RchiOBHm_Chr1g0327781

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001817
Physical Location & Seq
Reverse (-)
16706812 .. 16717962
11151 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55727

Sequence Viewer

Length: 2688 bp
ATGTATTCAAGGGCTGATGTGGAGGCCTTCCAGGCTGCAATGAATAAGGACATAGAAGGAAATGTGTCTACTTCCCAGCTGTCTGATTCGCACACTGCTGTTTCCTCTCAACGAAGCAATCGTACCTCTATTCAGCCATTACAGCAGTTTCATGCTGCTAGCCAGGATGGGTGTGCAGCTTCTCGAATTCGACATAACCAAAAGATTCTGCACCAGCAAGGACTGCATTCATTTGGACTGGAGCCAAAATCACAGCAGTTCATTGCTGATTATAGACAACAAAACTACGATACTTCTGAGGAACTCAATCAGTTTCCTTTGCTTCAAGAAGGTGATCTCCAAAAAGGACAAGGAGAACAAAATACCAGCCAGATTTTTGAAACAATTGTAATGTCGATTCCGCAGAAAAATCCAATTTCAACACAGCAGGACATAACATCTAATCCAGAAAGTGAATTTCAGTATTTGAAGCTTCCGAAGATCGGTAGTCAAAAGGAAATGATCACAGAGCAGTCAAACACCCCAATACCATCTGACATATTACTACCTTGCTTATTGTCTCGTGTTGATAGAAACAGAGGCTTGCAACTTACCACTCTATATGGTAAACTTCAGAAAAAAGAACTTTCCGGAACTGATTTTTTCCGTCAAATAAGACGTGTTGTTGGGGAGCAGATGCTCAGATCAACAGTAATGGAAATACAGTTACAGATGAAAAGCTTGCAGCCTGCTCCTGAACGCCAGTTATCGCCTCTTGCTCAACTACCTCCACGGATGTTTTCTATCAGTGCAGGTTCTACACAGTTGACTGATCCTCCTTCATTCTCACAATATCAGAGAGGCGCTAACCCTGCCACAGACCTATCAGACATTTCCTCCTCAGCAGTTCAAGTGCAGGTTGATTCAAGCCATTCCGTTGTTGAAAACAGTGCTAAAAATCTGATGGACACTGGAAATCGGTCAGATTCTCATGGAATGCAATTAAGTCAAATGTCTTCTTCCTGCACACGCGCTGCTTATCCTAAAAGGAAATGCTCCTCAGCATCCACGCAGGTACTTAATGAGAAGCGGCAACAACAATTGCACTACCCACAATCATCGGTTGCCATGTATGCAAATACCAGCGGTCAGTCAGGTGGGGAAGCACAGGAAATGAACATTATTGGTGTATCCAAATTAGTGATGCAAAATTCTGTGTTAGAACCTAATAGACTGCAAGGTGGATCTCATTTTCACTTTACAAATAATTCAACGTTACCGCAGAATCCAGTTGCTTGGCAATCCTCAAATAGAGGACAGAATTTTGGTCTTTTGTCCTCAATGGCTTATGTAGACCGGGGACCAGATGATCGGGCTTCTGATCAACAGCAGAAACCCCCATTAAATTCACAGGGATTGCCTTCTGTTTCTGCTCCACAAGTTGAACCAGAAAATGTATCGCCTGGAATATCAACAAATGAGTCTTTTGAGAAGCATTCTTTAAAATCTACAAGCATAGTGCCTTCATCAGCAGCAACAACAGTTCCCACAAAACCTGTTTCTCCTCCCATAACAACACAAGTCGGTGCTAATTTCACGTTAGGCCCTCATATTCATTCCAGAATTTCTCTTGCTGGAGTTGATAGTGGAACACCTCCAGGGAACGCTTTTATTGGCAAAAAGAAGCCTCGTAAAGCAGTTGGTTCTTCATCACAACCAACAAGTAAGAAGCAAAAAGTATCTGGAGCTTTTTTGTATCAAAGCATTGAGCAGGAAAATGATGTCATTGCTGTTAGTTGCATTAATCTTAGGGAAGAGGAAGAGCAGCTTCTTTCTGGTCCCCAGGAGGATTCTCGAGCTTCAGAAGCATCAGGACAAGCTGTGCAAGAAGAAGAAGACGAGAGGATGATTTTGCAGAAGATTCCCTTGATGAAAAAATTGACAGAAATCGTGGTCAGATGTGGGTTGAAAAATATAAGGAATGATGTGGAACGATGCTTGTCACTGTGTGTGGAGGAAAGAATGAGGGGACTAATAAATAATTTGATTGGATTGTCAAAGCAGCGAGTGGATGCTCAGAAACCAAGATGCCACACTATTACTACCTCGAATGTTCAACTGCAAATTATGAATCTCAATTTGGCAGCTAGGAAAGAATGGCAGGTGGAGGAACAAGCGGTCCAGAAGCTTAGTGAACCTGATGTTAACAATGGAGTCAACCACAGTAAGGACAAAGATCAAGGTTGTTCTAAATTGTTTAAGGCAAATAAAGAAGAAGATGATAAAATGAGTACAACAGCAGCAAATGTTGCGGCCCTTGCTGCTGTTGGAGGAGATGACATGTTGTCAAAATGGAAACTTATCGCTGAGCGAGCCAGGAAAAAGCGTGAAGGTGGGTTTAATGCTCCATCTGTGTCCCAGGATGTGAACCACAAGCCCACAACAGCGGGAAGAATTATGATGTACAATCAAGTAGCAGAGAAAATGCGGGATGGAGCTGGGACTATAAGAAATTTTGGAGAAAACCAAGTTGTCATGCCCCAAACAAGGGTGGTGCGTAGTATATCAGTAAAAGATGTGATTGCTGTTCTAGAACGGGAACCTTGGATGTCAAAGTCTCCTCTGACGTATCTCTTATATGAGAGAAACCGTTCTGATATCACTGTTGAAGACTCCAAATTGCTAAATACAGTGCCTATCATATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

895

Amino Acids

98.74

Weight (kDa)

8.46

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 175 - 235 3e-10 RCD1-SRO-TAF4 (RST) plant domain
TAF4 PF05236 586 - 870 1.9e-61 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2131
Acc36I ACCTGC 4 cut(s) 782, 886, 1042, 2131
AccI GTMKAC 2 cut(s) 68, 1332
AccII CGCG 1 cut(s) 1011
AccIII TCCGGA 1 cut(s) 629
AciI CCGC 8 cut(s) 401, 1069, 1125, 1259, 2156, 2291, 2426, 2467
AclI AACGTT 1 cut(s) 1253
AclWI GGATC 2 cut(s) 806, 1231
AcsI RAATTY 7 cut(s) 186, 455, 1189, 1300, 1384, 1602, 2491
AcuI CTGAAG 2 cut(s) 596, 1824
AdeI CACNNNGTG 1 cut(s) 1988
AfaI GTAC 4 cut(s) 124, 1056, 2272, 2444
AfiI CCNNNNNNNGG 4 cut(s) 482, 2206, 2526, 2527
AflIII ACRYGT 2 cut(s) 658, 2319
AhdI GACNNNNNGTC 1 cut(s) 2323
AjiI CACGTC 1 cut(s) 659
AjnI CCWGG 7 cut(s) 30, 162, 1441, 1636, 1821, 2354, 2397
AjuI GAANNNNNNNTTGG 2 cut(s) 2102, 2134
AloI GAACNNNNNNTCC 2 cut(s) 2142, 2174
Alw26I GTCTC 2 cut(s) 564, 2601
AlwI GGATC 2 cut(s) 806, 1231
Ama87I CYCGRG 1 cut(s) 1833
Aor13HI TCCGGA 1 cut(s) 629
AoxI GGCC 3 cut(s) 24, 1582, 2292
ApoI RAATTY 7 cut(s) 186, 455, 1189, 1300, 1384, 1602, 2491
AseI ATTAAT 1 cut(s) 1782
Asp700I GAANNNNTTC 1 cut(s) 2629
AspLEI GCGC 2 cut(s) 845, 1013
AspS9I GGNCC 5 cut(s) 1340, 1583, 1817, 2158, 2293
AsuC2I CCSGG 1 cut(s) 1337
AsuHPI GGTGA 1 cut(s) 344
AsuNHI GCTAGC 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 1833
AvaII GGWCC 3 cut(s) 1340, 1817, 2158
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BauI CACGAG 1 cut(s) 561
BbsI GAAGAC 3 cut(s) 987, 1881, 2655
BbvCI CCTCAGC 2 cut(s) 880, 1039
BccI CCATC 5 cut(s) 161, 538, 937, 2395, 2465
BciT130I CCWGG 7 cut(s) 32, 164, 1443, 1638, 1823, 2356, 2399
BciVI GTATCC 1 cut(s) 1180
BclI TGATCA 2 cut(s) 501, 1360
BcnI CCSGG 1 cut(s) 1337
BcoDI GTCTC 2 cut(s) 564, 2601
BfaI CTAG 4 cut(s) 159, 2127, 2570, 2686
BfoI RGCGCY 1 cut(s) 846
BfuAI ACCTGC 4 cut(s) 782, 886, 1042, 2131
BfuI GTATCC 1 cut(s) 1180
BglI GCCNNNNNGGC 1 cut(s) 32
BlpI GCTNAGC 1 cut(s) 2346
Bme1390I CCNGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2356, 2399
Bme18I GGWCC 3 cut(s) 1340, 1817, 2158
BmeRI GACNNNNNGTC 1 cut(s) 2323
BmeT110I CYCGRG 1 cut(s) 1833
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 5 cut(s) 1340, 1583, 1817, 2158, 2293
BmiI GGNNCC 4 cut(s) 243, 1341, 1819, 2580
BmrFI CCNGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2356, 2399
BmsI GCATC 7 cut(s) 666, 1052, 1173, 1856, 1964, 2041, 2057
BmtI GCTAGC 1 cut(s) 162
BpiI GAAGAC 3 cut(s) 987, 1881, 2655
BpmI CTGGAG 4 cut(s) 260, 1620, 1635, 1743
Bpu10I CCTNAGC 2 cut(s) 880, 1039
Bpu1102I GCTNAGC 1 cut(s) 2346
BpuMI CCSGG 1 cut(s) 1337
BsaJI CCNNGG 6 cut(s) 770, 1336, 1637, 1821, 2397, 2582
BsaWI WCCGGW 1 cut(s) 629
BsaXI ACNNNNNCTCC 4 cut(s) 799, 829, 860, 890
Bsc4I CCNNNNNNNGG 4 cut(s) 482, 2206, 2526, 2527
Bse1I ACTGG 4 cut(s) 243, 742, 955, 1268
Bse3DI GCAATG 3 cut(s) 45, 261, 1764
BseAI TCCGGA 1 cut(s) 629
BseBI CCWGG 7 cut(s) 32, 164, 1443, 1638, 1823, 2356, 2399
BseDI CCNNGG 6 cut(s) 770, 1336, 1637, 1821, 2397, 2582
BseGI GGATG 8 cut(s) 172, 780, 1043, 1890, 2056, 2407, 2476, 2592
BseLI CCNNNNNNNGG 4 cut(s) 482, 2206, 2526, 2527
BseMI GCAATG 3 cut(s) 45, 261, 1764
BseMII CTCAG 6 cut(s) 288, 694, 894, 1053, 2069, 2337
BseNI ACTGG 4 cut(s) 243, 742, 955, 1268
BseRI GAGGAG 5 cut(s) 868, 1027, 1533, 2325, 2589
BseYI CCCAGC 2 cut(s) 75, 2477
BsgI GTGCAG 5 cut(s) 194, 195, 810, 914, 988
Bsh1236I CGCG 1 cut(s) 1011
BshFI GGCC 3 cut(s) 26, 1584, 2294
BsiHKCI CYCGRG 1 cut(s) 1833
BsiSI CCGG 2 cut(s) 630, 1336
BslFI GGGAC 5 cut(s) 1353, 1803, 2022, 2380, 2494
BslI CCNNNNNNNGG 4 cut(s) 482, 2206, 2526, 2527
BsmAI GTCTC 2 cut(s) 564, 2601
BsmFI GGGAC 5 cut(s) 1353, 1803, 2022, 2380, 2494
BsmI GAATGC 3 cut(s) 226, 981, 1474
BsnI GGCC 3 cut(s) 26, 1584, 2294
BsoBI CYCGRG 1 cut(s) 1833
Bsp13I TCCGGA 1 cut(s) 629
Bsp1407I TGTACA 1 cut(s) 2442
Bsp143I GATC 9 cut(s) 334, 480, 501, 683, 811, 1223, 1348, 1360, 2215
Bsp1720I GCTNAGC 1 cut(s) 2346
BspACI CCGC 8 cut(s) 401, 1069, 1125, 1259, 2156, 2291, 2426, 2467
BspANI GGCC 3 cut(s) 26, 1584, 2294
BspCNI CTCAG 6 cut(s) 289, 693, 893, 1052, 2068, 2338
BspEI TCCGGA 1 cut(s) 629
BspFNI CGCG 1 cut(s) 1011
BspLI GGNNCC 4 cut(s) 243, 1341, 1819, 2580
BspMI ACCTGC 4 cut(s) 782, 886, 1042, 2131
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 2 cut(s) 806, 1231
BspQI GCTCTTC 1 cut(s) 1794
BsrDI GCAATG 3 cut(s) 45, 261, 1764
BsrGI TGTACA 1 cut(s) 2442
BsrI ACTGG 4 cut(s) 243, 742, 955, 1268
BssECI CCNNGG 6 cut(s) 770, 1336, 1637, 1821, 2397, 2582
BssMI GATC 9 cut(s) 334, 480, 501, 683, 811, 1223, 1348, 1360, 2215
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 2582
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 7 cut(s) 32, 164, 1443, 1638, 1823, 2356, 2399
Bst6I CTCTTC 2 cut(s) 1788, 1794
BstAPI GCANNNNNTGC 2 cut(s) 223, 2288
BstAUI TGTACA 1 cut(s) 2442
BstC8I GCNNGC 5 cut(s) 160, 584, 722, 729, 2352
BstDEI CTNAG 8 cut(s) 297, 680, 880, 1039, 1787, 2055, 2168, 2346
BstDSI CCRYGG 1 cut(s) 770
BstF5I GGATG 8 cut(s) 172, 780, 1043, 1890, 2056, 2407, 2476, 2592
BstFNI CGCG 1 cut(s) 1011
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 2 cut(s) 845, 1013
BstKTI GATC 9 cut(s) 337, 483, 504, 686, 814, 1226, 1351, 1363, 2218
BstMAI GTCTC 2 cut(s) 564, 2601
BstMBI GATC 9 cut(s) 334, 480, 501, 683, 811, 1223, 1348, 1360, 2215
BstNI CCWGG 7 cut(s) 32, 164, 1443, 1638, 1823, 2356, 2399
BstNSI RCATGY 1 cut(s) 2323
BstSCI CCNGG 8 cut(s) 30, 162, 1335, 1441, 1636, 1821, 2354, 2397
BstUI CGCG 1 cut(s) 1011
BstV2I GAAGAC 3 cut(s) 987, 1881, 2655
BstX2I RGATCY 1 cut(s) 1223
BstXI CCANNNNNNTGG 1 cut(s) 1275
BstYI RGATCY 1 cut(s) 1223
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 3 cut(s) 26, 1584, 2294
BtgI CCRYGG 1 cut(s) 770
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 8 cut(s) 172, 780, 1043, 1890, 2056, 2407, 2476, 2592
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 7 cut(s) 93, 793, 934, 948, 1982, 2640, 2676
BveI ACCTGC 4 cut(s) 782, 886, 1042, 2131
Cac8I GCNNGC 5 cut(s) 160, 584, 722, 729, 2352
CfoI GCGC 2 cut(s) 845, 1013
Cfr13I GGNCC 5 cut(s) 1340, 1583, 1817, 2158, 2293
Csp6I GTAC 4 cut(s) 123, 1055, 2271, 2443
CviAII CATG 5 cut(s) 152, 971, 1108, 2320, 2515
CviQI GTAC 4 cut(s) 123, 1055, 2271, 2443
DdeI CTNAG 8 cut(s) 297, 680, 880, 1039, 1787, 2055, 2168, 2346
DpnI GATC 9 cut(s) 336, 482, 503, 685, 813, 1225, 1350, 1362, 2217
DpnII GATC 9 cut(s) 334, 480, 501, 683, 811, 1223, 1348, 1360, 2215
DraI TTTAAA 1 cut(s) 1482
DraIII CACNNNGTG 1 cut(s) 1988
DriI GACNNNNNGTC 1 cut(s) 2323
Eam1104I CTCTTC 2 cut(s) 1788, 1794
Eam1105I GACNNNNNGTC 1 cut(s) 2323
EarI CTCTTC 2 cut(s) 1788, 1794
Eco130I CCWWGG 1 cut(s) 2582
Eco147I AGGCCT 1 cut(s) 26
Eco32I GATATC 1 cut(s) 2638
Eco47I GGWCC 3 cut(s) 1340, 1817, 2158
Eco57I CTGAAG 2 cut(s) 596, 1824
Eco88I CYCGRG 1 cut(s) 1833
EcoO109I RGGNCCY 1 cut(s) 1583
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 7 cut(s) 30, 162, 1441, 1636, 1821, 2354, 2397
EcoRV GATATC 1 cut(s) 2638
EcoT14I CCWWGG 1 cut(s) 2582
ErhI CCWWGG 1 cut(s) 2582
FaeI CATG 5 cut(s) 155, 974, 1111, 2323, 2518
FalI AAGNNNNNCTT 4 cut(s) 1791, 1823, 1889, 1921
FaqI GGGAC 5 cut(s) 1353, 1803, 2022, 2380, 2494
FatI CATG 5 cut(s) 151, 970, 1107, 2319, 2514
FauI CCCGC 2 cut(s) 2419, 2460
FbaI TGATCA 2 cut(s) 501, 1360
FblI GTMKAC 2 cut(s) 68, 1332
FokI GGATG 8 cut(s) 179, 787, 1030, 1897, 2063, 2414, 2483, 2599
FspBI CTAG 4 cut(s) 159, 2127, 2570, 2686
GlaI GCGC 2 cut(s) 844, 1012
GsaI CCCAGC 2 cut(s) 79, 2481
GsuI CTGGAG 4 cut(s) 260, 1620, 1635, 1743
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 3 cut(s) 26, 1584, 2294
HapII CCGG 2 cut(s) 630, 1336
HhaI GCGC 2 cut(s) 845, 1013
Hin1II CATG 5 cut(s) 155, 974, 1111, 2323, 2518
Hin6I GCGC 2 cut(s) 843, 1011
HinP1I GCGC 2 cut(s) 843, 1011
HincII GTYRAC 3 cut(s) 807, 2185, 2197
HindII GTYRAC 3 cut(s) 807, 2185, 2197
HindIII AAGCTT 3 cut(s) 470, 718, 2165
HpaI GTTAAC 1 cut(s) 2185
HpaII CCGG 2 cut(s) 630, 1336
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 8 cut(s) 69, 608, 807, 1333, 2174, 2185, 2197, 2407
Hpy8I GTNNAC 8 cut(s) 69, 608, 807, 1333, 2174, 2185, 2197, 2407
HpyAV CCTTC 7 cut(s) 37, 50, 323, 828, 1410, 1512, 2363
HpyCH4IV ACGT 4 cut(s) 658, 1253, 1577, 2606
HpyF3I CTNAG 8 cut(s) 297, 680, 880, 1039, 1787, 2055, 2168, 2346
HpySE526I ACGT 4 cut(s) 658, 1253, 1577, 2606
Hsp92II CATG 5 cut(s) 155, 974, 1111, 2323, 2518
HspAI GCGC 2 cut(s) 843, 1011
Kpn2I TCCGGA 1 cut(s) 629
Ksp22I TGATCA 2 cut(s) 501, 1360
KspAI GTTAAC 1 cut(s) 2185
Kzo9I GATC 9 cut(s) 334, 480, 501, 683, 811, 1223, 1348, 1360, 2215
LguI GCTCTTC 1 cut(s) 1794
LmnI GCTCC 8 cut(s) 241, 670, 736, 1040, 1417, 1724, 2389, 2474
LweI GCATC 7 cut(s) 666, 1052, 1173, 1856, 1964, 2041, 2057
MaeI CTAG 4 cut(s) 159, 2127, 2570, 2686
MaeII ACGT 4 cut(s) 658, 1253, 1577, 2606
MaeIII GTNAC 3 cut(s) 705, 1254, 1980
MalI GATC 9 cut(s) 336, 482, 503, 685, 813, 1225, 1350, 1362, 2217
MboI GATC 9 cut(s) 334, 480, 501, 683, 811, 1223, 1348, 1360, 2215
MfeI CAATTG 2 cut(s) 384, 1079
MflI RGATCY 1 cut(s) 1223
MlyI GAGTC 3 cut(s) 1469, 2202, 2645
MmeI TCCRAC 1 cut(s) 2287
MroI TCCGGA 1 cut(s) 629
MroXI GAANNNNTTC 1 cut(s) 2629
MseI TTAA 8 cut(s) 983, 1059, 1382, 1481, 1782, 2184, 2238, 2379
MspA1I CMGCKG 3 cut(s) 79, 1125, 2426
MspI CCGG 2 cut(s) 630, 1336
MspR9I CCNGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2356, 2399
MunI CAATTG 2 cut(s) 384, 1079
Mva1269I GAATGC 3 cut(s) 226, 981, 1474
MvaI CCWGG 7 cut(s) 32, 164, 1443, 1638, 1823, 2356, 2399
MvnI CGCG 1 cut(s) 1011
NciI CCSGG 1 cut(s) 1337
NdeII GATC 9 cut(s) 334, 480, 501, 683, 811, 1223, 1348, 1360, 2215
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 5 cut(s) 155, 974, 1111, 2323, 2518
NlaIV GGNNCC 4 cut(s) 243, 1341, 1819, 2580
NmuCI GTSAC 1 cut(s) 1980
NspI RCATGY 1 cut(s) 2323
PaeR7I CTCGAG 1 cut(s) 1833
PaqCI CACCTGC 1 cut(s) 2131
PceI AGGCCT 1 cut(s) 26
PciI ACATGT 1 cut(s) 2319
PciSI GCTCTTC 1 cut(s) 1794
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 3 cut(s) 226, 981, 1474
PdmI GAANNNNTTC 1 cut(s) 2629
PfeI GAWTC 9 cut(s) 86, 205, 397, 902, 965, 1264, 1829, 1900, 2110
PleI GAGTC 3 cut(s) 1468, 2201, 2645
PpsI GAGTC 3 cut(s) 1468, 2201, 2645
PscI ACATGT 1 cut(s) 2319
PshBI ATTAAT 1 cut(s) 1782
Psp1406I AACGTT 1 cut(s) 1253
Psp6I CCWGG 7 cut(s) 30, 162, 1441, 1636, 1821, 2354, 2397
PspFI CCCAGC 2 cut(s) 75, 2477
PspGI CCWGG 7 cut(s) 30, 162, 1441, 1636, 1821, 2354, 2397
PspN4I GGNNCC 4 cut(s) 243, 1341, 1819, 2580
PspPI GGNCC 5 cut(s) 1340, 1583, 1817, 2158, 2293
PsuI RGATCY 1 cut(s) 1223
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 4 cut(s) 124, 1056, 2272, 2444
RsaNI GTAC 4 cut(s) 123, 1055, 2271, 2443
SapI GCTCTTC 1 cut(s) 1794
SaqAI TTAA 8 cut(s) 983, 1059, 1382, 1481, 1782, 2184, 2238, 2379
Sau3AI GATC 9 cut(s) 334, 480, 501, 683, 811, 1223, 1348, 1360, 2215
Sau96I GGNCC 5 cut(s) 1340, 1583, 1817, 2158, 2293
SchI GAGTC 3 cut(s) 1469, 2202, 2645
ScrFI CCNGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2356, 2399
SfaNI GCATC 7 cut(s) 666, 1052, 1173, 1856, 1964, 2041, 2057
Sfr274I CTCGAG 1 cut(s) 1833
SinI GGWCC 3 cut(s) 1340, 1817, 2158
SlaI CTCGAG 1 cut(s) 1833
SmlI CTYRAG 1 cut(s) 1833
SmoI CTYRAG 1 cut(s) 1833
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 8 cut(s) 401, 1069, 1125, 1259, 2156, 2291, 2426, 2467
SspMI CTAG 4 cut(s) 159, 2127, 2570, 2686
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 8 cut(s) 30, 162, 1335, 1441, 1636, 1821, 2354, 2397
StyI CCWWGG 1 cut(s) 2582
TaiI ACGT 4 cut(s) 661, 1256, 1580, 2609
TaqI TCGA 5 cut(s) 184, 190, 395, 1834, 2087
TaqII GACCGA 1 cut(s) 948
TatI WGTACW 2 cut(s) 2270, 2442
TauI GCSGC 2 cut(s) 1072, 2294
TfiI GAWTC 9 cut(s) 86, 205, 397, 902, 965, 1264, 1829, 1900, 2110
Tru1I TTAA 8 cut(s) 983, 1059, 1382, 1481, 1782, 2184, 2238, 2379
Tru9I TTAA 8 cut(s) 983, 1059, 1382, 1481, 1782, 2184, 2238, 2379
TscAI CASTG 7 cut(s) 100, 793, 934, 955, 1989, 2647, 2676
TseFI GTSAC 1 cut(s) 1980
Tsp45I GTSAC 1 cut(s) 1980
TspGWI ACGGA 3 cut(s) 635, 787, 904
TspRI CASTG 7 cut(s) 100, 793, 934, 955, 1989, 2647, 2676
VpaK11BI GGWCC 3 cut(s) 1340, 1817, 2158
VspI ATTAAT 1 cut(s) 1782
XapI RAATTY 7 cut(s) 186, 455, 1189, 1300, 1384, 1602, 2491
XbaI TCTAGA 1 cut(s) 2569
XceI RCATGY 1 cut(s) 2323
XhoI CTCGAG 1 cut(s) 1833
XmiI GTMKAC 2 cut(s) 68, 1332
XmnI GAANNNNTTC 1 cut(s) 2629
XspI CTAG 4 cut(s) 159, 2127, 2570, 2686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.