FvH4_5g25820

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001817
Physical Location & Seq
Forward (+)
17313418 .. 17321558
8141 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25820.t1

Sequence Viewer

Length: 2877 bp
ATGGACCCGTCAATTATGAAGCTCTTGGAAGACGATGAGGATGAAACAATGCATTCGGGGGCCGATGTGGAGGCCTTTCAGGCGGCACTGAATAGGGACATTGAAGGAGATGTCTCTGCTTTGCAGCAGCCGTCTGATTCAGACTCTGCTGTTTTGTCTCAAGGAAGCAATAATACTTCTAGTCAATCATTACCACAATTGCAAAATGCTAGGCAGGATGAAAGTACTGCAGGTCAAATTCAACATGACCAAAATATTGCACAACAGCGAGAACTGCCATATGAAATGGAGTTAAAGCAACAACGTTCCATTTCTGAGAATATGCCCCAACAGAGTGATGCATCACAGGAACGACTTAATCATTTTCCGTTGCCCCAGAAGCAACCCCACGGAGATCTTCAGCAAGGGCAAGCAGATCAAAAACCTCTCCAGTCTGGAATGTTGATGTCCGGAAAGCATCCTGTCTCAACACAGGAGCAGGTCTTAACACCTAAACCAGAAAATGATTCTCAGTATGCAAAGCTTCAGAAGATAAGTAGTCAACAGGCAATGACCACGGAGCAGCCAAGCATCCCTGCGAATCGCAGTAAACAAGTACCATTTGGTCTGTTGCTACCTGTCTTATTACCCCAACTTGATAAAGACAGAGCCATGCAACTTACAACTCTTTTTAGTAAACTGAAGAACAATGAAATCTCCAAAGATGCTTTTGTTCGACACATTAGAAGTGTTGTTGGGGACCAGATGCTCAAGATGGCAGTACATAAAGTACAGACACAGCCTGTTCTCAAACAGCAGTTAACGCCTCAGGCTTCATTGCAGCAACAACCTCCTAGGATGCCATCTATTAATGCAGGTGCTACCCAGTTCACTGATCCTCGTTCATTTGCAATTCAACAGAGAGGTGTGAACCCTTCCACTGGTCCATCGCACATTACCACAGTTCCTGTGCAGACTGACTCAAGCCATTCAGCCATTGAAAACAGTGCCAAAAAATTGCGGGAAGCAGAACGTCAGTCTGATCCTCATGGAATGCAAATAAATCAGATGTCTTCTTCCAGCACAGGAGCTTCCAATCAAGAAAGGGACCGGTCCTCAGTTCCTATGCAAGTACATAGCAATCAGCAGCAACATCAATTGCACTACCCGCAATCAACCTTTGCCATGTATGGATCTACTGGTGGAAATTATCACCCATATCCAGGGACAAATGTCAGTACAATGCCTATCAAACAGCAACCACATGACTCTCATTTGAGGCCAATTCCTCAACATCAAGGCATGGGTTCAGCTCAGTCAGTTGGCGGAGAAACCCAGGGAACAAACATCATGAGTGTTCCCAAATTGGAGAGGCAAAATTCTGTGAACGACCCTGGCAGACAGCAGGGTGGATCTCTTCCTCACTTCACAAATAGTTCGACTTTGCAGCAACATCAAATTCCTTGGCAGTCTTCAAATAAAGAGCAGATTTCTGGCCCTTCATCATCAATGGCTTATGTAAAACAGGAACCCATTGACCAGAGTGCTGAGCAGCAGCACAAGACCCCACTATCTAATAATCAGCGTTTGCCTTATGCTTCTTCTCTGCAACTTGAACAAATAAGTGCTTCACCTGGAGTTTCAATGGATGAGTCTTTAGAGAAGCAGTCTTCAAGAATGGGATTTTCAAGTGCAGGGCCCCCTGGGAGCATGGTGATTTCCTCATCTACAAGCACAGGGCCCCCCTTGACTCCTATTTCTTCAACCACAATGACTCAAGCTGATCCTAATTTAGGCTCTAAGATACCTTCTGGAACTCCTGCTGGTACTAATAATAGAATACCTGCAAAAAAAACTTCTGTTGGCCAAAAGAAGCCTAGTGAAGCACTTGGTTCTCCACCACCGCCTTCAAGTGGTAAGAAGCAAAAAGTGTCTGGGGCTTTTTCGGATCAAAGCATTGAACAACTCAATGATGTCACGGCTGTTAGTGGAGTTAATCTAAGGGAAGAGGAGGAGCAGCTGTTTTCTGGGCCCAAAGATGACAGTCGAGCTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAAGAAGAAAGGCTGATTTTGCAGAAGACTCCCTTACAGAAAAAATTGGCAGAAATCATGTTCAGAAGTGGTCTGAAAAGTATAAGCCATGATGTGGAACGATGCTTGTCACTGTGTGTGGAGGAAAGAATGAGGGGACTGATAAATAATTTGATAAGATTGTCAAAGCAGCGGGTTGATGCTGAGAAAACAAAACACCACACCATCATTACCTCGGATGTTCAGCAACAAATTATGAATCAGAACAAGAAAGCTAAAGAAGAATGGGAAAAGAAGCAGGCTGAGGCAGAAAAGGTCCGGAAGCTTAATGAACCTGACCTTAGCAATGGAGTTGATGGTGATAAAGACAGAGATGAAGGTCGTTCAAAATCATTTAAGGCAAACAAAGAAGATGATGACAAAATGAGGACAACAGCAGCAAATGTTGCTGCTCGTGCTGCTGTTGGAGGAGATGACATGCTGTCAAAATGGCAACTTATGGCTGAGCAAGCTCGCCAAAAACGTGAAGGTGGGAGTGATGTGGCATCTGGGTCTCAGCCAGGTAAAGATGTAAATCGCAAGCCTACATCAGCAGCTGGAAGAATTATGAAGAACAATCAAGAAGCAGAGAAAAGAGGGGGTGCAGCTCCTGTTTCTGTAGCTGGGACTGTTAGAAAGTTTGGGAAAAATCAAGTTATGGTGCCTCAGACGAGGGTGGCTCGTAGTATATCTGTCAAGGATGTGATTTCTGTTCTGGAAAGGGAACCTCAAATGTCCAAGTCTCCTTTGATATATTGCTTGTATGAGAAAAATCAATCCGACTCTGTGAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

959

Amino Acids

105.03

Weight (kDa)

8.1

Isoelectric Point (pI)

61.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 194 - 258 1.6e-20 RCD1-SRO-TAF4 (RST) plant domain
TAF4 PF05236 649 - 946 3.4e-81 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 845
Acc36I ACCTGC 4 cut(s) 221, 469, 845, 1831
AccB1I GGYRCC 1 cut(s) 2740
AccB7I CCANNNNNTGG 1 cut(s) 2155
AccIII TCCGGA 2 cut(s) 449, 2358
AciI CCGC 6 cut(s) 83, 1000, 1148, 1305, 1883, 2233
AclI AACGTT 1 cut(s) 304
AclWI GGATC 6 cut(s) 869, 1016, 1180, 1399, 1757, 1935
AcoI YGGCCR 1 cut(s) 1843
AcsI RAATTY 3 cut(s) 237, 1357, 1437
AcuI CTGAAG 4 cut(s) 383, 509, 701, 2016
AdeI CACNNNGTG 1 cut(s) 2177
AfaI GTAC 7 cut(s) 226, 597, 762, 771, 1113, 1219, 1807
AfiI CCNNNNNNNGG 5 cut(s) 920, 1202, 1772, 1892, 2155
AgeI ACCGGT 1 cut(s) 1089
AhdI GACNNNNNGTC 1 cut(s) 2521
AjnI CCWGG 6 cut(s) 1201, 1314, 1372, 1612, 1681, 2599
Alw26I GTCTC 5 cut(s) 118, 162, 469, 2598, 2826
AlwI GGATC 6 cut(s) 869, 1016, 1180, 1399, 1757, 1935
AlwNI CAGNNNCTG 4 cut(s) 146, 947, 2636, 2690
Aor13HI TCCGGA 2 cut(s) 449, 2358
AoxI GGCC 8 cut(s) 60, 72, 1259, 1474, 1676, 1718, 1843, 2009
ApaI GGGCCC 3 cut(s) 1680, 1722, 2013
ApoI RAATTY 3 cut(s) 237, 1357, 1437
AseI ATTAAT 1 cut(s) 849
AsiGI ACCGGT 1 cut(s) 1089
AspA2I CCTAGG 1 cut(s) 833
AsuHPI GGTGA 4 cut(s) 1184, 1602, 1705, 2411
AvaII GGWCC 6 cut(s) 4, 739, 923, 1087, 1092, 2356
AvrII CCTAGG 1 cut(s) 833
AxyI CCTNAGG 1 cut(s) 807
BaeGI GKGCMC 3 cut(s) 1680, 1722, 2013
BalI TGGCCA 1 cut(s) 1845
BanI GGYRCC 1 cut(s) 2740
BanII GRGCYC 3 cut(s) 1680, 1722, 2013
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BauI CACGAG 1 cut(s) 2493
BbsI GAAGAC 5 cut(s) 36, 1044, 1443, 1641, 2093
BbvCI CCTCAGC 1 cut(s) 2343
BccI CCATC 5 cut(s) 748, 850, 934, 2273, 2390
BceAI ACGGC 2 cut(s) 115, 1974
BciT130I CCWGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
BcoDI GTCTC 5 cut(s) 118, 162, 469, 2598, 2826
BfaI CTAG 4 cut(s) 180, 210, 834, 1857
BfmI CTRYAG 2 cut(s) 228, 2697
BfuAI ACCTGC 4 cut(s) 221, 469, 845, 1831
BglI GCCNNNNNGGC 1 cut(s) 80
BglII AGATCT 1 cut(s) 394
BlnI CCTAGG 1 cut(s) 833
BlpI GCTNAGC 2 cut(s) 1527, 2544
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
Bme18I GGWCC 6 cut(s) 4, 739, 923, 1087, 1092, 2356
BmeRI GACNNNNNGTC 1 cut(s) 2521
BmrFI CCNGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
BmrI ACTGGG 1 cut(s) 859
BmuI ACTGGG 1 cut(s) 859
BoxI GACNNNNGTC 1 cut(s) 1211
BpiI GAAGAC 5 cut(s) 36, 1044, 1443, 1641, 2093
BplI GAGNNNNNCTC 2 cut(s) 2743, 2775
BpmI CTGGAG 2 cut(s) 413, 1635
Bpu10I CCTNAGC 2 cut(s) 2343, 2381
Bpu1102I GCTNAGC 2 cut(s) 1527, 2544
BpuEI CTTGAG 4 cut(s) 144, 734, 946, 1740
BsaBI GATNNNNATC 1 cut(s) 2613
BsaI GGTCTC 1 cut(s) 2598
BsaWI WCCGGW 3 cut(s) 449, 1089, 2358
BsaXI ACNNNNNCTCC 2 cut(s) 1985, 2015
Bsc4I CCNNNNNNNGG 5 cut(s) 920, 1202, 1772, 1892, 2155
Bse118I RCCGGY 1 cut(s) 1089
Bse1I ACTGG 4 cut(s) 430, 865, 925, 1183
Bse21I CCTNAGG 1 cut(s) 807
Bse3DI GCAATG 3 cut(s) 555, 815, 2392
Bse8I GATNNNNATC 1 cut(s) 2613
BseAI TCCGGA 2 cut(s) 449, 2358
BseBI CCWGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
BseGI GGATG 8 cut(s) 46, 223, 457, 570, 843, 1633, 2284, 2785
BseJI GATNNNNATC 1 cut(s) 2613
BseLI CCNNNNNNNGG 5 cut(s) 920, 1202, 1772, 1892, 2155
BseMI GCAATG 3 cut(s) 555, 815, 2392
BseNI ACTGG 4 cut(s) 430, 865, 925, 1183
BseRI GAGGAG 3 cut(s) 2003, 2006, 2523
BseSI GKGCMC 3 cut(s) 1680, 1722, 2013
BseYI CCCAGC 1 cut(s) 2702
BsgI GTGCAG 3 cut(s) 971, 1692, 2703
BshFI GGCC 8 cut(s) 62, 74, 1261, 1476, 1678, 1720, 1845, 2011
BshNI GGYRCC 1 cut(s) 2740
BshTI ACCGGT 1 cut(s) 1089
BsiSI CCGG 3 cut(s) 450, 1090, 2359
BslFI GGGAC 6 cut(s) 110, 752, 1100, 1219, 2211, 2719
BslI CCNNNNNNNGG 5 cut(s) 920, 1202, 1772, 1892, 2155
BsmAI GTCTC 5 cut(s) 118, 162, 469, 2598, 2826
BsmFI GGGAC 6 cut(s) 110, 752, 1100, 1219, 2211, 2719
BsmI GAATGC 2 cut(s) 52, 1038
BsnI GGCC 8 cut(s) 62, 74, 1261, 1476, 1678, 1720, 1845, 2011
Bso31I GGTCTC 1 cut(s) 2598
Bsp120I GGGCCC 3 cut(s) 1676, 1718, 2009
Bsp1286I GDGCHC 3 cut(s) 1680, 1722, 2013
Bsp13I TCCGGA 2 cut(s) 449, 2358
Bsp143I GATC 8 cut(s) 394, 415, 874, 1021, 1172, 1391, 1762, 1927
Bsp1720I GCTNAGC 2 cut(s) 1527, 2544
BspACI CCGC 6 cut(s) 83, 1000, 1148, 1305, 1883, 2233
BspANI GGCC 8 cut(s) 62, 74, 1261, 1476, 1678, 1720, 1845, 2011
BspEI TCCGGA 2 cut(s) 449, 2358
BspHI TCATGA 1 cut(s) 1329
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 4 cut(s) 221, 469, 845, 1831
BspPI GGATC 6 cut(s) 869, 1016, 1180, 1399, 1757, 1935
BspT107I GGYRCC 1 cut(s) 2740
BspTNI GGTCTC 1 cut(s) 2598
BsrDI GCAATG 3 cut(s) 555, 815, 2392
BsrFI RCCGGY 1 cut(s) 1089
BsrI ACTGG 4 cut(s) 430, 865, 925, 1183
BssAI RCCGGY 1 cut(s) 1089
BssMI GATC 8 cut(s) 394, 415, 874, 1021, 1172, 1391, 1762, 1927
BssSI CACGAG 1 cut(s) 2493
BssT1I CCWWGG 2 cut(s) 833, 1442
Bst2BI CACGAG 1 cut(s) 2493
Bst2UI CCWGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
Bst4CI ACNGT 5 cut(s) 943, 986, 2024, 2175, 2710
Bst6I CTCTTC 3 cut(s) 1401, 1980, 2041
BstAPI GCANNNNNTGC 1 cut(s) 2486
BstC8I GCNNGC 5 cut(s) 411, 2340, 2550, 2554, 2621
BstDSI CCRYGG 2 cut(s) 388, 555
BstENI CCTNNNNNAGG 1 cut(s) 1770
BstF5I GGATG 8 cut(s) 46, 223, 457, 570, 843, 1633, 2284, 2785
BstKTI GATC 8 cut(s) 397, 418, 877, 1024, 1175, 1394, 1765, 1930
BstMAI GTCTC 5 cut(s) 118, 162, 469, 2598, 2826
BstMBI GATC 8 cut(s) 394, 415, 874, 1021, 1172, 1391, 1762, 1927
BstNI CCWGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
BstNSI RCATGY 1 cut(s) 2521
BstPAI GACNNNNGTC 1 cut(s) 1211
BstSCI CCNGG 6 cut(s) 1201, 1314, 1372, 1612, 1681, 2599
BstSFI CTRYAG 2 cut(s) 228, 2697
BstSLI GKGCMC 3 cut(s) 1680, 1722, 2013
BstV2I GAAGAC 5 cut(s) 36, 1044, 1443, 1641, 2093
BstX2I RGATCY 3 cut(s) 394, 1172, 1391
BstYI RGATCY 3 cut(s) 394, 1172, 1391
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 8 cut(s) 62, 74, 1261, 1476, 1678, 1720, 1845, 2011
BtgI CCRYGG 2 cut(s) 388, 555
BtgZI GCGATG 1 cut(s) 912
BtsCI GGATG 8 cut(s) 46, 223, 457, 570, 843, 1633, 2284, 2785
BtsIMutI CAGTG 5 cut(s) 86, 870, 918, 991, 2171
BveI ACCTGC 4 cut(s) 221, 469, 845, 1831
Cac8I GCNNGC 5 cut(s) 411, 2340, 2550, 2554, 2621
CaiI CAGNNNCTG 4 cut(s) 146, 947, 2636, 2690
CciI TCATGA 1 cut(s) 1329
Cfr10I RCCGGY 1 cut(s) 1089
Csp6I GTAC 7 cut(s) 225, 596, 761, 770, 1112, 1218, 1806
CspAI ACCGGT 1 cut(s) 1089
CviQI GTAC 7 cut(s) 225, 596, 761, 770, 1112, 1218, 1806
DpnI GATC 8 cut(s) 396, 417, 876, 1023, 1174, 1393, 1764, 1929
DpnII GATC 8 cut(s) 394, 415, 874, 1021, 1172, 1391, 1762, 1927
DraIII CACNNNGTG 1 cut(s) 2177
DriI GACNNNNNGTC 1 cut(s) 2521
EaeI YGGCCR 1 cut(s) 1843
Eam1104I CTCTTC 3 cut(s) 1401, 1980, 2041
Eam1105I GACNNNNNGTC 1 cut(s) 2521
EarI CTCTTC 3 cut(s) 1401, 1980, 2041
EciI GGCGGA 1 cut(s) 1320
Eco130I CCWWGG 2 cut(s) 833, 1442
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 3 cut(s) 1680, 1722, 2013
Eco31I GGTCTC 1 cut(s) 2598
Eco47I GGWCC 6 cut(s) 4, 739, 923, 1087, 1092, 2356
Eco57I CTGAAG 4 cut(s) 383, 509, 701, 2016
Eco81I CCTNAGG 1 cut(s) 807
EcoNI CCTNNNNNAGG 1 cut(s) 1770
EcoO109I RGGNCCY 4 cut(s) 1676, 1677, 1718, 1719
EcoRII CCWGG 6 cut(s) 1201, 1314, 1372, 1612, 1681, 2599
EcoT14I CCWWGG 2 cut(s) 833, 1442
EcoT22I ATGCAT 2 cut(s) 54, 343
EcoT38I GRGCYC 3 cut(s) 1680, 1722, 2013
ErhI CCWWGG 2 cut(s) 833, 1442
FalI AAGNNNNNCTT 2 cut(s) 2078, 2110
FaqI GGGAC 6 cut(s) 110, 752, 1100, 1219, 2211, 2719
FauI CCCGC 3 cut(s) 993, 1155, 2226
FauNDI CATATG 1 cut(s) 280
FokI GGATG 8 cut(s) 53, 230, 444, 557, 850, 1640, 2291, 2792
FriOI GRGCYC 3 cut(s) 1680, 1722, 2013
FspBI CTAG 4 cut(s) 180, 210, 834, 1857
GsaI CCCAGC 1 cut(s) 2706
GsuI CTGGAG 2 cut(s) 413, 1635
HaeIII GGCC 8 cut(s) 62, 74, 1261, 1476, 1678, 1720, 1845, 2011
HapII CCGG 3 cut(s) 450, 1090, 2359
HincII GTYRAC 2 cut(s) 542, 801
HindII GTYRAC 2 cut(s) 542, 801
HindIII AAGCTT 2 cut(s) 521, 2363
HpaI GTTAAC 1 cut(s) 801
HpaII CCGG 3 cut(s) 450, 1090, 2359
HphI GGTGA 4 cut(s) 1184, 1602, 1705, 2411
Hpy166II GTNNAC 7 cut(s) 542, 590, 677, 801, 870, 910, 1366
Hpy8I GTNNAC 7 cut(s) 542, 590, 677, 801, 870, 910, 1366
HpyAV CCTTC 7 cut(s) 98, 924, 1488, 1797, 1896, 2411, 2561
HpyCH4III ACNGT 5 cut(s) 943, 986, 2024, 2175, 2710
HpyCH4IV ACGT 3 cut(s) 304, 1012, 2563
HpySE526I ACGT 3 cut(s) 304, 1012, 2563
Kpn2I TCCGGA 2 cut(s) 449, 2358
KspAI GTTAAC 1 cut(s) 801
Kzo9I GATC 8 cut(s) 394, 415, 874, 1021, 1172, 1391, 1762, 1927
LmnI GCTCC 6 cut(s) 475, 559, 1067, 1686, 1993, 2692
MaeI CTAG 4 cut(s) 180, 210, 834, 1857
MaeII ACGT 3 cut(s) 304, 1012, 2563
MaeIII GTNAC 2 cut(s) 1954, 2169
MalI GATC 8 cut(s) 396, 417, 876, 1023, 1174, 1393, 1764, 1929
MboI GATC 8 cut(s) 394, 415, 874, 1021, 1172, 1391, 1762, 1927
MfeI CAATTG 2 cut(s) 197, 1136
MflI RGATCY 3 cut(s) 394, 1172, 1391
MhlI GDGCHC 3 cut(s) 1680, 1722, 2013
MlsI TGGCCA 1 cut(s) 1845
MluNI TGGCCA 1 cut(s) 1845
MlyI GAGTC 8 cut(s) 137, 953, 1241, 1640, 1723, 1747, 2083, 2855
MmeI TCCRAC 1 cut(s) 2485
Mox20I TGGCCA 1 cut(s) 1845
Mph1103I ATGCAT 2 cut(s) 54, 343
MroI TCCGGA 2 cut(s) 449, 2358
MscI TGGCCA 1 cut(s) 1845
MseI TTAA 9 cut(s) 293, 357, 485, 800, 849, 1974, 2367, 2436, 2875
Msp20I TGGCCA 1 cut(s) 1845
MspA1I CMGCKG 3 cut(s) 1999, 2233, 2636
MspI CCGG 3 cut(s) 450, 1090, 2359
MspR9I CCNGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
MunI CAATTG 2 cut(s) 197, 1136
Mva1269I GAATGC 2 cut(s) 52, 1038
MvaI CCWGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
NdeI CATATG 1 cut(s) 280
NdeII GATC 8 cut(s) 394, 415, 874, 1021, 1172, 1391, 1762, 1927
NmuCI GTSAC 2 cut(s) 1954, 2169
NsiI ATGCAT 2 cut(s) 54, 343
NspI RCATGY 1 cut(s) 2521
PagI TCATGA 1 cut(s) 1329
PaqCI CACCTGC 1 cut(s) 845
PasI CCCWGGG 2 cut(s) 1315, 1682
PceI AGGCCT 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 2560
PctI GAATGC 2 cut(s) 52, 1038
PfeI GAWTC 4 cut(s) 137, 506, 580, 2299
PflMI CCANNNNNTGG 1 cut(s) 2155
PinAI ACCGGT 1 cut(s) 1089
PleI GAGTC 8 cut(s) 137, 953, 1241, 1639, 1723, 1747, 2083, 2855
PpsI GAGTC 8 cut(s) 137, 953, 1241, 1639, 1723, 1747, 2083, 2855
PshAI GACNNNNGTC 1 cut(s) 1211
PshBI ATTAAT 1 cut(s) 849
Psp1406I AACGTT 1 cut(s) 304
Psp6I CCWGG 6 cut(s) 1201, 1314, 1372, 1612, 1681, 2599
PspFI CCCAGC 1 cut(s) 2702
PspGI CCWGG 6 cut(s) 1201, 1314, 1372, 1612, 1681, 2599
PspOMI GGGCCC 3 cut(s) 1676, 1718, 2009
PstI CTGCAG 1 cut(s) 232
PstNI CAGNNNCTG 4 cut(s) 146, 947, 2636, 2690
PsuI RGATCY 3 cut(s) 394, 1172, 1391
PvuII CAGCTG 2 cut(s) 1999, 2636
RsaI GTAC 7 cut(s) 226, 597, 762, 771, 1113, 1219, 1807
RsaNI GTAC 7 cut(s) 225, 596, 761, 770, 1112, 1218, 1806
SaqAI TTAA 9 cut(s) 293, 357, 485, 800, 849, 1974, 2367, 2436, 2875
Sau3AI GATC 8 cut(s) 394, 415, 874, 1021, 1172, 1391, 1762, 1927
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 8 cut(s) 137, 953, 1241, 1640, 1723, 1747, 2083, 2855
ScrFI CCNGG 6 cut(s) 1203, 1316, 1374, 1614, 1683, 2601
SduI GDGCHC 3 cut(s) 1680, 1722, 2013
SfcI CTRYAG 2 cut(s) 228, 2697
SinI GGWCC 6 cut(s) 4, 739, 923, 1087, 1092, 2356
SmlI CTYRAG 4 cut(s) 159, 749, 961, 1755
SmoI CTYRAG 4 cut(s) 159, 749, 961, 1755
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 6 cut(s) 83, 1000, 1148, 1305, 1883, 2233
SspI AATATT 1 cut(s) 256
SspMI CTAG 4 cut(s) 180, 210, 834, 1857
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 6 cut(s) 1201, 1314, 1372, 1612, 1681, 2599
StyI CCWWGG 2 cut(s) 833, 1442
TaaI ACNGT 5 cut(s) 943, 986, 2024, 2175, 2710
TaiI ACGT 3 cut(s) 307, 1015, 2566
TaqI TCGA 4 cut(s) 715, 1418, 2026, 2044
TatI WGTACW 5 cut(s) 224, 760, 769, 1111, 1217
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 4 cut(s) 137, 506, 580, 2299
Tru1I TTAA 9 cut(s) 293, 357, 485, 800, 849, 1974, 2367, 2436, 2875
Tru9I TTAA 9 cut(s) 293, 357, 485, 800, 849, 1974, 2367, 2436, 2875
TscAI CASTG 5 cut(s) 93, 877, 925, 991, 2178
TseFI GTSAC 2 cut(s) 1954, 2169
Tsp45I GTSAC 2 cut(s) 1954, 2169
TspGWI ACGGA 3 cut(s) 357, 405, 572
TspRI CASTG 5 cut(s) 93, 877, 925, 991, 2178
Van91I CCANNNNNTGG 1 cut(s) 2155
VpaK11BI GGWCC 6 cut(s) 4, 739, 923, 1087, 1092, 2356
VspI ATTAAT 1 cut(s) 849
XagI CCTNNNNNAGG 1 cut(s) 1770
XapI RAATTY 3 cut(s) 237, 1357, 1437
XceI RCATGY 1 cut(s) 2521
XmaJI CCTAGG 1 cut(s) 833
XspI CTAG 4 cut(s) 180, 210, 834, 1857
ZrmI AGTACT 1 cut(s) 226
Zsp2I ATGCAT 2 cut(s) 54, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.