Rh1DG091300

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001817
Physical Location & Seq
Reverse (-)
17238336 .. 17247024
8689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG091300.1

Sequence Viewer

Length: 1668 bp
ATGTATTCAAGGGCTGATGTCGAGGCCTTCCAGGCTGCCATGAATAAGGACATAGAAGGAAATGTGTCTACTTCCCAGCTGTCTGATTCACACACTGCTGTTTTCTCTCAACGAAGCAATCGTACCTCTATTCAGCCATTACAGCAGTTTCATGCTGCTAGCCAGGATGAGAGTGCAGCTTCTCGAATTCGACATAACCAAAAGATTCTGCACCAGCAAGGACTGTATTCATTTGGACTGGAGCCAAAATCACAGCAGTTCTTTGCTGATTATAGACAACAAAAATATGATACTTCTGAGGAACTCAATCAGTTTCCTTTGCTTCAAGAAGTTGATCTCCAAAAAGGACAAGGAGAACAAAATACCAGCCAGATTCTTGAAACAACTGTAATGTCGATTCTGCAGAAAAATCCAATTTCACCACAGCAGGACATAACATCTAATCCAAAAAGTGAATTTCAGTATTTGAAGCTTCCGAAGATCGGTAGTCAAAAGGAAATGATCACAGAGCAGTCAAACATCCCAATACCATCTGAGATATTACTGCCTTGCTTATTGTCTCATCTTGATAGAAACAGAGGCTTGCAACTTACCACTCTATATGGTAAACTTCAGAAAAAAGAACTTTCCAGAACTGATTTTTTCCGTCAAATAAGACGTGTTGTTGGGGAGCAGATGGTCAGATCAACAGTAATGGAAATACAGTTACAGATGAAAAGCTTGCAGCCTGCTCCTGAATGCCAGTTATCGCCTCTGGCTCAACTACCTCCATGGATGTTTTCTATCAGTGCAGGTTCTACACAGTTGACTGATCCTCTTTCATTCTCACAATATCAGAGAGGCGCTAACTCTGCCACAGACCTATCAGACATTTCCTCCTCAACTGTTCAAGTGCAGGTTGATTCAAACCATTCCGTTGTTGAAAACAGTGCTAAAAATCTGATGGACACTGGAAGACAGTCAGATTCTCATGGAATGCAATTAAGTCAAATGTCTTCTTCCTGTACACGCGCTGCTGATCCTAAAAGCAAATGCTCCTCAGCATCCACGCGAGTACTTAATGAGAAGCGGCAACAACAATTGCACTACCCACGATCATCGGTTGCCATGTATGCAAATACTAGCGGTCAGTCAGGTGGGGAAGCACAGGAAATGAACATTATTGGTGTATCCAAATTAGTTACGCAAAACTCTGTGTTAGAACCTAGTAGACTGCAGGGTGGATCTCGTTTTCACTTTACAAATAATTCAACGTTACCGCAGAATTCAGTTCCTTGGCAATCCTCAAATAAAGGACAGAATTTTGGTCTTTTGTCCTCAATGGCTTATGTAAACCGGGGACCAGATGATCAGGCTTCTGATCAACAGCAGAAACCCCCATTAAATTCACAGGGATTGCCTTCTGTTTCTGCTCCACAAGTTGAACCAGAAAATGTATTGCCTGGAATATCAACAAATGAGTCTTTTGACAAGCATTCTTTAAAATCTACAAGCATAGTGCCTTCATCAGCAGCAACAACAGTTCCCACAAAACCTGTTTCTCCTCCCATAACAACACAAGTCGATGCTAATTTCACGTTGGTTCATTCTCGTGCCGATTCCACAAACTGTAGTAAAGGGGATTTAGTGCCAGTGGAGAATGTACACACTTTGGATCGGCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

555

Amino Acids

61.29

Weight (kDa)

6.51

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 176 - 235 4.7e-12 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 782, 886
AccI GTMKAC 2 cut(s) 68, 1210
AccII CGCG 2 cut(s) 1011, 1051
AciI CCGC 3 cut(s) 1069, 1125, 1259
AclI AACGTT 1 cut(s) 1253
AclWI GGATC 4 cut(s) 806, 1013, 1231, 1662
AcsI RAATTY 5 cut(s) 186, 455, 1264, 1300, 1384
AcuI CTGAAG 1 cut(s) 596
AfaI GTAC 4 cut(s) 124, 1006, 1056, 1644
AfiI CCNNNNNNNGG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 658
AgsI TTSAA 9 cut(s) 9, 326, 380, 469, 890, 906, 923, 1251, 1424
AjiI CACGTC 1 cut(s) 659
AjnI CCWGG 3 cut(s) 30, 162, 1441
AluBI AGCT 4 cut(s) 79, 179, 472, 720
AluI AGCT 4 cut(s) 79, 179, 472, 720
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 4 cut(s) 806, 1013, 1231, 1662
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 6 cut(s) 35, 155, 176, 724, 1013, 1511
ApoI RAATTY 5 cut(s) 186, 455, 1264, 1300, 1384
AspLEI GCGC 2 cut(s) 845, 1013
AspS9I GGNCC 1 cut(s) 1340
AsuC2I CCSGG 1 cut(s) 1337
AsuHPI GGTGA 1 cut(s) 411
AsuNHI GCTAGC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 1340
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BauI CACGAG 1 cut(s) 1590
BbsI GAAGAC 2 cut(s) 961, 987
BbvCI CCTCAGC 1 cut(s) 1039
BbvI GCAGC 6 cut(s) 22, 142, 188, 736, 1000, 1523
BccI CCATC 3 cut(s) 538, 670, 937
BciT130I CCWGG 3 cut(s) 32, 164, 1443
BciVI GTATCC 1 cut(s) 1180
BclI TGATCA 3 cut(s) 501, 1348, 1360
BcnI CCSGG 1 cut(s) 1337
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 3 cut(s) 159, 1122, 1206
BfmI CTRYAG 3 cut(s) 401, 1214, 1609
BfoI RGCGCY 1 cut(s) 846
BfuAI ACCTGC 2 cut(s) 782, 886
BfuI GTATCC 1 cut(s) 1180
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 7 cut(s) 36, 156, 177, 725, 1014, 1070, 1512
BlsI GCNGC 7 cut(s) 37, 157, 178, 726, 1015, 1071, 1513
BmcAI AGTACT 1 cut(s) 1056
Bme1390I CCNGG 4 cut(s) 32, 164, 1337, 1443
Bme18I GGWCC 1 cut(s) 1340
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 1340
BmiI GGNNCC 2 cut(s) 243, 1341
BmrFI CCNGG 4 cut(s) 32, 164, 1337, 1443
BmsI GCATC 2 cut(s) 1052, 1555
BmtI GCTAGC 1 cut(s) 162
BpiI GAAGAC 2 cut(s) 961, 987
BpmI CTGGAG 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 1039
BpuMI CCSGG 1 cut(s) 1337
BsaJI CCNNGG 3 cut(s) 770, 1274, 1336
BsaXI ACNNNNNCTCC 2 cut(s) 860, 890
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 4 cut(s) 243, 742, 955, 1631
BseBI CCWGG 3 cut(s) 32, 164, 1443
BseDI CCNNGG 3 cut(s) 770, 1274, 1336
BseGI GGATG 4 cut(s) 172, 519, 780, 1043
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMII CTCAG 3 cut(s) 288, 525, 1053
BseNI ACTGG 4 cut(s) 243, 742, 955, 1631
BseRI GAGGAG 3 cut(s) 868, 1027, 1533
BseXI GCAGC 6 cut(s) 22, 142, 188, 736, 1000, 1523
BseYI CCCAGC 1 cut(s) 75
BsgI GTGCAG 4 cut(s) 194, 195, 810, 914
Bsh1236I CGCG 2 cut(s) 1011, 1051
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 1336
BslFI GGGAC 1 cut(s) 1353
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 1353
BsmI GAATGC 3 cut(s) 743, 981, 1474
BsnI GGCC 1 cut(s) 26
Bsp1407I TGTACA 2 cut(s) 1004, 1642
Bsp19I CCATGG 1 cut(s) 770
BspACI CCGC 3 cut(s) 1069, 1125, 1259
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 289, 526, 1052
BspFNI CGCG 2 cut(s) 1011, 1051
BspLI GGNNCC 2 cut(s) 243, 1341
BspMAI CTGCAG 2 cut(s) 405, 1218
BspMI ACCTGC 2 cut(s) 782, 886
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 4 cut(s) 806, 1013, 1231, 1662
BsrGI TGTACA 2 cut(s) 1004, 1642
BsrI ACTGG 4 cut(s) 243, 742, 955, 1631
BssECI CCNNGG 3 cut(s) 770, 1274, 1336
BssSI CACGAG 1 cut(s) 1590
BssT1I CCWWGG 2 cut(s) 770, 1274
Bst2BI CACGAG 1 cut(s) 1590
Bst2UI CCWGG 3 cut(s) 32, 164, 1443
BstAUI TGTACA 2 cut(s) 1004, 1642
BstC8I GCNNGC 4 cut(s) 160, 584, 722, 729
BstDEI CTNAG 3 cut(s) 297, 534, 1039
BstDSI CCRYGG 1 cut(s) 770
BstF5I GGATG 4 cut(s) 172, 519, 780, 1043
BstFNI CGCG 2 cut(s) 1011, 1051
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 2 cut(s) 845, 1013
BstMAI GTCTC 1 cut(s) 564
BstMWI GCNNNNNNNGC 4 cut(s) 32, 142, 851, 1112
BstNI CCWGG 3 cut(s) 32, 164, 1443
BstSCI CCNGG 4 cut(s) 30, 162, 1335, 1441
BstSFI CTRYAG 3 cut(s) 401, 1214, 1609
BstUI CGCG 2 cut(s) 1011, 1051
BstV1I GCAGC 6 cut(s) 22, 142, 188, 736, 1000, 1523
BstV2I GAAGAC 2 cut(s) 961, 987
BstX2I RGATCY 1 cut(s) 1223
BstYI RGATCY 1 cut(s) 1223
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 770
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 4 cut(s) 172, 519, 780, 1043
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 5 cut(s) 93, 793, 934, 948, 1638
BveI ACCTGC 2 cut(s) 782, 886
Cac8I GCNNGC 4 cut(s) 160, 584, 722, 729
CfoI GCGC 2 cut(s) 845, 1013
Cfr13I GGNCC 1 cut(s) 1340
Csp6I GTAC 4 cut(s) 123, 1005, 1055, 1643
CviAII CATG 6 cut(s) 40, 152, 771, 971, 1108, 1661
CviQI GTAC 4 cut(s) 123, 1005, 1055, 1643
DdeI CTNAG 3 cut(s) 297, 534, 1039
DraI TTTAAA 1 cut(s) 1482
Eco130I CCWWGG 2 cut(s) 770, 1274
Eco147I AGGCCT 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 1340
Eco57I CTGAAG 1 cut(s) 596
EcoRI GAATTC 2 cut(s) 186, 1264
EcoRII CCWGG 3 cut(s) 30, 162, 1441
EcoT14I CCWWGG 2 cut(s) 770, 1274
ErhI CCWWGG 2 cut(s) 770, 1274
FaeI CATG 6 cut(s) 43, 155, 774, 974, 1111, 1664
FaqI GGGAC 1 cut(s) 1353
FatI CATG 6 cut(s) 39, 151, 770, 970, 1107, 1660
FbaI TGATCA 3 cut(s) 501, 1348, 1360
FblI GTMKAC 2 cut(s) 68, 1210
Fnu4HI GCNGC 7 cut(s) 36, 156, 177, 725, 1014, 1070, 1512
FokI GGATG 4 cut(s) 179, 506, 787, 1030
Fsp4HI GCNGC 7 cut(s) 36, 156, 177, 725, 1014, 1070, 1512
FspBI CTAG 3 cut(s) 159, 1122, 1206
GlaI GCGC 2 cut(s) 844, 1012
GluI GCNGC 7 cut(s) 36, 156, 177, 725, 1014, 1070, 1512
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 1336
HhaI GCGC 2 cut(s) 845, 1013
Hin1II CATG 6 cut(s) 43, 155, 774, 974, 1111, 1664
Hin6I GCGC 2 cut(s) 843, 1011
HinP1I GCGC 2 cut(s) 843, 1011
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 2 cut(s) 470, 718
HinfI GANTC 8 cut(s) 86, 205, 373, 397, 902, 965, 1460, 1598
HpaII CCGG 1 cut(s) 1336
HphI GGTGA 1 cut(s) 411
Hpy166II GTNNAC 7 cut(s) 69, 608, 807, 1007, 1211, 1333, 1645
Hpy188III TCNNGA 6 cut(s) 183, 326, 377, 566, 630, 734
Hpy8I GTNNAC 7 cut(s) 69, 608, 807, 1007, 1211, 1333, 1645
HpyAV CCTTC 4 cut(s) 37, 50, 1410, 1512
HpyCH4IV ACGT 3 cut(s) 658, 1253, 1577
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 142, 851, 1112
HpyF3I CTNAG 3 cut(s) 297, 534, 1039
HpySE526I ACGT 3 cut(s) 658, 1253, 1577
Hsp92II CATG 6 cut(s) 43, 155, 774, 974, 1111, 1664
HspAI GCGC 2 cut(s) 843, 1011
Ksp22I TGATCA 3 cut(s) 501, 1348, 1360
LmnI GCTCC 5 cut(s) 241, 670, 736, 1040, 1417
Lsp1109I GCAGC 6 cut(s) 22, 142, 188, 736, 1000, 1523
LweI GCATC 2 cut(s) 1052, 1555
MaeI CTAG 3 cut(s) 159, 1122, 1206
MaeII ACGT 3 cut(s) 658, 1253, 1577
MaeIII GTNAC 3 cut(s) 705, 1180, 1254
MboII GAAGA 4 cut(s) 490, 966, 987, 990
MfeI CAATTG 1 cut(s) 1079
MflI RGATCY 1 cut(s) 1223
MlyI GAGTC 1 cut(s) 1469
MseI TTAA 4 cut(s) 983, 1059, 1382, 1481
MslI CAYNNNNRTG 1 cut(s) 1590
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 1 cut(s) 1336
MspR9I CCNGG 4 cut(s) 32, 164, 1337, 1443
MunI CAATTG 1 cut(s) 1079
Mva1269I GAATGC 3 cut(s) 743, 981, 1474
MvaI CCWGG 3 cut(s) 32, 164, 1443
MvnI CGCG 2 cut(s) 1011, 1051
MwoI GCNNNNNNNGC 4 cut(s) 32, 142, 851, 1112
NciI CCSGG 1 cut(s) 1337
NcoI CCATGG 1 cut(s) 770
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 6 cut(s) 43, 155, 774, 974, 1111, 1664
NlaIV GGNNCC 2 cut(s) 243, 1341
PceI AGGCCT 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 3 cut(s) 743, 981, 1474
PfeI GAWTC 7 cut(s) 86, 205, 373, 397, 902, 965, 1598
PkrI GCNGC 7 cut(s) 37, 157, 178, 726, 1015, 1071, 1513
PleI GAGTC 1 cut(s) 1468
PpsI GAGTC 1 cut(s) 1468
Psp1406I AACGTT 1 cut(s) 1253
Psp6I CCWGG 3 cut(s) 30, 162, 1441
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 3 cut(s) 30, 162, 1441
PspN4I GGNNCC 2 cut(s) 243, 1341
PspPI GGNCC 1 cut(s) 1340
PstI CTGCAG 2 cut(s) 405, 1218
PsuI RGATCY 1 cut(s) 1223
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 4 cut(s) 124, 1006, 1056, 1644
RsaNI GTAC 4 cut(s) 123, 1005, 1055, 1643
RseI CAYNNNNRTG 1 cut(s) 1590
SaqAI TTAA 4 cut(s) 983, 1059, 1382, 1481
SatI GCNGC 7 cut(s) 36, 156, 177, 725, 1014, 1070, 1512
Sau96I GGNCC 1 cut(s) 1340
ScaI AGTACT 1 cut(s) 1056
SchI GAGTC 1 cut(s) 1469
ScrFI CCNGG 4 cut(s) 32, 164, 1337, 1443
SfaNI GCATC 2 cut(s) 1052, 1555
SfcI CTRYAG 3 cut(s) 401, 1214, 1609
SinI GGWCC 1 cut(s) 1340
SmiMI CAYNNNNRTG 1 cut(s) 1590
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 3 cut(s) 1069, 1125, 1259
SspMI CTAG 3 cut(s) 159, 1122, 1206
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 4 cut(s) 30, 162, 1335, 1441
StyI CCWWGG 2 cut(s) 770, 1274
TaiI ACGT 3 cut(s) 661, 1256, 1580
TaqI TCGA 5 cut(s) 21, 184, 190, 395, 1563
TatI WGTACW 3 cut(s) 1004, 1054, 1642
TauI GCSGC 1 cut(s) 1072
TfiI GAWTC 7 cut(s) 86, 205, 373, 397, 902, 965, 1598
Tru1I TTAA 4 cut(s) 983, 1059, 1382, 1481
Tru9I TTAA 4 cut(s) 983, 1059, 1382, 1481
TscAI CASTG 5 cut(s) 100, 793, 934, 955, 1638
TseI GCWGC 6 cut(s) 35, 155, 176, 724, 1013, 1511
TspDTI ATGAA 8 cut(s) 56, 140, 219, 728, 810, 1169, 1494, 1574
TspGWI ACGGA 2 cut(s) 635, 904
TspRI CASTG 5 cut(s) 100, 793, 934, 955, 1638
VpaK11BI GGWCC 1 cut(s) 1340
XapI RAATTY 5 cut(s) 186, 455, 1264, 1300, 1384
XmiI GTMKAC 2 cut(s) 68, 1210
XspI CTAG 3 cut(s) 159, 1122, 1206
ZrmI AGTACT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.