Rorug07G0159600

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001817
Physical Location & Seq
Reverse (-)
12729204 .. 12733041
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0159600.1

Sequence Viewer

Length: 732 bp
ATGGCGGCGTCTCAGGCGAACATGGAGAAGATGCAGGTCCGCCAGAATTACCGCAATCTCTGGCACTCTGACCTCATGGGAACCATTCAGGCCGATACTCGCTATTGCTGCTTCTCGTTTTTTTGTGCACCGTGTGCATCATACTTGCTCCGGAAAAGAGCTCTTTACAATGACATGTCAAGATATGTATGCTGTGCTGGTTATATGCCCTGCAGTGGTAGATGTGGGGAAAGTAAATGCCCTGAATTTTGCCTGGCCACTGAGGTGTTTTTGTGCTTTGGGAATTCCGTGGCTTCAACTCGCTTTCTGTTGCAAGATGAATTTAATATTCAGACCACGCAGTGTGATAATTGCATCATTGGTTTCATGGTCTGCCTACAACAAGTTGCATGTATTTTCTCCATAGTTGCAATGCTAGTTGGAAGTGAAGAAATCTCAGAGGCGTCTCAGTTATTGAACTGTTTGGCTGACGTGGTGTACTGCAGTGTGTGTGCATGTATGCAGACACAACACAAGATTGAAATGGATAAGCGTGATGGCATGTTTGGACCCCAACCAATGGCAGTACCTCAGTTTCAGCAGATGTCTCGCATTGATCAACAAATTCCTCCCAATGTCGGATATCCTCCTCAACCAGTATACGGGCAACCCTATGGGTATCCACCTCCTCCTCAGGCTCAAGGCTATCCTCCAGCTGGATACCCTCCACCTGGTTATCCACCTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

243

Amino Acids

27.17

Weight (kDa)

5.68

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 559
AccI GTMKAC 1 cut(s) 639
AccIII TCCGGA 1 cut(s) 150
AciI CCGC 3 cut(s) 5, 40, 52
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 4 cut(s) 245, 283, 320, 603
AcyI GRCGYC 2 cut(s) 8, 443
AdeI CACNNNGTG 2 cut(s) 134, 342
AfaI GTAC 2 cut(s) 479, 567
AfiI CCNNNNNNNGG 6 cut(s) 215, 559, 617, 641, 695, 710
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 3 cut(s) 297, 457, 521
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 2 cut(s) 252, 709
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 2 cut(s) 161, 695
AluI AGCT 2 cut(s) 161, 695
Alw21I GWGCWC 2 cut(s) 130, 163
Alw26I GTCTC 3 cut(s) 15, 450, 591
Alw44I GTGCAC 1 cut(s) 126
Aor13HI TCCGGA 1 cut(s) 150
AoxI GGCC 2 cut(s) 90, 255
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 4 cut(s) 245, 283, 320, 603
AspS9I GGNCC 2 cut(s) 37, 548
AvaII GGWCC 2 cut(s) 37, 548
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 130, 163
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 2 cut(s) 254, 711
BciVI GTATCC 2 cut(s) 669, 692
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 3 cut(s) 15, 450, 591
BfaI CTAG 2 cut(s) 416, 726
BfmI CTRYAG 2 cut(s) 211, 481
BfuAI ACCTGC 1 cut(s) 25
BfuI GTATCC 2 cut(s) 669, 692
BisI GCNGC 2 cut(s) 6, 109
BlsI GCNGC 2 cut(s) 7, 110
Bme1390I CCNGG 2 cut(s) 254, 711
Bme18I GGWCC 2 cut(s) 37, 548
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 37, 548
BmiI GGNNCC 2 cut(s) 82, 550
BmrFI CCNGG 2 cut(s) 254, 711
BmsI GCATC 3 cut(s) 21, 146, 363
BpmI CTGGAG 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 663
BsaHI GRCGYC 2 cut(s) 8, 443
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 559, 617, 641, 695, 710
Bse1I ACTGG 1 cut(s) 635
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 1 cut(s) 417
BseAI TCCGGA 1 cut(s) 150
BseBI CCWGG 2 cut(s) 254, 711
BseDI CCNNGG 1 cut(s) 288
BseLI CCNNNNNNNGG 6 cut(s) 215, 559, 617, 641, 695, 710
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 6 cut(s) 26, 252, 450, 461, 584, 686
BseNI ACTGG 1 cut(s) 635
BseRI GAGGAG 3 cut(s) 618, 657, 660
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 95
BshFI GGCC 2 cut(s) 92, 257
BsiHKAI GWGCWC 2 cut(s) 130, 163
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 6 cut(s) 215, 559, 617, 641, 695, 710
BsmAI GTCTC 3 cut(s) 15, 450, 591
BsmBI CGTCTC 2 cut(s) 15, 450
BsnI GGCC 2 cut(s) 92, 257
Bsp1286I GDGCHC 2 cut(s) 130, 163
Bsp13I TCCGGA 1 cut(s) 150
Bsp143I GATC 1 cut(s) 595
BspACI CCGC 3 cut(s) 5, 40, 52
BspANI GGCC 2 cut(s) 92, 257
BspCNI CTCAG 6 cut(s) 25, 253, 449, 460, 583, 685
BspEI TCCGGA 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 82, 550
BspMAI CTGCAG 2 cut(s) 215, 485
BspMI ACCTGC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 595
BssNAI GTATAC 1 cut(s) 640
BssNI GRCGYC 2 cut(s) 8, 443
Bst1107I GTATAC 1 cut(s) 640
Bst2UI CCWGG 2 cut(s) 254, 711
Bst4CI ACNGT 2 cut(s) 132, 461
BstACI GRCGYC 2 cut(s) 8, 443
BstAPI GCANNNNNTGC 1 cut(s) 134
BstDEI CTNAG 6 cut(s) 12, 261, 436, 447, 570, 672
BstDSI CCRYGG 1 cut(s) 288
BstKTI GATC 1 cut(s) 598
BstMAI GTCTC 3 cut(s) 15, 450, 591
BstMBI GATC 1 cut(s) 595
BstMWI GCNNNNNNNGC 3 cut(s) 14, 108, 134
BstNI CCWGG 2 cut(s) 254, 711
BstNSI RCATGY 4 cut(s) 178, 393, 498, 544
BstSCI CCNGG 2 cut(s) 252, 709
BstSFI CTRYAG 2 cut(s) 211, 481
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 95
BstZ17I GTATAC 1 cut(s) 640
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 2 cut(s) 669, 692
BsuRI GGCC 2 cut(s) 92, 257
BtgI CCRYGG 1 cut(s) 288
BtrI CACGTC 1 cut(s) 472
BtsI GCAGTG 3 cut(s) 220, 347, 490
BtsIMutI CAGTG 4 cut(s) 220, 258, 347, 490
BveI ACCTGC 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 37, 548
CseI GACGC 1 cut(s) 432
CsiI ACCWGGT 1 cut(s) 709
Csp6I GTAC 2 cut(s) 478, 566
CviAII CATG 7 cut(s) 22, 76, 175, 367, 390, 495, 541
CviJI RGCY 8 cut(s) 92, 161, 257, 293, 467, 677, 684, 695
CviKI_1 RGCY 8 cut(s) 92, 161, 257, 293, 467, 677, 684, 695
CviQI GTAC 2 cut(s) 478, 566
DdeI CTNAG 6 cut(s) 12, 261, 436, 447, 570, 672
DpnI GATC 1 cut(s) 597
DpnII GATC 1 cut(s) 595
DraIII CACNNNGTG 2 cut(s) 134, 342
EaeI YGGCCR 1 cut(s) 255
EciI GGCGGA 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 623
Eco47I GGWCC 2 cut(s) 37, 548
Eco53kI GAGCTC 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 252, 709
EcoRV GATATC 1 cut(s) 623
EcoT38I GRGCYC 1 cut(s) 163
Esp3I CGTCTC 2 cut(s) 15, 450
FaeI CATG 7 cut(s) 25, 79, 178, 370, 393, 498, 544
FatI CATG 7 cut(s) 21, 75, 174, 366, 389, 494, 540
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 2 cut(s) 6, 109
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 6, 109
FspBI CTAG 2 cut(s) 416, 726
GluI GCNGC 2 cut(s) 6, 109
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 2 cut(s) 92, 257
HapII CCGG 1 cut(s) 151
HgaI GACGC 1 cut(s) 432
Hin1I GRCGYC 2 cut(s) 8, 443
Hin1II CATG 7 cut(s) 25, 79, 178, 370, 393, 498, 544
HpaII CCGG 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 128, 478, 640
Hpy188I TCNGA 4 cut(s) 70, 333, 439, 620
Hpy188III TCNNGA 2 cut(s) 151, 180
Hpy8I GTNNAC 3 cut(s) 128, 478, 640
HpyAV CCTTC 1 cut(s) 732
HpyCH4III ACNGT 2 cut(s) 132, 461
HpyCH4IV ACGT 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 108, 134
HpyF3I CTNAG 6 cut(s) 12, 261, 436, 447, 570, 672
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 2 cut(s) 8, 443
Hsp92II CATG 7 cut(s) 25, 79, 178, 370, 393, 498, 544
Kpn2I TCCGGA 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 1 cut(s) 595
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 3 cut(s) 21, 146, 363
MabI ACCWGGT 1 cut(s) 709
MaeI CTAG 2 cut(s) 416, 726
MaeII ACGT 1 cut(s) 471
MalI GATC 1 cut(s) 597
MboI GATC 1 cut(s) 595
MboII GAAGA 2 cut(s) 40, 440
MhlI GDGCHC 2 cut(s) 130, 163
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 6 cut(s) 46, 245, 283, 320, 349, 603
MluNI TGGCCA 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 400, 598
Mox20I TGGCCA 1 cut(s) 257
MroI TCCGGA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 257
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 695
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 254, 711
MvaI CCWGG 2 cut(s) 254, 711
MwoI GCNNNNNNNGC 3 cut(s) 14, 108, 134
NdeII GATC 1 cut(s) 595
NlaIII CATG 7 cut(s) 25, 79, 178, 370, 393, 498, 544
NlaIV GGNNCC 2 cut(s) 82, 550
NspI RCATGY 4 cut(s) 178, 393, 498, 544
OliI CACNNNNGTG 1 cut(s) 263
PciI ACATGT 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 2 cut(s) 7, 110
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 252, 709
PspGI CCWGG 2 cut(s) 252, 709
PspN4I GGNNCC 2 cut(s) 82, 550
PspPI GGNCC 2 cut(s) 37, 548
PstI CTGCAG 2 cut(s) 215, 485
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 2 cut(s) 479, 567
RsaNI GTAC 2 cut(s) 478, 566
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 6, 109
Sau3AI GATC 1 cut(s) 595
Sau96I GGNCC 2 cut(s) 37, 548
ScrFI CCNGG 2 cut(s) 254, 711
SduI GDGCHC 2 cut(s) 130, 163
SexAI ACCWGGT 1 cut(s) 709
SfaNI GCATC 3 cut(s) 21, 146, 363
SfcI CTRYAG 2 cut(s) 211, 481
SinI GGWCC 2 cut(s) 37, 548
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
Sse9I AATT 6 cut(s) 46, 245, 283, 320, 349, 603
SsiI CCGC 3 cut(s) 5, 40, 52
SspI AATATT 1 cut(s) 328
SspMI CTAG 2 cut(s) 416, 726
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 252, 709
TaaI ACNGT 2 cut(s) 132, 461
TaiI ACGT 1 cut(s) 474
TasI AATT 6 cut(s) 46, 245, 283, 320, 349, 603
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 4 cut(s) 220, 265, 347, 490
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 333, 355
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 4 cut(s) 220, 265, 347, 490
Van91I CCANNNNNTGG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 126
VpaK11BI GGWCC 2 cut(s) 37, 548
XapI RAATTY 4 cut(s) 245, 283, 320, 603
XceI RCATGY 4 cut(s) 178, 393, 498, 544
XmiI GTMKAC 1 cut(s) 639
XspI CTAG 2 cut(s) 416, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.