Rh7BG289200

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001817
Physical Location & Seq
Forward (+)
27182068 .. 27189269
7202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG289200.1

Sequence Viewer

Length: 2868 bp
ATGGACCCGTCGATTATGAAGAAGCTCTTGGAAGACGATGAGGATGAAACAATGCATTCGGGGGCGGATGTGGAGGCCTTTCAGGCGGCCCTGAATAGGGACATTGAAGGAGATGTGTCTGCTTCTCAGCGGTCTGATTCAGACTCTGCAGTTTTGTCTCAAGGAAGCAATAATACTTCTAGTCAATCATTACCACAGTTGCATACTGCTAGCCAGGATGAAAGTACTGCTGGTCAAATTCAGCATGACCAAAATATTGCACAACAGCGAGAAATGCAGTCATCAATGGAGTTAAAGCCACAACGTTCCATCTCTGAGAATATGCCACAACAGAATGATACATCGCAGGAACTTAATCATTTTACTTTGCCCCAGAAGCAACCCCACAGTGATCTTCAGCAAGGGAAAGGAGATCAAAAACCTCTCCAGACTGGAATGTTGATGTCTGGAAAAAATCCAGTGTCAACACAGGAGCAGGACTTAACTCCTAAACCAGAAAATGAATCTCAGTATGTAAAGCTTCAGAAGATGAGTAGTCAACAGGCAATGACCACGGAGCAGCCAAGCACCCCGATGAATCGCAGTAAACAAGTACCATTTGGTCTGTTACTACCTGTCTTATTGCCTCAACTTGATAAAGACAGAGCCATGCAACTTACAACTCTTTTTAGCAAACTGAAGAACAATGAAATCTCCAAAGATGCTTTTGTCCGACACATTAGAAGTGTTGTTGGGGACCAGATGCTCAAGATGGCAGTACATAAAGTACAGACACAGCCTGCTCTTAAACAACAGTTGACGCCTCAGGCTTCATTGCAGCAGCAACCTCCTAGGATGCCATCTATTAGTGCAGGTGCTACCCAGTTCACTGATCCTCGTTTTGCAATTCATCAGAGAGGTGCGAACCCTTCCACAGACCCATCGCACATTCCCACAGTTCACGTGCAGACTGATTCAAGCCATTCGGCCATTGAAAACAATGCCAAAAAATTGCGGGAAGCAGAACGTCAGTCAGATTCTCATGCAATGCAAGTAAATCAGATGTCTTCTTCCAGCACAGGAGCTGCCAATCAAGAAAGGGAGCGGTCCTCGGTTGCTATGCAAGTACATAACAAGCAGCAGCAACAGCAACTGCACTACCCCCAATCATCCTTTGCCATGTATGGATCTACTGGTGGTAATTATCATCCGTATTCAGGGACAAATGTCAATACAATGCCTCTCAAACAGCAATCACATGACTCTCATTTGAGGCAAATTCCTCAACATCAAAGCATGGGCTCAGCTCAGCCAGGTGGGGTGGAAGCCCAGGGAACAAACATCATGAGTGTGCCCAAATTGGAGAGGCAAAATTCTATGAATGACCCTAGCAGACAGCAGGGTGGATCTCTTCCTCACTTCACAAATAATTCGACTTTACAACAAAATCCAGTTCCTTGGCAGTCTTCAAATAAAGAGCAGATTTCTGGCCCTTTATCATCAATGCCTTATGTAAAACAGGAACCCACTGACCAGAGTGCTGAGCAGCAGCACAAGACCCCGCTATCTAATTCTCAGCGTTTGCCTTATGCTTCTTCTGTGCAACATGAACAAGGAAATGCATCACCTGGAATTTCAATGGACGAGTCTTTAGAGAAGCAGTCTTCAAGAATGGGATTTTCAAACACAGGGCCCTCTGGGAGCATGGTGCCTTCGTCATCTACAAGCACAGGGCCCTTGAATCCTGTTTCTTCTTCCACAACGACGCAAGCTGATCCTAACTTAAGCTCTCGGATACCTACTGGCACTTCTCCTGCTGGGATTAATAATAGAGTAGCTGCAAAAAAGACTTCTGTTGGCCAAAAGAAGCCTAGTGAAGCACTTGGTTCTTCACCACCGCCTTCAAGTAAGAAGCAAAAAGTATCTGGGGCTTTTTTGGATCAAAGCATTGAACAACTCAATGATGTCACAGCTGTTAGTGGAGTTAATCTAAGGGAAGAGGAGGAGCAGCTGTTTTCTGGGCCCAAGGATGACGGTCGAGCTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAAGAAGAAAGGCTGATTTTGCAGAAGGCTCCCTTGCAGAAAAAATTGGCAGAAATCATGTTCAGATGTGGTTTGAAAAGTATAAGCAATGATGTGGAACGATGCTTGTCACTGTGCGTGGAGGAAAGAATGAGGGGACTGATAAATAATTTGATAAGACTGTCAAAGCAGCGGGTTGATGCTGAGAAACCAAAACACCACACCATCATCACCTCTGATGTTCGGCAACAAATTTTAAATCAGAACAAGAAAGCTAAGGAAGAATGGGAAAAGAAGCAAGCTGAGGCAGAAAAGGTCCGGAAGCTTAATGAACCTGAGGTTAGCAATGGAGTTGACGGTGATAAAGACAGAGATGAAGGTCGTTCTAAATCATTTAAGGTAAACAAAGAAGAAGATGACAAAATGAGGACAACAGCAGCAAATGTTGCTGCCCGTGCTGCTGTTGGAGGAGATGACATGTTGTCAAAATGGCAACTTATGGCTGAACAAGCTCGCCAAAAACGTGAAGGTGGGAGTGATGTGGCATCTGGGTCTCAGCCAGGTAAAGATGTAAATCGCAAGCCTACATCAGCAGCTGGAAGAATTATGAAGGACAATCAAGAAGTAGAAAAAAGAGGGGGTGCAGCTCCTGTTTCTGCAGCTGGGACTGTTAGAAAATTTGGGAAAAACCAATTTATTGTGCCCCAGACGAGGGTGGCTCGGAGTATTTCTGTCAAGGATGTGATTTCTGTTCTGGAAAGGGAACCTCAAATGTCCAAGTCACCTCTGATATATCGCTTGTATGAGAGAAACCAATCTGACTCTGCGGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

955

Amino Acids

104.96

Weight (kDa)

8.52

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 193 - 257 2e-20 RCD1-SRO-TAF4 (RST) plant domain
TAF4 PF05236 646 - 944 2.4e-82 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 842
Acc36I ACCTGC 1 cut(s) 842
AccB1I GGYRCC 1 cut(s) 1687
AccBSI CCGCTC 1 cut(s) 1084
AccIII TCCGGA 1 cut(s) 2349
AciI CCGC 9 cut(s) 65, 86, 130, 994, 1084, 1541, 1877, 2224, 2858
AclI AACGTT 1 cut(s) 304
AclWI GGATC 5 cut(s) 866, 1174, 1393, 1748, 1926
AcoI YGGCCR 2 cut(s) 966, 1837
AcsI RAATTY 6 cut(s) 237, 1257, 1351, 1611, 2283, 2708
AcuI CTGAAG 4 cut(s) 380, 506, 698, 2007
AcvI CACGTG 1 cut(s) 943
AcyI GRCGYC 1 cut(s) 800
AfaI GTAC 5 cut(s) 226, 594, 759, 768, 1107
AfiI CCNNNNNNNGG 5 cut(s) 96, 97, 1196, 2742, 2743
AflII CTTAAG 1 cut(s) 1762
AflIII ACRYGT 1 cut(s) 2508
AhdI GACNNNNNGTC 1 cut(s) 2512
AjnI CCWGG 5 cut(s) 213, 1291, 1308, 1606, 2590
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
Alw26I GTCTC 2 cut(s) 162, 2589
AlwI GGATC 5 cut(s) 866, 1174, 1393, 1748, 1926
AlwNI CAGNNNCTG 5 cut(s) 146, 1064, 1132, 2627, 2681
Aor13HI TCCGGA 1 cut(s) 2349
AoxI GGCC 8 cut(s) 75, 87, 966, 1468, 1670, 1712, 1837, 2000
ApaI GGGCCC 3 cut(s) 1674, 1716, 2004
ApoI RAATTY 6 cut(s) 237, 1257, 1351, 1611, 2283, 2708
AseI ATTAAT 1 cut(s) 1803
AspA2I CCTAGG 1 cut(s) 830
AsuHPI GGTGA 5 cut(s) 1596, 1863, 2254, 2402, 2805
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 4 cut(s) 4, 736, 1086, 2347
AvrII CCTAGG 1 cut(s) 830
AxyI CCTNAGG 2 cut(s) 804, 2367
BaeGI GKGCMC 5 cut(s) 1335, 1674, 1716, 2004, 2736
BalI TGGCCA 1 cut(s) 1839
BanI GGYRCC 1 cut(s) 1687
BanII GRGCYC 4 cut(s) 1283, 1674, 1716, 2004
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BbrPI CACGTG 1 cut(s) 943
BbsI GAAGAC 4 cut(s) 39, 1038, 1437, 1635
BbvCI CCTCAGC 1 cut(s) 2334
BccI CCATC 5 cut(s) 317, 745, 847, 928, 2264
BciT130I CCWGG 5 cut(s) 215, 1293, 1310, 1608, 2592
BciVI GTATCC 1 cut(s) 1767
BcoDI GTCTC 2 cut(s) 162, 2589
BfaI CTAG 5 cut(s) 180, 210, 831, 1368, 1851
BfmI CTRYAG 2 cut(s) 147, 2688
BfrI CTTAAG 1 cut(s) 1762
BfuAI ACCTGC 1 cut(s) 842
BfuI GTATCC 1 cut(s) 1767
BglI GCCNNNNNGGC 1 cut(s) 83
BlnI CCTAGG 1 cut(s) 830
BlpI GCTNAGC 3 cut(s) 1282, 1287, 1521
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 5 cut(s) 215, 1293, 1310, 1608, 2592
Bme18I GGWCC 4 cut(s) 4, 736, 1086, 2347
BmeRI GACNNNNNGTC 1 cut(s) 2512
BmiI GGNNCC 9 cut(s) 6, 737, 1503, 1672, 1689, 1714, 2002, 2082, 2796
BmrFI CCNGG 5 cut(s) 215, 1293, 1310, 1608, 2592
BmrI ACTGGG 1 cut(s) 856
BmsI GCATC 8 cut(s) 691, 732, 825, 1610, 2039, 2144, 2221, 2585
BmtI GCTAGC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 856
BoxI GACNNNNGTC 1 cut(s) 1205
BpiI GAAGAC 4 cut(s) 39, 1038, 1437, 1635
BplI GAGNNNNNCTC 4 cut(s) 1073, 1105, 2734, 2766
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 2 cut(s) 2307, 2334
Bpu1102I GCTNAGC 3 cut(s) 1282, 1287, 1521
BpuEI CTTGAG 2 cut(s) 144, 731
BsaAI YACGTR 1 cut(s) 943
BsaBI GATNNNNATC 1 cut(s) 2604
BsaHI GRCGYC 1 cut(s) 800
BsaI GGTCTC 1 cut(s) 2589
BsaJI CCNNGG 7 cut(s) 552, 830, 1089, 1308, 1309, 1436, 2004
BsaWI WCCGGW 1 cut(s) 2349
BsaXI ACNNNNNCTCC 2 cut(s) 1976, 2006
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 97, 1196, 2742, 2743
Bse1I ACTGG 6 cut(s) 436, 458, 862, 1177, 1430, 1786
Bse21I CCTNAGG 2 cut(s) 804, 2367
Bse3DI GCAATG 5 cut(s) 552, 812, 1032, 2146, 2383
Bse8I GATNNNNATC 1 cut(s) 2604
BseAI TCCGGA 1 cut(s) 2349
BseBI CCWGG 5 cut(s) 215, 1293, 1310, 1608, 2592
BseDI CCNNGG 7 cut(s) 552, 830, 1089, 1308, 1309, 1436, 2004
BseGI GGATG 8 cut(s) 49, 73, 223, 840, 1148, 1186, 2014, 2776
BseJI GATNNNNATC 1 cut(s) 2604
BseLI CCNNNNNNNGG 5 cut(s) 96, 97, 1196, 2742, 2743
BseMI GCAATG 5 cut(s) 552, 812, 1032, 2146, 2383
BseNI ACTGG 6 cut(s) 436, 458, 862, 1177, 1430, 1786
BseRI GAGGAG 3 cut(s) 1994, 1997, 2514
BseSI GKGCMC 5 cut(s) 1335, 1674, 1716, 2004, 2736
BseYI CCCAGC 2 cut(s) 1796, 2693
BsgI GTGCAG 4 cut(s) 870, 965, 1118, 2694
Bsh1285I CGRYCG 1 cut(s) 2017
BshFI GGCC 8 cut(s) 77, 89, 968, 1470, 1672, 1714, 1839, 2002
BshNI GGYRCC 1 cut(s) 1687
BsiEI CGRYCG 1 cut(s) 2017
BsiSI CCGG 1 cut(s) 2350
BslFI GGGAC 5 cut(s) 113, 749, 1213, 2202, 2710
BslI CCNNNNNNNGG 5 cut(s) 96, 97, 1196, 2742, 2743
BsmAI GTCTC 2 cut(s) 162, 2589
BsmFI GGGAC 5 cut(s) 113, 749, 1213, 2202, 2710
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 8 cut(s) 77, 89, 968, 1470, 1672, 1714, 1839, 2002
Bso31I GGTCTC 1 cut(s) 2589
Bsp120I GGGCCC 3 cut(s) 1670, 1712, 2000
Bsp1286I GDGCHC 6 cut(s) 1283, 1335, 1674, 1716, 2004, 2736
Bsp13I TCCGGA 1 cut(s) 2349
Bsp143I GATC 7 cut(s) 391, 412, 871, 1166, 1385, 1753, 1918
Bsp1720I GCTNAGC 3 cut(s) 1282, 1287, 1521
BspACI CCGC 9 cut(s) 65, 86, 130, 994, 1084, 1541, 1877, 2224, 2858
BspANI GGCC 8 cut(s) 77, 89, 968, 1470, 1672, 1714, 1839, 2002
BspEI TCCGGA 1 cut(s) 2349
BspHI TCATGA 1 cut(s) 1323
BspLI GGNNCC 9 cut(s) 6, 737, 1503, 1672, 1689, 1714, 2002, 2082, 2796
BspMAI CTGCAG 2 cut(s) 151, 2692
BspMI ACCTGC 1 cut(s) 842
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 5 cut(s) 866, 1174, 1393, 1748, 1926
BspT107I GGYRCC 1 cut(s) 1687
BspTI CTTAAG 1 cut(s) 1762
BspTNI GGTCTC 1 cut(s) 2589
BsrBI CCGCTC 1 cut(s) 1084
BsrDI GCAATG 5 cut(s) 552, 812, 1032, 2146, 2383
BsrI ACTGG 6 cut(s) 436, 458, 862, 1177, 1430, 1786
BssECI CCNNGG 7 cut(s) 552, 830, 1089, 1308, 1309, 1436, 2004
BssMI GATC 7 cut(s) 391, 412, 871, 1166, 1385, 1753, 1918
BssNI GRCGYC 1 cut(s) 800
BssT1I CCWWGG 3 cut(s) 830, 1436, 2004
Bst2UI CCWGG 5 cut(s) 215, 1293, 1310, 1608, 2592
Bst4CI ACNGT 9 cut(s) 198, 389, 795, 937, 2015, 2166, 2214, 2390, 2701
Bst6I CTCTTC 3 cut(s) 1395, 1971, 2032
BstACI GRCGYC 1 cut(s) 800
BstAFI CTTAAG 1 cut(s) 1762
BstAPI GCANNNNNTGC 1 cut(s) 2477
BstBAI YACGTR 1 cut(s) 943
BstC8I GCNNGC 6 cut(s) 211, 780, 1749, 2331, 2545, 2612
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 8 cut(s) 49, 73, 223, 840, 1148, 1186, 2014, 2776
BstKTI GATC 7 cut(s) 394, 415, 874, 1169, 1388, 1756, 1921
BstMAI GTCTC 2 cut(s) 162, 2589
BstMBI GATC 7 cut(s) 391, 412, 871, 1166, 1385, 1753, 1918
BstMCI CGRYCG 1 cut(s) 2017
BstNI CCWGG 5 cut(s) 215, 1293, 1310, 1608, 2592
BstNSI RCATGY 1 cut(s) 2512
BstPAI GACNNNNGTC 1 cut(s) 1205
BstSCI CCNGG 5 cut(s) 213, 1291, 1308, 1606, 2590
BstSFI CTRYAG 2 cut(s) 147, 2688
BstSLI GKGCMC 5 cut(s) 1335, 1674, 1716, 2004, 2736
BstV2I GAAGAC 4 cut(s) 39, 1038, 1437, 1635
BstX2I RGATCY 2 cut(s) 1166, 1385
BstXI CCANNNNNNTGG 1 cut(s) 1437
BstYI RGATCY 2 cut(s) 1166, 1385
Bsu36I CCTNAGG 2 cut(s) 804, 2367
BsuI GTATCC 1 cut(s) 1767
BsuRI GGCC 8 cut(s) 77, 89, 968, 1470, 1672, 1714, 1839, 2002
BtgI CCRYGG 1 cut(s) 552
BtgZI GCGATG 2 cut(s) 327, 906
BtsCI GGATG 8 cut(s) 49, 73, 223, 840, 1148, 1186, 2014, 2776
BtsIMutI CAGTG 5 cut(s) 394, 465, 867, 1506, 2162
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 6 cut(s) 211, 780, 1749, 2331, 2545, 2612
CaiI CAGNNNCTG 5 cut(s) 146, 1064, 1132, 2627, 2681
CciI TCATGA 1 cut(s) 1323
CseI GACGC 2 cut(s) 808, 1753
Csp6I GTAC 5 cut(s) 225, 593, 758, 767, 1106
CviQI GTAC 5 cut(s) 225, 593, 758, 767, 1106
DpnI GATC 7 cut(s) 393, 414, 873, 1168, 1387, 1755, 1920
DpnII GATC 7 cut(s) 391, 412, 871, 1166, 1385, 1753, 1918
DraI TTTAAA 1 cut(s) 2289
DriI GACNNNNNGTC 1 cut(s) 2512
EaeI YGGCCR 2 cut(s) 966, 1837
Eam1104I CTCTTC 3 cut(s) 1395, 1971, 2032
Eam1105I GACNNNNNGTC 1 cut(s) 2512
EarI CTCTTC 3 cut(s) 1395, 1971, 2032
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 3 cut(s) 830, 1436, 2004
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 4 cut(s) 1283, 1674, 1716, 2004
Eco31I GGTCTC 1 cut(s) 2589
Eco47I GGWCC 4 cut(s) 4, 736, 1086, 2347
Eco57I CTGAAG 4 cut(s) 380, 506, 698, 2007
Eco72I CACGTG 1 cut(s) 943
Eco81I CCTNAGG 2 cut(s) 804, 2367
EcoO109I RGGNCCY 4 cut(s) 1670, 1671, 1712, 1713
EcoRII CCWGG 5 cut(s) 213, 1291, 1308, 1606, 2590
EcoT14I CCWWGG 3 cut(s) 830, 1436, 2004
EcoT22I ATGCAT 2 cut(s) 57, 1603
EcoT38I GRGCYC 4 cut(s) 1283, 1674, 1716, 2004
ErhI CCWWGG 3 cut(s) 830, 1436, 2004
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 2069, 2101
FaqI GGGAC 5 cut(s) 113, 749, 1213, 2202, 2710
FauI CCCGC 4 cut(s) 987, 1548, 2217, 2851
FokI GGATG 8 cut(s) 56, 80, 230, 847, 1135, 1173, 2021, 2783
FriOI GRGCYC 4 cut(s) 1283, 1674, 1716, 2004
FspBI CTAG 5 cut(s) 180, 210, 831, 1368, 1851
GsaI CCCAGC 2 cut(s) 1800, 2697
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 8 cut(s) 77, 89, 968, 1470, 1672, 1714, 1839, 2002
HapII CCGG 1 cut(s) 2350
HgaI GACGC 2 cut(s) 808, 1753
Hin1I GRCGYC 1 cut(s) 800
HincII GTYRAC 4 cut(s) 465, 539, 798, 2386
HindII GTYRAC 4 cut(s) 465, 539, 798, 2386
HindIII AAGCTT 2 cut(s) 518, 2354
HpaII CCGG 1 cut(s) 2350
HphI GGTGA 5 cut(s) 1596, 1863, 2254, 2402, 2805
Hpy166II GTNNAC 8 cut(s) 465, 539, 587, 798, 867, 940, 2386, 2434
Hpy8I GTNNAC 8 cut(s) 465, 539, 587, 798, 867, 940, 2386, 2434
Hpy99I CGWCG 2 cut(s) 13, 1747
HpyAV CCTTC 8 cut(s) 101, 918, 1701, 1890, 2071, 2402, 2552, 2635
HpyCH4III ACNGT 9 cut(s) 198, 389, 795, 937, 2015, 2166, 2214, 2390, 2701
HpyCH4IV ACGT 4 cut(s) 304, 942, 1006, 2554
HpySE526I ACGT 4 cut(s) 304, 942, 1006, 2554
Hsp92I GRCGYC 1 cut(s) 800
Kpn2I TCCGGA 1 cut(s) 2349
Kzo9I GATC 7 cut(s) 391, 412, 871, 1166, 1385, 1753, 1918
LmnI GCTCC 8 cut(s) 472, 556, 1061, 1081, 1680, 1984, 2086, 2683
LweI GCATC 8 cut(s) 691, 732, 825, 1610, 2039, 2144, 2221, 2585
MaeI CTAG 5 cut(s) 180, 210, 831, 1368, 1851
MaeII ACGT 4 cut(s) 304, 942, 1006, 2554
MaeIII GTNAC 4 cut(s) 606, 1945, 2160, 2811
MalI GATC 7 cut(s) 393, 414, 873, 1168, 1387, 1755, 1920
MbiI CCGCTC 1 cut(s) 1084
MboI GATC 7 cut(s) 391, 412, 871, 1166, 1385, 1753, 1918
MflI RGATCY 2 cut(s) 1166, 1385
MhlI GDGCHC 6 cut(s) 1283, 1335, 1674, 1716, 2004, 2736
MlsI TGGCCA 1 cut(s) 1839
MluNI TGGCCA 1 cut(s) 1839
MlyI GAGTC 4 cut(s) 137, 1235, 1634, 2846
MmeI TCCRAC 2 cut(s) 736, 2476
Mox20I TGGCCA 1 cut(s) 1839
Mph1103I ATGCAT 2 cut(s) 57, 1603
MroI TCCGGA 1 cut(s) 2349
MscI TGGCCA 1 cut(s) 1839
MslI CAYNNNNRTG 2 cut(s) 572, 1328
Msp20I TGGCCA 1 cut(s) 1839
MspA1I CMGCKG 6 cut(s) 130, 1952, 1990, 2224, 2627, 2693
MspCI CTTAAG 1 cut(s) 1762
MspI CCGG 1 cut(s) 2350
MspR9I CCNGG 5 cut(s) 215, 1293, 1310, 1608, 2592
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 5 cut(s) 215, 1293, 1310, 1608, 2592
NdeII GATC 7 cut(s) 391, 412, 871, 1166, 1385, 1753, 1918
NheI GCTAGC 1 cut(s) 209
NlaIV GGNNCC 9 cut(s) 6, 737, 1503, 1672, 1689, 1714, 2002, 2082, 2796
NmuCI GTSAC 3 cut(s) 1945, 2160, 2811
NsiI ATGCAT 2 cut(s) 57, 1603
NspI RCATGY 1 cut(s) 2512
PagI TCATGA 1 cut(s) 1323
PaqCI CACCTGC 1 cut(s) 842
PasI CCCWGGG 1 cut(s) 1309
PceI AGGCCT 1 cut(s) 77
PciI ACATGT 1 cut(s) 2508
PcsI WCGNNNNNNNCGW 1 cut(s) 2551
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 6 cut(s) 137, 503, 577, 953, 1016, 1720
PleI GAGTC 4 cut(s) 137, 1235, 1633, 2846
PmaCI CACGTG 1 cut(s) 943
PmlI CACGTG 1 cut(s) 943
PpsI GAGTC 4 cut(s) 137, 1235, 1633, 2846
Ppu21I YACGTR 1 cut(s) 943
PscI ACATGT 1 cut(s) 2508
PshAI GACNNNNGTC 1 cut(s) 1205
PshBI ATTAAT 1 cut(s) 1803
Psp1406I AACGTT 1 cut(s) 304
Psp6I CCWGG 5 cut(s) 213, 1291, 1308, 1606, 2590
PspCI CACGTG 1 cut(s) 943
PspFI CCCAGC 2 cut(s) 1796, 2693
PspGI CCWGG 5 cut(s) 213, 1291, 1308, 1606, 2590
PspN4I GGNNCC 9 cut(s) 6, 737, 1503, 1672, 1689, 1714, 2002, 2082, 2796
PspOMI GGGCCC 3 cut(s) 1670, 1712, 2000
PstI CTGCAG 2 cut(s) 151, 2692
PstNI CAGNNNCTG 5 cut(s) 146, 1064, 1132, 2627, 2681
PsuI RGATCY 2 cut(s) 1166, 1385
PvuII CAGCTG 4 cut(s) 1952, 1990, 2627, 2693
RsaI GTAC 5 cut(s) 226, 594, 759, 768, 1107
RsaNI GTAC 5 cut(s) 225, 593, 758, 767, 1106
RseI CAYNNNNRTG 2 cut(s) 572, 1328
Sau3AI GATC 7 cut(s) 391, 412, 871, 1166, 1385, 1753, 1918
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 4 cut(s) 137, 1235, 1634, 2846
ScrFI CCNGG 5 cut(s) 215, 1293, 1310, 1608, 2592
SduI GDGCHC 6 cut(s) 1283, 1335, 1674, 1716, 2004, 2736
SfaNI GCATC 8 cut(s) 691, 732, 825, 1610, 2039, 2144, 2221, 2585
SfcI CTRYAG 2 cut(s) 147, 2688
SinI GGWCC 4 cut(s) 4, 736, 1086, 2347
SmiMI CAYNNNNRTG 2 cut(s) 572, 1328
SmlI CTYRAG 3 cut(s) 159, 746, 1762
SmoI CTYRAG 3 cut(s) 159, 746, 1762
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 9 cut(s) 65, 86, 130, 994, 1084, 1541, 1877, 2224, 2858
SspI AATATT 1 cut(s) 256
SspMI CTAG 5 cut(s) 180, 210, 831, 1368, 1851
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 5 cut(s) 213, 1291, 1308, 1606, 2590
StyI CCWWGG 3 cut(s) 830, 1436, 2004
TaaI ACNGT 9 cut(s) 198, 389, 795, 937, 2015, 2166, 2214, 2390, 2701
TaiI ACGT 4 cut(s) 307, 945, 1009, 2557
TaqI TCGA 4 cut(s) 11, 1412, 2017, 2035
TatI WGTACW 4 cut(s) 224, 757, 766, 1105
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 6 cut(s) 137, 503, 577, 953, 1016, 1720
TscAI CASTG 5 cut(s) 394, 465, 874, 1513, 2169
TseFI GTSAC 3 cut(s) 1945, 2160, 2811
Tsp45I GTSAC 3 cut(s) 1945, 2160, 2811
TspGWI ACGGA 2 cut(s) 569, 1179
TspRI CASTG 5 cut(s) 394, 465, 874, 1513, 2169
Vha464I CTTAAG 1 cut(s) 1762
VpaK11BI GGWCC 4 cut(s) 4, 736, 1086, 2347
VspI ATTAAT 1 cut(s) 1803
XapI RAATTY 6 cut(s) 237, 1257, 1351, 1611, 2283, 2708
XceI RCATGY 1 cut(s) 2512
XmaJI CCTAGG 1 cut(s) 830
XspI CTAG 5 cut(s) 180, 210, 831, 1368, 1851
ZrmI AGTACT 1 cut(s) 226
Zsp2I ATGCAT 2 cut(s) 57, 1603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.