Rh7DG299500

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001817
Physical Location & Seq
Forward (+)
34276512 .. 34284847
8336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG299500.1

Sequence Viewer

Length: 1845 bp
ATGCAGTCATATGAAATGGAGTTAAAGCCACAACGTTCTGTCTCTGAGACTATGCCACAACAGAATGATGCATCGCAGGAACTTAATCATTTTACTTTGCCCCAGAAGCAACCCCACAGTGATCTTCAGCAAGGGAAAGGAGATCAAAAACCTCTCCAGACTGGAATGTTGATGTCTGGAAAAAATCCAGTGTCAACACAGGAGCAGGACTTAACTCCTAAACCAGAAAATGAATCTCAGTATGTAAAGCTTCAGAAGATGAGTAGTCAACAGGCAATGACCACGGAGCAGCCAAGCACCCCGATGAATCGCAGTAAACAAGTACCATTTGGTCTGTTACTACCTGTCTTATTGCCTCAACTTGATAAAGACAGAGCCATGCAACTTACAACTCTTTTTGGTAAACTGAAGAACAATGAAATCTCCAAAGATGCTTTTGTCCGACACATTAGAAGTGTTGTTGGGGACCAGATGCTCAAGATGGCAGTACATAAAGTACAGACACAGCCTGCTCTTAAACAACAGTTGATGCCTCAGGCTTCGTTGCAGCAACAACCTCCTAGGATGCCATCTATTAGTGCTGGTGCTACCCAGTTCACTGATCCTCGTTTTGCAATTCATCAGAGAGGTGCGAACCCTTCCACAGACCCATCGCACATTCCCACAGTGCACGTGCAGACTGATTCAAGCCATTCGGCCATTGAAAACAATGCCAAAAAATTGCGGGAAGCAGAACGTCAGTCAGATTCTCATGCAATGCAAGTAAATCAGATGTCTTCTTCCAGCACAGGAGCTGCCAATCAAGAAAGGGAGCGGTCCTCGGTTGCTATGCAAGTACATAACAAGCAGCAGCAACAGCAACTGCACTACCCCCAATCATCCTTTGCCATGTATGGATCTACTGGTGGTAATTATCGTCCATATTCAGGGACAAATGTCAATACAATGCCTCTCAAACAGCAATCACATGACTCTCATTTGAGGCAAATTCCTCAACATCAAAGCATGGGCTCAGCTCAGCCAGGTGGGGTGGAAGCCCAGGGAACAAACATCATGAGTGTGCCCAAATTGGAGGGGCAAAATTCTATGAATGACCCTAGCAGACAGCAGGGTGGATCTCTCCCTCACTTCACAAATAATTCGACTTTACAACAAAATCCAGTTCCTTGGCAGTCTTCAAATAAAGAGCAGATTTCTGGCCATTTATCATCAATGCCTTATGTAAAACAGGAACCCAGTGACCAGAGTGCTGAGCAGCAGCACAAGACCCCACTATCTAATTCTCAGCGTTTGCCTTATACTTCTTCTGTGCAACATGAACAAGGAAATGCATCACCTGTAATTTCAATGGACGAGTCTTTAGAGAAGCAGTCTTCAAGAATGGGATTTTCAAACACAGGGCCCTCTGGGAGCATGGTGCCTTCGTCATCTACAAACACAGGGCCCTTGAATCCTGTTTCTTCTTCCACAACGACGCAAGCTGATCCTAACTTAAGCTCTCGGATACCTACTGGCACTTCTCCTACTGGGATTAATAATAGAGTAGCTGCAAAAAAGACTTCTGTTGGCCAAAAGAAGCCTAGTGAAGCACTTGGTTCTTCACCACCGCCTTCAAGTAAGAAGCAAAAAGTATCTGGGGCTTTTTTGGATCAAAGCATTGAACAACTCAATGATGTCACAGCTGTTAGTGGAGTTAATCTAAGGGAAGAGGAGGAGCAGCTGTTTTCTGGGCCCAAGGATGACGGTCGAGCTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAAGAAGAAAGGCTGATTTTGCAGAAGGCTCCCTTGCAGAAAAAATTGGCAGAAATCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

614

Amino Acids

67.31

Weight (kDa)

9.0

Isoelectric Point (pI)

73.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 103 - 167 2.6e-20 RCD1-SRO-TAF4 (RST) plant domain
TAF4 PF05236 556 - 613 2.2e-16 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1417
AccBSI CCGCTC 1 cut(s) 814
AciI CCGC 3 cut(s) 724, 814, 1607
AclI AACGTT 1 cut(s) 34
AclWI GGATC 5 cut(s) 596, 904, 1123, 1478, 1656
AcoI YGGCCR 3 cut(s) 696, 1198, 1567
AcsI RAATTY 2 cut(s) 987, 1081
AcuI CTGAAG 4 cut(s) 110, 236, 428, 1737
AcvI CACGTG 1 cut(s) 673
AfaI GTAC 4 cut(s) 324, 489, 498, 837
AfiI CCNNNNNNNGG 1 cut(s) 926
AflII CTTAAG 1 cut(s) 1492
AgsI TTSAA 9 cut(s) 687, 704, 1179, 1347, 1377, 1392, 1450, 1614, 1661
AjnI CCWGG 2 cut(s) 1021, 1038
AluBI AGCT 9 cut(s) 250, 794, 1016, 1481, 1497, 1547, 1682, 1720, 1751
AluI AGCT 9 cut(s) 250, 794, 1016, 1481, 1497, 1547, 1682, 1720, 1751
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 2 cut(s) 41, 46
Alw44I GTGCAC 1 cut(s) 668
AlwI GGATC 5 cut(s) 596, 904, 1123, 1478, 1656
AlwNI CAGNNNCTG 2 cut(s) 794, 862
AoxI GGCC 6 cut(s) 696, 1198, 1400, 1442, 1567, 1730
ApaI GGGCCC 3 cut(s) 1404, 1446, 1734
ApaLI GTGCAC 1 cut(s) 668
ApeKI GCWGC 9 cut(s) 289, 547, 794, 847, 850, 1255, 1258, 1547, 1717
ApoI RAATTY 2 cut(s) 987, 1081
AseI ATTAAT 1 cut(s) 1533
AspA2I CCTAGG 1 cut(s) 560
AspS9I GGNCC 8 cut(s) 466, 816, 1400, 1401, 1442, 1443, 1730, 1731
AsuHPI GGTGA 2 cut(s) 1326, 1593
AvaII GGWCC 2 cut(s) 466, 816
AvrII CCTAGG 1 cut(s) 560
AxyI CCTNAGG 1 cut(s) 534
BaeGI GKGCMC 5 cut(s) 672, 1065, 1404, 1446, 1734
BalI TGGCCA 2 cut(s) 1200, 1569
BanI GGYRCC 1 cut(s) 1417
BanII GRGCYC 4 cut(s) 1013, 1404, 1446, 1734
BbrPI CACGTG 1 cut(s) 673
BbsI GAAGAC 3 cut(s) 768, 1167, 1365
Bbv12I GWGCWC 1 cut(s) 672
BbvI GCAGC 9 cut(s) 301, 559, 781, 859, 862, 1267, 1270, 1534, 1729
BccI CCATC 3 cut(s) 475, 577, 658
BciT130I CCWGG 2 cut(s) 1023, 1040
BciVI GTATCC 1 cut(s) 1497
BcoDI GTCTC 2 cut(s) 41, 46
BfaI CTAG 3 cut(s) 561, 1098, 1581
BfrI CTTAAG 1 cut(s) 1492
BfuI GTATCC 1 cut(s) 1497
BisI GCNGC 9 cut(s) 290, 548, 795, 848, 851, 1256, 1259, 1548, 1718
BlnI CCTAGG 1 cut(s) 560
BlpI GCTNAGC 3 cut(s) 1012, 1017, 1251
BlsI GCNGC 9 cut(s) 291, 549, 796, 849, 852, 1257, 1260, 1549, 1719
Bme1390I CCNGG 2 cut(s) 1023, 1040
Bme18I GGWCC 2 cut(s) 466, 816
BmgT120I GGNCC 8 cut(s) 466, 816, 1400, 1401, 1442, 1443, 1730, 1731
BmiI GGNNCC 7 cut(s) 467, 1233, 1402, 1419, 1444, 1732, 1812
BmrFI CCNGG 2 cut(s) 1023, 1040
BmrI ACTGGG 3 cut(s) 586, 1230, 1536
BmsI GCATC 8 cut(s) 58, 80, 421, 462, 519, 555, 1340, 1769
BmuI ACTGGG 3 cut(s) 586, 1230, 1536
BoxI GACNNNNGTC 1 cut(s) 935
BpiI GAAGAC 3 cut(s) 768, 1167, 1365
BplI GAGNNNNNCTC 2 cut(s) 803, 835
BpmI CTGGAG 1 cut(s) 140
Bpu1102I GCTNAGC 3 cut(s) 1012, 1017, 1251
BpuEI CTTGAG 1 cut(s) 461
BsaAI YACGTR 1 cut(s) 673
BsaJI CCNNGG 7 cut(s) 282, 560, 819, 1038, 1039, 1166, 1734
BsaXI ACNNNNNCTCC 2 cut(s) 1706, 1736
Bsc4I CCNNNNNNNGG 1 cut(s) 926
Bse1I ACTGG 8 cut(s) 166, 188, 592, 907, 1160, 1236, 1516, 1531
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 2 cut(s) 282, 762
BseBI CCWGG 2 cut(s) 1023, 1040
BseDI CCNNGG 7 cut(s) 282, 560, 819, 1038, 1039, 1166, 1734
BseGI GGATG 3 cut(s) 570, 878, 1744
BseLI CCNNNNNNNGG 1 cut(s) 926
BseMI GCAATG 2 cut(s) 282, 762
BseMII CTCAG 7 cut(s) 36, 251, 548, 1026, 1031, 1242, 1298
BseNI ACTGG 8 cut(s) 166, 188, 592, 907, 1160, 1236, 1516, 1531
BseRI GAGGAG 2 cut(s) 1724, 1727
BseSI GKGCMC 5 cut(s) 672, 1065, 1404, 1446, 1734
BseXI GCAGC 9 cut(s) 301, 559, 781, 859, 862, 1267, 1270, 1534, 1729
BsgI GTGCAG 2 cut(s) 695, 848
Bsh1285I CGRYCG 1 cut(s) 1747
BshFI GGCC 6 cut(s) 698, 1200, 1402, 1444, 1569, 1732
BshNI GGYRCC 1 cut(s) 1417
BsiEI CGRYCG 1 cut(s) 1747
BsiHKAI GWGCWC 1 cut(s) 672
BslFI GGGAC 2 cut(s) 479, 943
BslI CCNNNNNNNGG 1 cut(s) 926
BsmAI GTCTC 2 cut(s) 41, 46
BsmFI GGGAC 2 cut(s) 479, 943
BsnI GGCC 6 cut(s) 698, 1200, 1402, 1444, 1569, 1732
Bsp120I GGGCCC 3 cut(s) 1400, 1442, 1730
Bsp1286I GDGCHC 6 cut(s) 672, 1013, 1065, 1404, 1446, 1734
Bsp143I GATC 7 cut(s) 121, 142, 601, 896, 1115, 1483, 1648
Bsp1720I GCTNAGC 3 cut(s) 1012, 1017, 1251
BspACI CCGC 3 cut(s) 724, 814, 1607
BspANI GGCC 6 cut(s) 698, 1200, 1402, 1444, 1569, 1732
BspCNI CTCAG 7 cut(s) 37, 250, 547, 1025, 1030, 1243, 1297
BspHI TCATGA 1 cut(s) 1053
BspLI GGNNCC 7 cut(s) 467, 1233, 1402, 1419, 1444, 1732, 1812
BspPI GGATC 5 cut(s) 596, 904, 1123, 1478, 1656
BspT107I GGYRCC 1 cut(s) 1417
BspTI CTTAAG 1 cut(s) 1492
BsrBI CCGCTC 1 cut(s) 814
BsrDI GCAATG 2 cut(s) 282, 762
BsrI ACTGG 8 cut(s) 166, 188, 592, 907, 1160, 1236, 1516, 1531
BssECI CCNNGG 7 cut(s) 282, 560, 819, 1038, 1039, 1166, 1734
BssMI GATC 7 cut(s) 121, 142, 601, 896, 1115, 1483, 1648
BssT1I CCWWGG 3 cut(s) 560, 1166, 1734
Bst2UI CCWGG 2 cut(s) 1023, 1040
Bst4CI ACNGT 4 cut(s) 119, 525, 667, 1745
Bst6I CTCTTC 2 cut(s) 1701, 1762
BstAFI CTTAAG 1 cut(s) 1492
BstBAI YACGTR 1 cut(s) 673
BstC8I GCNNGC 2 cut(s) 510, 1479
BstDEI CTNAG 8 cut(s) 45, 237, 534, 1012, 1017, 1251, 1284, 1700
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 3 cut(s) 570, 878, 1744
BstKTI GATC 7 cut(s) 124, 145, 604, 899, 1118, 1486, 1651
BstMAI GTCTC 2 cut(s) 41, 46
BstMBI GATC 7 cut(s) 121, 142, 601, 896, 1115, 1483, 1648
BstMCI CGRYCG 1 cut(s) 1747
BstMWI GCNNNNNNNGC 4 cut(s) 106, 856, 1757, 1801
BstNI CCWGG 2 cut(s) 1023, 1040
BstPAI GACNNNNGTC 1 cut(s) 935
BstSCI CCNGG 2 cut(s) 1021, 1038
BstSLI GKGCMC 5 cut(s) 672, 1065, 1404, 1446, 1734
BstV1I GCAGC 9 cut(s) 301, 559, 781, 859, 862, 1267, 1270, 1534, 1729
BstV2I GAAGAC 3 cut(s) 768, 1167, 1365
BstX2I RGATCY 2 cut(s) 896, 1115
BstXI CCANNNNNNTGG 1 cut(s) 1167
BstYI RGATCY 2 cut(s) 896, 1115
Bsu36I CCTNAGG 1 cut(s) 534
BsuI GTATCC 1 cut(s) 1497
BsuRI GGCC 6 cut(s) 698, 1200, 1402, 1444, 1569, 1732
BtgI CCRYGG 1 cut(s) 282
BtgZI GCGATG 2 cut(s) 57, 636
BtsCI GGATG 3 cut(s) 570, 878, 1744
BtsIMutI CAGTG 5 cut(s) 124, 195, 597, 672, 1243
Cac8I GCNNGC 2 cut(s) 510, 1479
CaiI CAGNNNCTG 2 cut(s) 794, 862
CciI TCATGA 1 cut(s) 1053
Cfr13I GGNCC 8 cut(s) 466, 816, 1400, 1401, 1442, 1443, 1730, 1731
CseI GACGC 1 cut(s) 1483
Csp6I GTAC 4 cut(s) 323, 488, 497, 836
CviAII CATG 8 cut(s) 379, 752, 889, 968, 1006, 1054, 1316, 1414
CviQI GTAC 4 cut(s) 323, 488, 497, 836
DdeI CTNAG 8 cut(s) 45, 237, 534, 1012, 1017, 1251, 1284, 1700
DpnI GATC 7 cut(s) 123, 144, 603, 898, 1117, 1485, 1650
DpnII GATC 7 cut(s) 121, 142, 601, 896, 1115, 1483, 1648
EaeI YGGCCR 3 cut(s) 696, 1198, 1567
Eam1104I CTCTTC 2 cut(s) 1701, 1762
EarI CTCTTC 2 cut(s) 1701, 1762
Eco130I CCWWGG 3 cut(s) 560, 1166, 1734
Eco24I GRGCYC 4 cut(s) 1013, 1404, 1446, 1734
Eco47I GGWCC 2 cut(s) 466, 816
Eco57I CTGAAG 4 cut(s) 110, 236, 428, 1737
Eco72I CACGTG 1 cut(s) 673
Eco81I CCTNAGG 1 cut(s) 534
EcoO109I RGGNCCY 4 cut(s) 1400, 1401, 1442, 1443
EcoRII CCWGG 2 cut(s) 1021, 1038
EcoT14I CCWWGG 3 cut(s) 560, 1166, 1734
EcoT22I ATGCAT 2 cut(s) 73, 1333
EcoT38I GRGCYC 4 cut(s) 1013, 1404, 1446, 1734
ErhI CCWWGG 3 cut(s) 560, 1166, 1734
FaeI CATG 8 cut(s) 382, 755, 892, 971, 1009, 1057, 1319, 1417
FalI AAGNNNNNCTT 2 cut(s) 1799, 1831
FaqI GGGAC 2 cut(s) 479, 943
FatI CATG 8 cut(s) 378, 751, 888, 967, 1005, 1053, 1315, 1413
FauI CCCGC 1 cut(s) 717
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 9 cut(s) 290, 548, 795, 848, 851, 1256, 1259, 1548, 1718
FokI GGATG 3 cut(s) 577, 865, 1751
FriOI GRGCYC 4 cut(s) 1013, 1404, 1446, 1734
Fsp4HI GCNGC 9 cut(s) 290, 548, 795, 848, 851, 1256, 1259, 1548, 1718
FspBI CTAG 3 cut(s) 561, 1098, 1581
GluI GCNGC 9 cut(s) 290, 548, 795, 848, 851, 1256, 1259, 1548, 1718
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 6 cut(s) 698, 1200, 1402, 1444, 1569, 1732
HgaI GACGC 1 cut(s) 1483
Hin1II CATG 8 cut(s) 382, 755, 892, 971, 1009, 1057, 1319, 1417
HincII GTYRAC 2 cut(s) 195, 269
HindII GTYRAC 2 cut(s) 195, 269
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 7 cut(s) 233, 307, 683, 746, 971, 1355, 1450
HphI GGTGA 2 cut(s) 1326, 1593
Hpy166II GTNNAC 6 cut(s) 195, 269, 317, 404, 597, 670
Hpy188I TCNGA 8 cut(s) 46, 255, 443, 624, 745, 771, 1503, 1756
Hpy188III TCNNGA 7 cut(s) 157, 177, 478, 803, 1054, 1377, 1764
Hpy8I GTNNAC 6 cut(s) 195, 269, 317, 404, 597, 670
Hpy99I CGWCG 1 cut(s) 1477
HpyAV CCTTC 4 cut(s) 648, 1431, 1620, 1801
HpyCH4III ACNGT 4 cut(s) 119, 525, 667, 1745
HpyCH4IV ACGT 3 cut(s) 34, 672, 736
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 856, 1757, 1801
HpyF3I CTNAG 8 cut(s) 45, 237, 534, 1012, 1017, 1251, 1284, 1700
HpySE526I ACGT 3 cut(s) 34, 672, 736
Hsp92II CATG 8 cut(s) 382, 755, 892, 971, 1009, 1057, 1319, 1417
Kzo9I GATC 7 cut(s) 121, 142, 601, 896, 1115, 1483, 1648
LmnI GCTCC 7 cut(s) 202, 286, 791, 811, 1410, 1714, 1816
Lsp1109I GCAGC 9 cut(s) 301, 559, 781, 859, 862, 1267, 1270, 1534, 1729
LweI GCATC 8 cut(s) 58, 80, 421, 462, 519, 555, 1340, 1769
MaeI CTAG 3 cut(s) 561, 1098, 1581
MaeII ACGT 3 cut(s) 34, 672, 736
MaeIII GTNAC 3 cut(s) 336, 1238, 1675
MalI GATC 7 cut(s) 123, 144, 603, 898, 1117, 1485, 1650
MbiI CCGCTC 1 cut(s) 814
MboI GATC 7 cut(s) 121, 142, 601, 896, 1115, 1483, 1648
MflI RGATCY 2 cut(s) 896, 1115
MhlI GDGCHC 6 cut(s) 672, 1013, 1065, 1404, 1446, 1734
MlsI TGGCCA 2 cut(s) 1200, 1569
MluNI TGGCCA 2 cut(s) 1200, 1569
MlyI GAGTC 2 cut(s) 965, 1364
MmeI TCCRAC 1 cut(s) 466
Mox20I TGGCCA 2 cut(s) 1200, 1569
Mph1103I ATGCAT 2 cut(s) 73, 1333
MscI TGGCCA 2 cut(s) 1200, 1569
MseI TTAA 8 cut(s) 23, 84, 212, 516, 1493, 1533, 1695, 1843
MslI CAYNNNNRTG 2 cut(s) 302, 1058
Msp20I TGGCCA 2 cut(s) 1200, 1569
MspA1I CMGCKG 2 cut(s) 1682, 1720
MspCI CTTAAG 1 cut(s) 1492
MspR9I CCNGG 2 cut(s) 1023, 1040
MvaI CCWGG 2 cut(s) 1023, 1040
MwoI GCNNNNNNNGC 4 cut(s) 106, 856, 1757, 1801
NdeI CATATG 1 cut(s) 10
NdeII GATC 7 cut(s) 121, 142, 601, 896, 1115, 1483, 1648
NlaIII CATG 8 cut(s) 382, 755, 892, 971, 1009, 1057, 1319, 1417
NlaIV GGNNCC 7 cut(s) 467, 1233, 1402, 1419, 1444, 1732, 1812
NmuCI GTSAC 2 cut(s) 1238, 1675
NsiI ATGCAT 2 cut(s) 73, 1333
PagI TCATGA 1 cut(s) 1053
PasI CCCWGGG 1 cut(s) 1039
PfeI GAWTC 5 cut(s) 233, 307, 683, 746, 1450
PkrI GCNGC 9 cut(s) 291, 549, 796, 849, 852, 1257, 1260, 1549, 1719
PleI GAGTC 2 cut(s) 965, 1363
PmaCI CACGTG 1 cut(s) 673
PmlI CACGTG 1 cut(s) 673
PpsI GAGTC 2 cut(s) 965, 1363
Ppu21I YACGTR 1 cut(s) 673
PshAI GACNNNNGTC 1 cut(s) 935
PshBI ATTAAT 1 cut(s) 1533
Psp1406I AACGTT 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 1021, 1038
PspCI CACGTG 1 cut(s) 673
PspGI CCWGG 2 cut(s) 1021, 1038
PspN4I GGNNCC 7 cut(s) 467, 1233, 1402, 1419, 1444, 1732, 1812
PspOMI GGGCCC 3 cut(s) 1400, 1442, 1730
PspPI GGNCC 8 cut(s) 466, 816, 1400, 1401, 1442, 1443, 1730, 1731
PstNI CAGNNNCTG 2 cut(s) 794, 862
PsuI RGATCY 2 cut(s) 896, 1115
PvuII CAGCTG 2 cut(s) 1682, 1720
RsaI GTAC 4 cut(s) 324, 489, 498, 837
RsaNI GTAC 4 cut(s) 323, 488, 497, 836
RseI CAYNNNNRTG 2 cut(s) 302, 1058
SaqAI TTAA 8 cut(s) 23, 84, 212, 516, 1493, 1533, 1695, 1843
SatI GCNGC 9 cut(s) 290, 548, 795, 848, 851, 1256, 1259, 1548, 1718
Sau3AI GATC 7 cut(s) 121, 142, 601, 896, 1115, 1483, 1648
Sau96I GGNCC 8 cut(s) 466, 816, 1400, 1401, 1442, 1443, 1730, 1731
SchI GAGTC 2 cut(s) 965, 1364
ScrFI CCNGG 2 cut(s) 1023, 1040
SduI GDGCHC 6 cut(s) 672, 1013, 1065, 1404, 1446, 1734
SfaNI GCATC 8 cut(s) 58, 80, 421, 462, 519, 555, 1340, 1769
SinI GGWCC 2 cut(s) 466, 816
SmiMI CAYNNNNRTG 2 cut(s) 302, 1058
SmlI CTYRAG 2 cut(s) 476, 1492
SmoI CTYRAG 2 cut(s) 476, 1492
SsiI CCGC 3 cut(s) 724, 814, 1607
SspMI CTAG 3 cut(s) 561, 1098, 1581
StyD4I CCNGG 2 cut(s) 1021, 1038
StyI CCWWGG 3 cut(s) 560, 1166, 1734
TaaI ACNGT 4 cut(s) 119, 525, 667, 1745
TaiI ACGT 3 cut(s) 37, 675, 739
TaqI TCGA 3 cut(s) 1142, 1747, 1765
TatI WGTACW 3 cut(s) 487, 496, 835
TfiI GAWTC 5 cut(s) 233, 307, 683, 746, 1450
Tru1I TTAA 8 cut(s) 23, 84, 212, 516, 1493, 1533, 1695, 1843
Tru9I TTAA 8 cut(s) 23, 84, 212, 516, 1493, 1533, 1695, 1843
TscAI CASTG 5 cut(s) 124, 195, 604, 672, 1243
TseFI GTSAC 2 cut(s) 1238, 1675
TseI GCWGC 9 cut(s) 289, 547, 794, 847, 850, 1255, 1258, 1547, 1717
Tsp45I GTSAC 2 cut(s) 1238, 1675
TspDTI ATGAA 7 cut(s) 27, 246, 320, 432, 608, 1103, 1332
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 5 cut(s) 124, 195, 604, 672, 1243
Vha464I CTTAAG 1 cut(s) 1492
VneI GTGCAC 1 cut(s) 668
VpaK11BI GGWCC 2 cut(s) 466, 816
VspI ATTAAT 1 cut(s) 1533
XapI RAATTY 2 cut(s) 987, 1081
XmaJI CCTAGG 1 cut(s) 560
XspI CTAG 3 cut(s) 561, 1098, 1581
Zsp2I ATGCAT 2 cut(s) 73, 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.