTCGGCTACAAATCAACGAAATGAATCAGAAGGTGAAGGAAGAATGGGAGAAGAAACAGGCTGAAGCAGAAAAGCTTAAGAAACCGAGTGAGAGTGAAGAAGGTGATGGTGGAGTTGACAGTGAGAAGGATAAAGAAGATAATCGTTCAAAGGGTGTGAAGGGAAATAAAGAGGATGACGACAAAATGAGAACGACAGCTGCAAATGTTGCTGCTCGTGCTGCTGTCGGAGGAGATGATGCGTTCTTAAAATGGCAATTAATGGCTGAAGCTCGTCAGAAATCTGTATCTGAAGCTGGTAAAGATGGGAATCAGAAAACTACTTCAGGTGGAGGAAAGAACTCCAAAGATAGACAAGATGGTGGACGACGGTTTTCTGGTACTGGTGGTCGAAGAGTAGGGAAAAACCAAGGTTCGTCGCTTCAACCGAAAGTGGTGAGGACAATCTCTGTGAAGGATGTGGTTGCGGTCCTCGAAAGAGAGCCACAGATGTCCAAATCCACTCTGATGTATCGATTAATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

823

Amino Acids

90.49

Weight (kDa)

8.94

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 188 - 251 9.5e-21 RCD1-SRO-TAF4 (RST) plant domain
TAF4 PF05236 537 - 850 6.3e-80 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 742
Acc36I ACCTGC 2 cut(s) 370, 742
AccB1I GGYRCC 3 cut(s) 872, 1378, 1920
AccB7I CCANNNNNTGG 1 cut(s) 1075
AccI GTMKAC 3 cut(s) 69, 959, 1109
AccII CGCG 2 cut(s) 74, 303
AciI CCGC 7 cut(s) 521, 556, 917, 1100, 1775, 1897, 2411
AclWI GGATC 8 cut(s) 12, 271, 438, 821, 1087, 1157, 1252, 1599
AcsI RAATTY 4 cut(s) 780, 1225, 1438, 1582
AcuI CTGAAG 5 cut(s) 852, 2028, 2232, 2253, 2256
AcvI CACGTG 1 cut(s) 133
AcyI GRCGYC 2 cut(s) 1379, 1422
AfaI GTAC 5 cut(s) 241, 573, 640, 897, 2326
AfiI CCNNNNNNNGG 7 cut(s) 679, 680, 681, 899, 1075, 1241, 1508
AflII CTTAAG 2 cut(s) 656, 2021
AflIII ACRYGT 2 cut(s) 72, 1054
AjnI CCWGG 4 cut(s) 142, 161, 765, 1234
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
Alw21I GWGCWC 2 cut(s) 628, 1722
Alw26I GTCTC 3 cut(s) 1018, 1045, 1523
Alw44I GTGCAC 1 cut(s) 1718
AlwI GGATC 8 cut(s) 12, 271, 438, 821, 1087, 1157, 1252, 1599
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 2 cut(s) 507, 988
AoxI GGCC 3 cut(s) 1145, 1447, 1674
ApaLI GTGCAC 1 cut(s) 1718
ApoI RAATTY 4 cut(s) 780, 1225, 1438, 1582
AseI ATTAAT 3 cut(s) 1739, 2204, 2462
AspLEI GCGC 3 cut(s) 305, 1187, 1381
AspS9I GGNCC 6 cut(s) 382, 992, 1097, 1448, 1674, 2413
AsuC2I CCSGG 3 cut(s) 989, 990, 1795
AsuHPI GGTGA 6 cut(s) 766, 1022, 1536, 1990, 2060, 2392
AsuII TTCGAA 1 cut(s) 1319
AvaI CYCGRG 2 cut(s) 507, 988
AvaII GGWCC 4 cut(s) 382, 992, 1097, 2413
AxyI CCTNAGG 1 cut(s) 877
BaeGI GKGCMC 1 cut(s) 1722
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 3 cut(s) 872, 1378, 1920
BauI CACGAG 3 cut(s) 831, 1443, 2160
BbrPI CACGTG 1 cut(s) 133
Bbv12I GWGCWC 2 cut(s) 628, 1722
BbvCI CCTCAGC 1 cut(s) 862
BccI CCATC 6 cut(s) 724, 849, 1679, 2045, 2243, 2297
BcgI CGANNNNNNTGC 2 cut(s) 1801, 1835
BciT130I CCWGG 4 cut(s) 144, 163, 767, 1236
BclI TGATCA 1 cut(s) 1279
BcnI CCSGG 3 cut(s) 989, 990, 1795
BcoDI GTCTC 3 cut(s) 1018, 1045, 1523
BfaI CTAG 5 cut(s) 651, 1347, 1418, 1482, 1917
BfmI CTRYAG 2 cut(s) 629, 1623
BfoI RGCGCY 2 cut(s) 1188, 1382
BfrI CTTAAG 2 cut(s) 656, 2021
BfuAI ACCTGC 2 cut(s) 370, 742
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 7 cut(s) 144, 163, 767, 989, 990, 1236, 1795
Bme18I GGWCC 4 cut(s) 382, 992, 1097, 2413
BmeT110I CYCGRG 2 cut(s) 507, 988
BmgT120I GGNCC 6 cut(s) 382, 992, 1097, 1448, 1674, 2413
BmrFI CCNGG 7 cut(s) 144, 163, 767, 989, 990, 1236, 1795
BmrI ACTGGG 2 cut(s) 405, 1099
BmsI GCATC 9 cut(s) 39, 711, 918, 943, 1476, 1712, 1845, 1894, 2173
BmuI ACTGGG 2 cut(s) 405, 1099
BplI GAGNNNNNCTC 4 cut(s) 359, 391, 451, 483
BpmI CTGGAG 1 cut(s) 731
Bpu10I CCTNAGC 3 cut(s) 564, 725, 862
Bpu14I TTCGAA 1 cut(s) 1319
BpuEI CTTGAG 3 cut(s) 321, 1449, 1547
BpuMI CCSGG 3 cut(s) 989, 990, 1795
Bsa29I ATCGAT 2 cut(s) 47, 2458
BsaAI YACGTR 2 cut(s) 133, 1261
BsaBI GATNNNNATC 1 cut(s) 2253
BsaHI GRCGYC 2 cut(s) 1379, 1422
BsaI GGTCTC 1 cut(s) 1018
BsaJI CCNNGG 5 cut(s) 142, 766, 988, 1677, 2353
BsaWI WCCGGW 2 cut(s) 892, 1923
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 618, 648
Bsc4I CCNNNNNNNGG 7 cut(s) 679, 680, 681, 899, 1075, 1241, 1508
Bse1I ACTGG 5 cut(s) 400, 430, 1090, 1105, 2332
Bse21I CCTNAGG 1 cut(s) 877
Bse3DI GCAATG 2 cut(s) 1214, 1819
Bse8I GATNNNNATC 1 cut(s) 2253
BseBI CCWGG 4 cut(s) 144, 163, 767, 1236
BseCI ATCGAT 2 cut(s) 47, 2458
BseDI CCNNGG 5 cut(s) 142, 766, 988, 1677, 2353
BseGI GGATG 8 cut(s) 46, 735, 913, 934, 1491, 1860, 2125, 2407
BseJI GATNNNNATC 1 cut(s) 2253
BseLI CCNNNNNNNGG 7 cut(s) 679, 680, 681, 899, 1075, 1241, 1508
BseMI GCAATG 2 cut(s) 1214, 1819
BseMII CTCAG 8 cut(s) 236, 257, 482, 739, 833, 876, 1657, 1899
BseNI ACTGG 5 cut(s) 400, 430, 1090, 1105, 2332
BseRI GAGGAG 2 cut(s) 1485, 2190
BseSI GKGCMC 1 cut(s) 1722
BsgI GTGCAG 2 cut(s) 855, 1215
Bsh1236I CGCG 2 cut(s) 74, 303
BshFI GGCC 3 cut(s) 1147, 1449, 1676
BshNI GGYRCC 3 cut(s) 872, 1378, 1920
BshVI ATCGAT 2 cut(s) 47, 2458
BsiHKAI GWGCWC 2 cut(s) 628, 1722
BsiHKCI CYCGRG 2 cut(s) 507, 988
BsiSI CCGG 4 cut(s) 893, 989, 1794, 1924
BslFI GGGAC 3 cut(s) 368, 915, 1240
BslI CCNNNNNNNGG 7 cut(s) 679, 680, 681, 899, 1075, 1241, 1508
BsmAI GTCTC 3 cut(s) 1018, 1045, 1523
BsmFI GGGAC 3 cut(s) 368, 915, 1240
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 3 cut(s) 1147, 1449, 1676
Bso31I GGTCTC 1 cut(s) 1018
BsoBI CYCGRG 2 cut(s) 507, 988
Bsp119I TTCGAA 1 cut(s) 1319
Bsp1286I GDGCHC 2 cut(s) 628, 1722
BspACI CCGC 7 cut(s) 521, 556, 917, 1100, 1775, 1897, 2411
BspANI GGCC 3 cut(s) 1147, 1449, 1676
BspCNI CTCAG 8 cut(s) 235, 256, 481, 738, 832, 875, 1656, 1900
BspDI ATCGAT 2 cut(s) 47, 2458
BspFNI CGCG 2 cut(s) 74, 303
BspHI TCATGA 1 cut(s) 1036
BspMAI CTGCAG 2 cut(s) 633, 1627
BspMI ACCTGC 2 cut(s) 370, 742
BspPI GGATC 8 cut(s) 12, 271, 438, 821, 1087, 1157, 1252, 1599
BspT104I TTCGAA 1 cut(s) 1319
BspT107I GGYRCC 3 cut(s) 872, 1378, 1920
BspTI CTTAAG 2 cut(s) 656, 2021
BspTNI GGTCTC 1 cut(s) 1018
BsrDI GCAATG 2 cut(s) 1214, 1819
BsrI ACTGG 5 cut(s) 400, 430, 1090, 1105, 2332
BssECI CCNNGG 5 cut(s) 142, 766, 988, 1677, 2353
BssNAI GTATAC 1 cut(s) 960
BssNI GRCGYC 2 cut(s) 1379, 1422
BssSI CACGAG 3 cut(s) 831, 1443, 2160
BssT1I CCWWGG 2 cut(s) 1677, 2353
Bst1107I GTATAC 1 cut(s) 960
Bst2BI CACGAG 3 cut(s) 831, 1443, 2160
Bst2UI CCWGG 4 cut(s) 144, 163, 767, 1236
Bst4CI ACNGT 4 cut(s) 858, 1827, 2066, 2316
Bst6I CTCTTC 2 cut(s) 1644, 2332
BstACI GRCGYC 2 cut(s) 1379, 1422
BstAFI CTTAAG 2 cut(s) 656, 2021
BstAPI GCANNNNNTGC 2 cut(s) 928, 2153
BstBAI YACGTR 2 cut(s) 133, 1261
BstBI TTCGAA 1 cut(s) 1319
BstC8I GCNNGC 4 cut(s) 1383, 1387, 1426, 1773
BstEII GGTNACC 1 cut(s) 399
BstENI CCTNNNNNAGG 1 cut(s) 1239
BstF5I GGATG 8 cut(s) 46, 735, 913, 934, 1491, 1860, 2125, 2407
BstFNI CGCG 2 cut(s) 74, 303
BstH2I RGCGCY 2 cut(s) 1188, 1382
BstHHI GCGC 3 cut(s) 305, 1187, 1381
BstMAI GTCTC 3 cut(s) 1018, 1045, 1523
BstMWI GCNNNNNNNGC 7 cut(s) 80, 879, 928, 1768, 2153, 2162, 2165
BstNI CCWGG 4 cut(s) 144, 163, 767, 1236
BstNSI RCATGY 1 cut(s) 1058
BstPI GGTNACC 1 cut(s) 399
BstSCI CCNGG 7 cut(s) 142, 161, 765, 987, 988, 1234, 1793
BstSFI CTRYAG 2 cut(s) 629, 1623
BstSLI GKGCMC 1 cut(s) 1722
BstUI CGCG 2 cut(s) 74, 303
BstX2I RGATCY 2 cut(s) 4, 443
BstXI CCANNNNNNTGG 1 cut(s) 395
BstYI RGATCY 2 cut(s) 4, 443
BstZ17I GTATAC 1 cut(s) 960
Bsu15I ATCGAT 2 cut(s) 47, 2458
Bsu36I CCTNAGG 1 cut(s) 877
BsuRI GGCC 3 cut(s) 1147, 1449, 1676
BsuTUI ATCGAT 2 cut(s) 47, 2458
BtgZI GCGATG 1 cut(s) 1176
BtsCI GGATG 8 cut(s) 46, 735, 913, 934, 1491, 1860, 2125, 2407
BtsI GCAGTG 2 cut(s) 626, 1620
BtsIMutI CAGTG 5 cut(s) 626, 1257, 1620, 1636, 2071
BveI ACCTGC 2 cut(s) 370, 742
Cac8I GCNNGC 4 cut(s) 1383, 1387, 1426, 1773
CaiI CAGNNNCTG 1 cut(s) 62
CciI TCATGA 1 cut(s) 1036
CfoI GCGC 3 cut(s) 305, 1187, 1381
Cfr13I GGNCC 6 cut(s) 382, 992, 1097, 1448, 1674, 2413
Cfr9I CCCGGG 1 cut(s) 988
ClaI ATCGAT 2 cut(s) 47, 2458
CseI GACGC 2 cut(s) 80, 1430
CsiI ACCWGGT 1 cut(s) 1234
Csp6I GTAC 5 cut(s) 240, 572, 639, 896, 2325
CviAII CATG 7 cut(s) 180, 290, 1037, 1055, 1120, 1375, 1405
CviQI GTAC 5 cut(s) 240, 572, 639, 896, 2325
DinI GGCGCC 1 cut(s) 1380
Eam1104I CTCTTC 2 cut(s) 1644, 2332
EarI CTCTTC 2 cut(s) 1644, 2332
EciI GGCGGA 1 cut(s) 1790
Eco130I CCWWGG 2 cut(s) 1677, 2353
Eco31I GGTCTC 1 cut(s) 1018
Eco47I GGWCC 4 cut(s) 382, 992, 1097, 2413
Eco57I CTGAAG 5 cut(s) 852, 2028, 2232, 2253, 2256
Eco72I CACGTG 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 877
Eco88I CYCGRG 2 cut(s) 507, 988
Eco91I GGTNACC 1 cut(s) 399
EcoNI CCTNNNNNAGG 1 cut(s) 1239
EcoO109I RGGNCCY 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 399
EcoRI GAATTC 3 cut(s) 780, 1438, 1582
EcoRII CCWGG 4 cut(s) 142, 161, 765, 1234
EcoT14I CCWWGG 2 cut(s) 1677, 2353
EcoT22I ATGCAT 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 1380
EheI GGCGCC 1 cut(s) 1380
ErhI CCWWGG 2 cut(s) 1677, 2353
FaeI CATG 7 cut(s) 183, 293, 1040, 1058, 1123, 1378, 1408
FaqI GGGAC 3 cut(s) 368, 915, 1240
FatI CATG 7 cut(s) 179, 289, 1036, 1054, 1119, 1374, 1404
FauI CCCGC 1 cut(s) 1890
FauNDI CATATG 2 cut(s) 696, 1047
FbaI TGATCA 1 cut(s) 1279
FblI GTMKAC 3 cut(s) 69, 959, 1109
FokI GGATG 8 cut(s) 53, 742, 900, 921, 1498, 1867, 2132, 2414
FspBI CTAG 5 cut(s) 651, 1347, 1418, 1482, 1917
GlaI GCGC 3 cut(s) 304, 1186, 1380
GsuI CTGGAG 1 cut(s) 731
HaeII RGCGCY 2 cut(s) 1188, 1382
HaeIII GGCC 3 cut(s) 1147, 1449, 1676
HapII CCGG 4 cut(s) 893, 989, 1794, 1924
HgaI GACGC 2 cut(s) 80, 1430
HhaI GCGC 3 cut(s) 305, 1187, 1381
Hin1I GRCGYC 2 cut(s) 1379, 1422
Hin1II CATG 7 cut(s) 183, 293, 1040, 1058, 1123, 1378, 1408
Hin6I GCGC 3 cut(s) 303, 1185, 1379
HinP1I GCGC 3 cut(s) 303, 1185, 1379
HincII GTYRAC 5 cut(s) 359, 500, 529, 544, 2062
HindII GTYRAC 5 cut(s) 359, 500, 529, 544, 2062
HindIII AAGCTT 1 cut(s) 2018
HpaI GTTAAC 2 cut(s) 529, 544
HpaII CCGG 4 cut(s) 893, 989, 1794, 1924
HphI GGTGA 6 cut(s) 766, 1022, 1536, 1990, 2060, 2392
Hpy99I CGWCG 2 cut(s) 2316, 2365
HpyCH4III ACNGT 4 cut(s) 858, 1827, 2066, 2316
HpyCH4IV ACGT 4 cut(s) 66, 132, 1019, 1260
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 879, 928, 1768, 2153, 2162, 2165
HpySE526I ACGT 4 cut(s) 66, 132, 1019, 1260
Hsp92I GRCGYC 2 cut(s) 1379, 1422
Hsp92II CATG 7 cut(s) 183, 293, 1040, 1058, 1123, 1378, 1408
HspAI GCGC 3 cut(s) 303, 1185, 1379
KasI GGCGCC 1 cut(s) 1378
Ksp22I TGATCA 1 cut(s) 1279
KspAI GTTAAC 2 cut(s) 529, 544
LmnI GCTCC 6 cut(s) 27, 59, 253, 639, 793, 1472
LweI GCATC 9 cut(s) 39, 711, 918, 943, 1476, 1712, 1845, 1894, 2173
MabI ACCWGGT 1 cut(s) 1234
MaeI CTAG 5 cut(s) 651, 1347, 1418, 1482, 1917
MaeII ACGT 4 cut(s) 66, 132, 1019, 1260
MaeIII GTNAC 3 cut(s) 133, 399, 1618
MflI RGATCY 2 cut(s) 4, 443
MhlI GDGCHC 2 cut(s) 628, 1722
MluI ACGCGT 1 cut(s) 72
Mly113I GGCGCC 1 cut(s) 1379
MlyI GAGTC 2 cut(s) 214, 1349
MmeI TCCRAC 1 cut(s) 2152
Mph1103I ATGCAT 1 cut(s) 54
MslI CAYNNNNRTG 5 cut(s) 288, 1035, 1118, 1433, 2450
MspA1I CMGCKG 2 cut(s) 1897, 2144
MspCI CTTAAG 2 cut(s) 656, 2021
MspI CCGG 4 cut(s) 893, 989, 1794, 1924
MspR9I CCNGG 7 cut(s) 144, 163, 767, 989, 990, 1236, 1795
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 4 cut(s) 144, 163, 767, 1236
MvnI CGCG 2 cut(s) 74, 303
MwoI GCNNNNNNNGC 7 cut(s) 80, 879, 928, 1768, 2153, 2162, 2165
NarI GGCGCC 1 cut(s) 1379
NciI CCSGG 3 cut(s) 989, 990, 1795
NdeI CATATG 2 cut(s) 696, 1047
NlaIII CATG 7 cut(s) 183, 293, 1040, 1058, 1123, 1378, 1408
NmuCI GTSAC 2 cut(s) 133, 1618
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 1 cut(s) 1058
NspV TTCGAA 1 cut(s) 1319
PagI TCATGA 1 cut(s) 1036
PaqCI CACCTGC 1 cut(s) 742
PciI ACATGT 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 2369
PctI GAATGC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 1075
PleI GAGTC 2 cut(s) 214, 1348
PluTI GGCGCC 1 cut(s) 1382
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 2 cut(s) 214, 1348
Ppu21I YACGTR 2 cut(s) 133, 1261
PpuMI RGGWCCY 1 cut(s) 382
PscI ACATGT 1 cut(s) 1054
PshBI ATTAAT 3 cut(s) 1739, 2204, 2462
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 4 cut(s) 142, 161, 765, 1234
PspCI CACGTG 1 cut(s) 133
PspEI GGTNACC 1 cut(s) 399
PspGI CCWGG 4 cut(s) 142, 161, 765, 1234
PspPI GGNCC 6 cut(s) 382, 992, 1097, 1448, 1674, 2413
PspPPI RGGWCCY 1 cut(s) 382
PsrI GAACNNNNNNTAC 2 cut(s) 303, 335
PstI CTGCAG 2 cut(s) 633, 1627
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 2 cut(s) 4, 443
PvuII CAGCTG 1 cut(s) 2144
RsaI GTAC 5 cut(s) 241, 573, 640, 897, 2326
RsaNI GTAC 5 cut(s) 240, 572, 639, 896, 2325
RseI CAYNNNNRTG 5 cut(s) 288, 1035, 1118, 1433, 2450
Sau96I GGNCC 6 cut(s) 382, 992, 1097, 1448, 1674, 2413
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 2 cut(s) 214, 1349
ScrFI CCNGG 7 cut(s) 144, 163, 767, 989, 990, 1236, 1795
SduI GDGCHC 2 cut(s) 628, 1722
SexAI ACCWGGT 1 cut(s) 1234
SfaNI GCATC 9 cut(s) 39, 711, 918, 943, 1476, 1712, 1845, 1894, 2173
SfcI CTRYAG 2 cut(s) 629, 1623
SfoI GGCGCC 1 cut(s) 1380
SfuI TTCGAA 1 cut(s) 1319
SinI GGWCC 4 cut(s) 382, 992, 1097, 2413
SmaI CCCGGG 1 cut(s) 990
SmiMI CAYNNNNRTG 5 cut(s) 288, 1035, 1118, 1433, 2450
SmlI CTYRAG 5 cut(s) 336, 656, 1464, 1526, 2021
SmoI CTYRAG 5 cut(s) 336, 656, 1464, 1526, 2021
SsiI CCGC 7 cut(s) 521, 556, 917, 1100, 1775, 1897, 2411
SspDI GGCGCC 1 cut(s) 1378
SspMI CTAG 5 cut(s) 651, 1347, 1418, 1482, 1917
StyD4I CCNGG 7 cut(s) 142, 161, 765, 987, 988, 1234, 1793
StyI CCWWGG 2 cut(s) 1677, 2353
TaaI ACNGT 4 cut(s) 858, 1827, 2066, 2316
TaiI ACGT 4 cut(s) 69, 135, 1022, 1263
TatI WGTACW 1 cut(s) 239
TscAI CASTG 5 cut(s) 633, 1257, 1627, 1636, 2071
TseFI GTSAC 2 cut(s) 133, 1618
Tsp45I GTSAC 2 cut(s) 133, 1618
TspGWI ACGGA 1 cut(s) 626
TspMI CCCGGG 1 cut(s) 988
TspRI CASTG 5 cut(s) 633, 1257, 1627, 1636, 2071
Van91I CCANNNNNTGG 1 cut(s) 1075
Vha464I CTTAAG 2 cut(s) 656, 2021
VneI GTGCAC 1 cut(s) 1718
VpaK11BI GGWCC 4 cut(s) 382, 992, 1097, 2413
VspI ATTAAT 3 cut(s) 1739, 2204, 2462
XagI CCTNNNNNAGG 1 cut(s) 1239
XapI RAATTY 4 cut(s) 780, 1225, 1438, 1582
XbaI TCTAGA 1 cut(s) 1346
XceI RCATGY 1 cut(s) 1058
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XmaI CCCGGG 1 cut(s) 988
XmiI GTMKAC 3 cut(s) 69, 959, 1109
XspI CTAG 5 cut(s) 651, 1347, 1418, 1482, 1917
ZrmI AGTACT 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.