RLG00000002619

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001817
Physical Location & Seq
Forward (+)
37065488 .. 37069061
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002619

Sequence Viewer

Length: 822 bp
ATGCGATTTTCAAGCTCAGGGCCCTCTGGGAGCATGGTGCCTTCGTCATCTACAAGCACAAGGCCCTTGAATCCTGTTTCTTCTTCCACAATAATGCAAGCTGATCCTAACTTAAGCTCTCAGATACCTTCTGGAACTTCTCCTGCTGGGATTAATAATAGACTACCTGTTAAAAAGACTTCTGTTGGCCAAAAGAAGCCTAGTGAAGCACTTGGTTCTTCACCACCACGTTCAAGTAAGAAGCAAAAAGTATCTGGAGCTTTTTTGGATCAAAGCACTGAACAACGCAATGATGTCACAGCTGTTAGTGGAGTTAATCTAAGGGGAGAGGAGGAGCAGCTGTTTTCTGGGCCCAAGGACAACGGTCGAGCTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAAGAAGAAAGGCTGATTTTGCAGAAGACTCCCTTGCAGAAAAAATTTGCAGAAATCATGTTCAGATGTGGTTTGAAAAGTATAAGCAATGATGTGGAACGATGCTTGTCACTGTGCGTGGAGGAAAGAATGAGGGGACTGATAAATAATTTGATAAAACTGTCAAAGCAGGGGGTTGATGCTGAGAAACCAAAACACCAAACCATCATTACCTCTGATGTTCAGCAACAAATTATAAATCAGAACAAGAAAGCTAAGGAAGAATGGGAAAAGAAGCAAGCTGAGGCAGAAAAGGTCCGGAAGCTTAATGAAGCAAACAAAGAAGAAGATGACAACATGAGGACAACAGCAGCAAATGTTGCCTCCCGTGCTGCTGTTGGAGGAGATGACTTGTTGGTCAAAATGGCAACTTATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

274

Amino Acids

29.81

Weight (kDa)

9.36

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 97 - 261 2.3e-47 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 638
AasI GACNNNNNNGTC 1 cut(s) 797
AccB1I GGYRCC 1 cut(s) 37
AccIII TCCGGA 1 cut(s) 699
AclWI GGATC 2 cut(s) 98, 276
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 357
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 4 cut(s) 12, 70, 234, 478
AlwI GGATC 2 cut(s) 98, 276
Aor13HI TCCGGA 1 cut(s) 699
AoxI GGCC 4 cut(s) 20, 62, 187, 350
ApaI GGGCCC 2 cut(s) 24, 354
ApeKI GCWGC 3 cut(s) 337, 752, 773
ApoI RAATTY 1 cut(s) 446
AseI ATTAAT 1 cut(s) 153
AspS9I GGNCC 6 cut(s) 20, 21, 63, 350, 351, 697
AsuHPI GGTGA 1 cut(s) 213
AvaII GGWCC 1 cut(s) 697
BaeGI GKGCMC 2 cut(s) 24, 354
BalI TGGCCA 1 cut(s) 189
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 24, 354
BbsI GAAGAC 1 cut(s) 434
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 349, 760, 764
BccI CCATC 1 cut(s) 614
BfaI CTAG 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 112
BisI GCNGC 3 cut(s) 338, 753, 774
BlsI GCNGC 3 cut(s) 339, 754, 775
Bme18I GGWCC 1 cut(s) 697
BmgT120I GGNCC 6 cut(s) 20, 21, 63, 350, 351, 697
BmiI GGNNCC 3 cut(s) 22, 39, 352
BmsI GCATC 3 cut(s) 389, 494, 571
BoxI GACNNNNGTC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 434
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 3 cut(s) 16, 657, 684
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 699
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bse3DI GCAATG 2 cut(s) 295, 496
BseAI TCCGGA 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 354
BseMI GCAATG 2 cut(s) 295, 496
BseMII CTCAG 4 cut(s) 30, 134, 576, 675
BseRI GAGGAG 3 cut(s) 344, 347, 798
BseSI GKGCMC 2 cut(s) 24, 354
BseXI GCAGC 3 cut(s) 349, 760, 764
BseYI CCCAGC 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 4 cut(s) 22, 64, 189, 352
BshNI GGYRCC 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 367
BsiSI CCGG 1 cut(s) 700
BslFI GGGAC 1 cut(s) 552
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 4 cut(s) 22, 64, 189, 352
Bsp120I GGGCCC 2 cut(s) 20, 350
Bsp1286I GDGCHC 2 cut(s) 24, 354
Bsp13I TCCGGA 1 cut(s) 699
Bsp143I GATC 2 cut(s) 103, 268
BspANI GGCC 4 cut(s) 22, 64, 189, 352
BspCNI CTCAG 4 cut(s) 29, 133, 577, 676
BspEI TCCGGA 1 cut(s) 699
BspLI GGNNCC 3 cut(s) 22, 39, 352
BspPI GGATC 2 cut(s) 98, 276
BspT107I GGYRCC 1 cut(s) 37
BspTI CTTAAG 1 cut(s) 112
BsrDI GCAATG 2 cut(s) 295, 496
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 103, 268
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 365, 516, 564
Bst6I CTCTTC 1 cut(s) 382
BstAFI CTTAAG 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 2 cut(s) 99, 681
BstDEI CTNAG 6 cut(s) 16, 120, 320, 585, 657, 684
BstKTI GATC 2 cut(s) 106, 271
BstMBI GATC 2 cut(s) 103, 268
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 4 cut(s) 377, 421, 761, 770
BstPAI GACNNNNGTC 1 cut(s) 363
BstSLI GKGCMC 2 cut(s) 24, 354
BstV1I GCAGC 3 cut(s) 349, 760, 764
BstV2I GAAGAC 1 cut(s) 434
BsuRI GGCC 4 cut(s) 22, 64, 189, 352
BtsIMutI CAGTG 2 cut(s) 276, 512
Cac8I GCNNGC 2 cut(s) 99, 681
Cfr13I GGNCC 6 cut(s) 20, 21, 63, 350, 351, 697
CviAII CATG 3 cut(s) 34, 460, 739
DdeI CTNAG 6 cut(s) 16, 120, 320, 585, 657, 684
DpnI GATC 2 cut(s) 105, 270
DpnII GATC 2 cut(s) 103, 268
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 24, 354
Eco47I GGWCC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 357
EcoO109I RGGNCCY 3 cut(s) 20, 21, 63
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 2 cut(s) 24, 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 37, 463, 742
FaiI YATR 6 cut(s) 35, 461, 485, 638, 740, 816
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 552
FatI CATG 3 cut(s) 33, 459, 738
Fnu4HI GCNGC 3 cut(s) 338, 753, 774
FriOI GRGCYC 2 cut(s) 24, 354
Fsp4HI GCNGC 3 cut(s) 338, 753, 774
FspBI CTAG 1 cut(s) 201
GluI GCNGC 3 cut(s) 338, 753, 774
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 4 cut(s) 22, 64, 189, 352
HapII CCGG 1 cut(s) 700
Hin1II CATG 3 cut(s) 37, 463, 742
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 2 cut(s) 70, 430
HpaII CCGG 1 cut(s) 700
HphI GGTGA 1 cut(s) 213
Hpy188I TCNGA 5 cut(s) 123, 376, 467, 619, 645
Hpy188III TCNNGA 4 cut(s) 132, 255, 384, 700
HpyAV CCTTC 2 cut(s) 51, 138
HpyCH4III ACNGT 3 cut(s) 365, 516, 564
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 5 cut(s) 97, 397, 424, 439, 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 377, 421, 761, 770
HpyF3I CTNAG 6 cut(s) 16, 120, 320, 585, 657, 684
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 3 cut(s) 37, 463, 742
Kpn2I TCCGGA 1 cut(s) 699
Kzo9I GATC 2 cut(s) 103, 268
LmnI GCTCC 3 cut(s) 30, 257, 334
Lsp1109I GCAGC 3 cut(s) 349, 760, 764
LweI GCATC 3 cut(s) 389, 494, 571
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 295, 510
MalI GATC 2 cut(s) 105, 270
MboI GATC 2 cut(s) 103, 268
MhlI GDGCHC 2 cut(s) 24, 354
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 446, 550, 633
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 760
Mox20I TGGCCA 1 cut(s) 189
MroI TCCGGA 1 cut(s) 699
MscI TGGCCA 1 cut(s) 189
MseI TTAA 5 cut(s) 113, 153, 171, 315, 708
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 2 cut(s) 302, 340
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 1 cut(s) 700
MwoI GCNNNNNNNGC 4 cut(s) 377, 421, 761, 770
NdeII GATC 2 cut(s) 103, 268
NlaIII CATG 3 cut(s) 37, 463, 742
NlaIV GGNNCC 3 cut(s) 22, 39, 352
NmuCI GTSAC 2 cut(s) 295, 510
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 3 cut(s) 339, 754, 775
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PshAI GACNNNNGTC 1 cut(s) 363
PshBI ATTAAT 1 cut(s) 153
PsiI TTATAA 1 cut(s) 638
PspFI CCCAGC 1 cut(s) 146
PspN4I GGNNCC 3 cut(s) 22, 39, 352
PspOMI GGGCCC 2 cut(s) 20, 350
PspPI GGNCC 6 cut(s) 20, 21, 63, 350, 351, 697
PvuII CAGCTG 2 cut(s) 302, 340
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 5 cut(s) 113, 153, 171, 315, 708
SatI GCNGC 3 cut(s) 338, 753, 774
Sau3AI GATC 2 cut(s) 103, 268
Sau96I GGNCC 6 cut(s) 20, 21, 63, 350, 351, 697
SchI GAGTC 1 cut(s) 424
SduI GDGCHC 2 cut(s) 24, 354
SfaNI GCATC 3 cut(s) 389, 494, 571
SinI GGWCC 1 cut(s) 697
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 3 cut(s) 446, 550, 633
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 365, 516, 564
TaiI ACGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 367, 385
TasI AATT 3 cut(s) 446, 550, 633
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 5 cut(s) 113, 153, 171, 315, 708
Tru9I TTAA 5 cut(s) 113, 153, 171, 315, 708
TscAI CASTG 2 cut(s) 283, 519
TseFI GTSAC 2 cut(s) 295, 510
TseI GCWGC 3 cut(s) 337, 752, 773
Tsp45I GTSAC 2 cut(s) 295, 510
TspDTI ATGAA 1 cut(s) 726
TspRI CASTG 2 cut(s) 283, 519
Vha464I CTTAAG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 697
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 1 cut(s) 446
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.