Rh1AG086900

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001817
Physical Location & Seq
Reverse (-)
14847614 .. 14866756
19143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG086900.1

Sequence Viewer

Length: 3717 bp
ATGACCCCGAAACTTTTCGACATCATTGAGCTTCCACCACTAGACACGCCCGGCCAAGTCAACGTCGCTAGTTCAGTCTTCACACAGCTCCCGGCCATTATGCTTGATGCCCGGTCCTCTCTCCGGTCCGCCATCTCATCCATGGACTTCAAGCCTGCAGCCATGATCGTCGATCTTTTTGGCACTGCTGTTCTTCCAGTGTCCGATGAGTTCCACATGCTCAAGTATGTAAGAGTCTCGTGTGCTTGGCCCCTTGCCCTGCTTTTATGCACTCTTATTCTAGATAAGGAGGTGGAAGGAGAATACTTGGATAAAAAAGAACCGCTCAAGATCCCGAGTTGCAAGCCTGTTCGACCGGAAGATGTTGTTAAGCCCATGATGAACAGAAAAGATCCCGAATACGAGTCCTTCATATGTATTGGAGTAGAGATAGCCGAGATGAGTGATGGGATTTTGGTTAACAATTGGGAAGATCTGGAGTCGATGAGTCTTAGACCCATGAGAGAGGATCCAAAGTGGAAGCAGATCCTTAAGGTTCCGGTCCATACTTTCCGTCCCATGATTAGGCCGGCAGGGCGCTCCACTCCGAGGAGCGAGGTGTTGGAGCTTAGCGCTCAGAGATTTATATGGGTAGTGCATCCACCAAGCAAAGATGGTGAGAAAGGCAATGACATTTCAAACTACTTGCCTGAAGAGTTCATGGCTCGGACTCGTGACAACGGTCTTGTGGTCACCAATTGGGCTCCTCAGAAAATGATTGCTATGTTTTTCGTGGAGGAGCTGAAGGTGGCCATTCGACCTAAAGTTCTGCTGGTAAAGAGGATAGTAAGGAGGGAGGATATTGAGATGATGGTGAGGAAGATTGTGGAGGAGAAAGAAGGAGATGAAATGAGGGCAAGAGCTAAAGAGCTGAAAAAGAGTGGGGAAGAAGCTTTGAGTGGAGGTGGGTCTTCGTTCAACACACTCTCTGCATTGGCCAAGCTCTGCCAGCACAACTCGCAACATCAGAAAGATGAAGCCATGTATTCAAGGGCTGATGTCGAGGCCTTCCAGGCTGCCATGAATAAGGACATAGAAGGAAATGTGTCTACTTCCCAGCTGTCTGATTCACACACTGCTGTTTTCTCTCAACGAAGCAATCGTACCTCTATTCAGCCATTACAGCAGTTTCATGCTGCTAGCCAGGATGAGAGTGCAGCTTCTCGAATTCGACATAACCAAAAGATTCTGCACCAGCAAGGACTGTATTCATTTGGACTGGAGCCAAAATCACAGCAGTTCTTTGCTGATTATAGACAACAAAAATATGATACTTCTGAGGAACTCAATCAGTTTCCTTTGCTTCAAGAAGTTGATCTCCAAAAAGGACAAGGAGAACAAAATACCAGCCAGATTCTTGAAACAACTGTAATGTCGATTCTGCAGAAAAATCCAATTTCACCACAGCAGGACATAACATCTAATCCAAAAAGTGAATTTCAGTATTTGAAGCTTCCGAAGATCGGTAGTCAAAAGGAAATGATCACAGAGCAGTCAAACATCCCAATACCATCTGAGATATTACTGCCTTGCTTATTGTCTCATCTTGATAGAAACAGAGGCTTGCAACTTACCACTCTATATGGTAAACTTCAGAAAAAAGAACTTTCCAGAACTGATTTTTTCCGTCAAATAAGACGTGTTGTCGGGGAGCAGATGGTCAGATCAACAGTAATGGAAATACAGTTACAGATGAAAAGCTTGCAGCCTGCTCCTGAATGCCAGTTATCGCCTTTGGCTCAACTACCTCCACGGATGTTTTCTATCAGTGCAGGTTCTACACAGTTGACTGATCCTCTTTCATTCTCACAATATCAGAGAGGCGCTAACTCTGCCACAGACCTATCAGACATTTCCTCCTCAACTGTTCAAGTGCAGGTTGATTCAAACCATTCTGTTGTTGAAAACAGTGCTAAAAATCTGATGGACACTGGAAGACAGTCAGATTCTCATGGAATGCAATTAAGTCAAATGTCTTCTTCTTGTACACGCGCTGCTGATCCTAAAAGCAAATGCTCCTCAGCATCCACGCGAGTACTTAATGAGAAGCGGCAACAACAATTGCACTACCCACAATCATCGGTTGCCATGTATGCAAATACTAGCGGTCAGTCAGGTGGGGAAGCACAGGAAATGAACATTATTGGTGTATCCAAATTAGTTATGCAAAACTCTGTGTTAGAACCTAGTAGACTGCAGGGTGGATCTCGTTTTCACTTTACAAATAATTCAACGTTACCGCAGAATTCAGTTCCTTGGCAATCCTCAAATAAAGGACAGAATTTTGGTCTTTTGTCCTCAATGGCTTATGTAAACCGGGGACCAGATGATCAGGCTTCTGATCAACAGCAGAAACCCCCATTAAATTCACAGGGATTGCCTTCTGTTTCTGCTCCACAAGTTGAACCAGAAAATGTATTGCCTGGAATATCAACAAATGAGTCTTTTGACAAGCATTCTTTAAAATCTACAAGCATAGTGCCTTCATCAGCAGCAACAACAGTTCCCACAAAACCTGTTTCTCCTCCCATAACAACACAAGTCGATGCTAATTTCACGTTAGGCCCTCATATTCATTCCAGAATTTCTCCTGCTGGAGTTGATAGTGGAACACCACCGGGGAACGCTTTTATTGGCAAAAAGAAGCCTCGTAAAGCAGTTGGTTCTTCACCACAACCAACAAGGAAGAAGCAAAAAGTATCTGGAGCTTTTTTGTATCAAAGCATTGAGCAGGAAAATGATGTTACTGCTGTTAGTGGCATTAATCTTAGGGAAGAGGAAGAGCAGCTTCTTTCTGGTCCCCAGGAGGATTCTCGAGCTTCAGAAGTATCAGGACAAGCTGTGCAAGAAGAAGAAGACGAGAGGCTGATTTTGCAGAAGACTCCCTTAATGAAAAAATTGGCAGAAATCGTGGTCAGATGTGGGTTGAAAAGTATAAGGAATGATGTGGAACAATGCTCGTCACTGTGTGTGGAGGAAAGAATGAGGGGACTAATATATAATTTGATTGGATTGTCAAAGCAGCGAGTGGATGCTCAGAAACCAAGATTCCACACTATTACTACCTCGAATGTTCAACTGCAAATTATGAATCTCAATTTGGCAGCTAGGAAAGAATGGAAAAAAAGGCAGGCGGAGGAACAAGCGGTCCAGAAGTTTAGTGAACTTGATGTTAGCAATGGAGTCAACCACAATAAGGACAAAGATCAAGGTCATTCTAAATTGTTTAAGGCAAATAAAGAAGAAGATGATAAAATGAGTGCAACAGCAGCAAATGTTGCGGTCCTTGCTGCTGTTGGAGGAGATGACATGTTGTCAAAATGGAAACTTATCGCTGAGCAAGCCAGGAAAAAGCGTGAAGGTGGGTTTAATGCTCCATCTGTGTCCCAGGATGTGAACCACAAGCCCACAACAGCGGGAAGAATTATGATGTACAATCGAGAAGCAGAGAAAATGTGCGATGGAGCTGGGACTACAAGAAATTTTGGAGAAAACCAAGTTGTCATGCCCCAAACAAGGGTGGTGCGTAGTATATCAGTTAAAGATGTGATTGCTGTTCTGGAACGGGAACCTTGGATGTCAAAGTCTCCTCTGACATATCTCTTATATGAGAGAAACCGTTCTGATATCACTGTTGAAGACTCCAAATTGCTAAATACAGTGCCTATCATATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

1238

Amino Acids

137.92

Weight (kDa)

8.02

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 516 - 575 1.3e-11 RCD1-SRO-TAF4 (RST) plant domain
TAF4 PF05236 926 - 1213 1.7e-63 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1802, 1906
AccBSI CCGCTC 1 cut(s) 325
AccI GTMKAC 2 cut(s) 1088, 2230
AccII CGCG 2 cut(s) 2031, 2071
AciI CCGC 9 cut(s) 129, 323, 2089, 2145, 2279, 3173, 3185, 3320, 3455
AclI AACGTT 1 cut(s) 2273
AclWI GGATC 8 cut(s) 325, 386, 503, 516, 520, 1826, 2033, 2251
AcoI YGGCCR 4 cut(s) 52, 93, 789, 975
AcsI RAATTY 7 cut(s) 1206, 1475, 2284, 2320, 2404, 2622, 3520
AcuI CTGAAG 4 cut(s) 711, 803, 1616, 2844
AdeI CACNNNGTG 1 cut(s) 3008
AfaI GTAC 4 cut(s) 1144, 2026, 2076, 3473
AfeI AGCGCT 1 cut(s) 613
AfiI CCNNNNNNNGG 7 cut(s) 123, 564, 588, 1502, 3235, 3555, 3556
AflII CTTAAG 1 cut(s) 530
AflIII ACRYGT 2 cut(s) 1678, 3348
AhdI GACNNNNNGTC 2 cut(s) 1682, 3352
AjiI CACGTC 1 cut(s) 1679
AjnI CCWGG 6 cut(s) 1050, 1182, 2461, 2841, 3383, 3426
AjuI GAANNNNNNNTTGG 2 cut(s) 3122, 3154
AloI GAACNNNNNNTCC 2 cut(s) 3171, 3203
Alw26I GTCTC 3 cut(s) 241, 1584, 3630
AlwI GGATC 8 cut(s) 325, 386, 503, 516, 520, 1826, 2033, 2251
Ama87I CYCGRG 2 cut(s) 334, 2853
Aor51HI AGCGCT 1 cut(s) 613
AoxI GGCC 8 cut(s) 52, 93, 248, 566, 789, 975, 1044, 2602
ApoI RAATTY 7 cut(s) 1206, 1475, 2284, 2320, 2404, 2622, 3520
AseI ATTAAT 1 cut(s) 2802
Asp700I GAANNNNTTC 2 cut(s) 14, 3658
AspLEI GCGC 4 cut(s) 579, 614, 1865, 2033
AspS9I GGNCC 9 cut(s) 114, 126, 249, 541, 2360, 2603, 2837, 3187, 3322
AsuC2I CCSGG 5 cut(s) 51, 92, 112, 2357, 2658
AsuHPI GGTGA 5 cut(s) 668, 724, 865, 1431, 2700
AsuNHI GCTAGC 1 cut(s) 1178
AvaI CYCGRG 2 cut(s) 334, 2853
AvaII GGWCC 7 cut(s) 114, 126, 541, 2360, 2837, 3187, 3322
BalI TGGCCA 2 cut(s) 791, 977
BamHI GGATCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 745
BarI GAAGNNNNNNTAC 2 cut(s) 1126, 1158
BauI CACGAG 2 cut(s) 238, 711
BbsI GAAGAC 7 cut(s) 70, 942, 1981, 2007, 2901, 2924, 3684
BbvCI CCTCAGC 1 cut(s) 2059
BccI CCATC 9 cut(s) 140, 440, 647, 844, 1558, 1690, 1957, 3424, 3494
BciT130I CCWGG 6 cut(s) 1052, 1184, 2463, 2843, 3385, 3428
BciVI GTATCC 1 cut(s) 2200
BclI TGATCA 3 cut(s) 1521, 2368, 2380
BcnI CCSGG 5 cut(s) 51, 92, 112, 2357, 2658
BcoDI GTCTC 3 cut(s) 241, 1584, 3630
BfaI CTAG 8 cut(s) 41, 69, 281, 1179, 2142, 2226, 3147, 3715
BfmI CTRYAG 3 cut(s) 156, 1421, 2234
BfoI RGCGCY 3 cut(s) 580, 615, 1866
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 2 cut(s) 1802, 1906
BfuI GTATCC 1 cut(s) 2200
BglI GCCNNNNNGGC 2 cut(s) 574, 1052
BglII AGATCT 1 cut(s) 472
BlpI GCTNAGC 2 cut(s) 608, 3375
BmcAI AGTACT 1 cut(s) 2076
Bme18I GGWCC 7 cut(s) 114, 126, 541, 2360, 2837, 3187, 3322
BmeRI GACNNNNNGTC 2 cut(s) 1682, 3352
BmeT110I CYCGRG 2 cut(s) 334, 2853
BmgBI CACGTC 1 cut(s) 1679
BmgT120I GGNCC 9 cut(s) 114, 126, 249, 541, 2360, 2603, 2837, 3187, 3322
BmiI GGNNCC 8 cut(s) 251, 510, 537, 744, 1263, 2361, 2839, 3609
BmsI GCATC 5 cut(s) 97, 646, 2072, 2575, 3061
BmtI GCTAGC 1 cut(s) 1182
BoxI GACNNNNGTC 1 cut(s) 720
BpiI GAAGAC 7 cut(s) 70, 942, 1981, 2007, 2901, 2924, 3684
BpmI CTGGAG 4 cut(s) 497, 1280, 2655, 2763
Bpu10I CCTNAGC 1 cut(s) 2059
Bpu1102I GCTNAGC 2 cut(s) 608, 3375
BpuEI CTTGAG 2 cut(s) 206, 311
BpuMI CCSGG 5 cut(s) 51, 92, 112, 2357, 2658
BsaJI CCNNGG 9 cut(s) 141, 587, 1790, 2294, 2356, 2657, 2841, 3426, 3611
BsaWI WCCGGW 3 cut(s) 123, 355, 538
BsaXI ACNNNNNCTCC 2 cut(s) 1880, 1910
Bsc4I CCNNNNNNNGG 7 cut(s) 123, 564, 588, 1502, 3235, 3555, 3556
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 4 cut(s) 197, 1263, 1762, 1975
Bse3DI GCAATG 2 cut(s) 673, 3223
BseBI CCWGG 6 cut(s) 1052, 1184, 2463, 2843, 3385, 3428
BseDI CCNNGG 9 cut(s) 141, 587, 1790, 2294, 2356, 2657, 2841, 3426, 3611
BseGI GGATG 9 cut(s) 137, 637, 1192, 1539, 1800, 2063, 3076, 3436, 3621
BseLI CCNNNNNNNGG 7 cut(s) 123, 564, 588, 1502, 3235, 3555, 3556
BseMI GCAATG 2 cut(s) 673, 3223
BseMII CTCAG 7 cut(s) 629, 761, 1308, 1545, 2073, 3089, 3366
BseNI ACTGG 4 cut(s) 197, 1263, 1762, 1975
BseRI GAGGAG 9 cut(s) 604, 735, 791, 884, 1888, 2047, 2553, 3354, 3618
BseYI CCCAGC 2 cut(s) 1095, 3506
BsgI GTGCAG 4 cut(s) 1214, 1215, 1830, 1934
Bsh1236I CGCG 2 cut(s) 2031, 2071
Bsh1285I CGRYCG 1 cut(s) 356
BshFI GGCC 8 cut(s) 54, 95, 250, 568, 791, 977, 1046, 2604
BsiEI CGRYCG 1 cut(s) 356
BsiHKCI CYCGRG 2 cut(s) 334, 2853
BsiSI CCGG 9 cut(s) 51, 92, 112, 124, 356, 539, 569, 2356, 2657
BslFI GGGAC 6 cut(s) 540, 2373, 2823, 3042, 3409, 3523
BslI CCNNNNNNNGG 7 cut(s) 123, 564, 588, 1502, 3235, 3555, 3556
BsmAI GTCTC 3 cut(s) 241, 1584, 3630
BsmFI GGGAC 6 cut(s) 540, 2373, 2823, 3042, 3409, 3523
BsmI GAATGC 3 cut(s) 1763, 2001, 2494
BsnI GGCC 8 cut(s) 54, 95, 250, 568, 791, 977, 1046, 2604
BsoBI CYCGRG 2 cut(s) 334, 2853
Bsp1286I GDGCHC 1 cut(s) 745
Bsp1407I TGTACA 2 cut(s) 2024, 3471
Bsp1720I GCTNAGC 2 cut(s) 608, 3375
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 9 cut(s) 129, 323, 2089, 2145, 2279, 3173, 3185, 3320, 3455
BspANI GGCC 8 cut(s) 54, 95, 250, 568, 791, 977, 1046, 2604
BspCNI CTCAG 7 cut(s) 628, 760, 1309, 1546, 2072, 3088, 3367
BspFNI CGCG 2 cut(s) 2031, 2071
BspLI GGNNCC 8 cut(s) 251, 510, 537, 744, 1263, 2361, 2839, 3609
BspMAI CTGCAG 3 cut(s) 160, 1425, 2238
BspMI ACCTGC 2 cut(s) 1802, 1906
BspOI GCTAGC 1 cut(s) 1182
BspPI GGATC 8 cut(s) 325, 386, 503, 516, 520, 1826, 2033, 2251
BspQI GCTCTTC 1 cut(s) 2814
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 2 cut(s) 673, 3223
BsrFI RCCGGY 1 cut(s) 568
BsrGI TGTACA 2 cut(s) 2024, 3471
BsrI ACTGG 4 cut(s) 197, 1263, 1762, 1975
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 9 cut(s) 141, 587, 1790, 2294, 2356, 2657, 2841, 3426, 3611
BssSI CACGAG 2 cut(s) 238, 711
BssT1I CCWWGG 3 cut(s) 141, 2294, 3611
Bst2BI CACGAG 2 cut(s) 238, 711
Bst2UI CCWGG 6 cut(s) 1052, 1184, 2463, 2843, 3385, 3428
Bst6I CTCTTC 3 cut(s) 687, 2808, 2814
BstAFI CTTAAG 1 cut(s) 530
BstAPI GCANNNNNTGC 1 cut(s) 3317
BstAUI TGTACA 2 cut(s) 2024, 3471
BstDSI CCRYGG 2 cut(s) 141, 1790
BstEII GGTNACC 1 cut(s) 730
BstF5I GGATG 9 cut(s) 137, 637, 1192, 1539, 1800, 2063, 3076, 3436, 3621
BstFNI CGCG 2 cut(s) 2031, 2071
BstH2I RGCGCY 3 cut(s) 580, 615, 1866
BstHHI GCGC 4 cut(s) 579, 614, 1865, 2033
BstMAI GTCTC 3 cut(s) 241, 1584, 3630
BstMCI CGRYCG 1 cut(s) 356
BstNI CCWGG 6 cut(s) 1052, 1184, 2463, 2843, 3385, 3428
BstNSI RCATGY 2 cut(s) 220, 3352
BstPAI GACNNNNGTC 1 cut(s) 720
BstPI GGTNACC 1 cut(s) 730
BstSFI CTRYAG 3 cut(s) 156, 1421, 2234
BstUI CGCG 2 cut(s) 2031, 2071
BstV2I GAAGAC 7 cut(s) 70, 942, 1981, 2007, 2901, 2924, 3684
BstX2I RGATCY 6 cut(s) 330, 391, 472, 508, 525, 2243
BstYI RGATCY 6 cut(s) 330, 391, 472, 508, 525, 2243
BsuI GTATCC 1 cut(s) 2200
BsuRI GGCC 8 cut(s) 54, 95, 250, 568, 791, 977, 1046, 2604
BtgI CCRYGG 2 cut(s) 141, 1790
BtgZI GCGATG 1 cut(s) 3513
BtrI CACGTC 1 cut(s) 1679
BtsCI GGATG 9 cut(s) 137, 637, 1192, 1539, 1800, 2063, 3076, 3436, 3621
BtsI GCAGTG 2 cut(s) 183, 1113
BtsIMutI CAGTG 9 cut(s) 183, 204, 1113, 1813, 1954, 1968, 3002, 3669, 3705
BveI ACCTGC 2 cut(s) 1802, 1906
CfoI GCGC 4 cut(s) 579, 614, 1865, 2033
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 9 cut(s) 114, 126, 249, 541, 2360, 2603, 2837, 3187, 3322
CpoI CGGWCCG 1 cut(s) 126
Csp6I GTAC 4 cut(s) 1143, 2025, 2075, 3472
CspI CGGWCCG 1 cut(s) 126
CviQI GTAC 4 cut(s) 1143, 2025, 2075, 3472
DraI TTTAAA 1 cut(s) 2502
DraIII CACNNNGTG 1 cut(s) 3008
DriI GACNNNNNGTC 2 cut(s) 1682, 3352
EaeI YGGCCR 4 cut(s) 52, 93, 789, 975
Eam1104I CTCTTC 3 cut(s) 687, 2808, 2814
Eam1105I GACNNNNNGTC 2 cut(s) 1682, 3352
EarI CTCTTC 3 cut(s) 687, 2808, 2814
EciI GGCGGA 2 cut(s) 118, 3188
Eco130I CCWWGG 3 cut(s) 141, 2294, 3611
Eco147I AGGCCT 1 cut(s) 1046
Eco24I GRGCYC 1 cut(s) 745
Eco32I GATATC 1 cut(s) 3667
Eco47I GGWCC 7 cut(s) 114, 126, 541, 2360, 2837, 3187, 3322
Eco47III AGCGCT 1 cut(s) 613
Eco57I CTGAAG 4 cut(s) 711, 803, 1616, 2844
Eco88I CYCGRG 2 cut(s) 334, 2853
Eco91I GGTNACC 1 cut(s) 730
EcoO109I RGGNCCY 1 cut(s) 2603
EcoO65I GGTNACC 1 cut(s) 730
EcoRI GAATTC 2 cut(s) 1206, 2284
EcoRII CCWGG 6 cut(s) 1050, 1182, 2461, 2841, 3383, 3426
EcoRV GATATC 1 cut(s) 3667
EcoT14I CCWWGG 3 cut(s) 141, 2294, 3611
EcoT38I GRGCYC 1 cut(s) 745
ErhI CCWWGG 3 cut(s) 141, 2294, 3611
FalI AAGNNNNNCTT 4 cut(s) 2811, 2843, 2909, 2941
FaqI GGGAC 6 cut(s) 540, 2373, 2823, 3042, 3409, 3523
FauI CCCGC 1 cut(s) 3448
FauNDI CATATG 1 cut(s) 413
FbaI TGATCA 3 cut(s) 1521, 2368, 2380
FblI GTMKAC 2 cut(s) 1088, 2230
FokI GGATG 9 cut(s) 124, 624, 1199, 1526, 1807, 2050, 3083, 3443, 3628
FriOI GRGCYC 1 cut(s) 745
FspBI CTAG 8 cut(s) 41, 69, 281, 1179, 2142, 2226, 3147, 3715
GlaI GCGC 4 cut(s) 578, 613, 1864, 2032
GsaI CCCAGC 2 cut(s) 1099, 3510
GsuI CTGGAG 4 cut(s) 497, 1280, 2655, 2763
HaeII RGCGCY 3 cut(s) 580, 615, 1866
HaeIII GGCC 8 cut(s) 54, 95, 250, 568, 791, 977, 1046, 2604
HapII CCGG 9 cut(s) 51, 92, 112, 124, 356, 539, 569, 2356, 2657
HhaI GCGC 4 cut(s) 579, 614, 1865, 2033
Hin6I GCGC 4 cut(s) 577, 612, 1863, 2031
HinP1I GCGC 4 cut(s) 577, 612, 1863, 2031
HincII GTYRAC 4 cut(s) 61, 460, 1827, 3226
HindII GTYRAC 4 cut(s) 61, 460, 1827, 3226
HindIII AAGCTT 3 cut(s) 930, 1490, 1738
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 9 cut(s) 51, 92, 112, 124, 356, 539, 569, 2356, 2657
HphI GGTGA 5 cut(s) 668, 724, 865, 1431, 2700
Hpy99I CGWCG 2 cut(s) 68, 173
HpyAV CCTTC 9 cut(s) 290, 418, 778, 872, 1057, 1070, 2430, 2532, 3392
HpyCH4IV ACGT 4 cut(s) 63, 1678, 2273, 2597
HpySE526I ACGT 4 cut(s) 63, 1678, 2273, 2597
HspAI GCGC 4 cut(s) 577, 612, 1863, 2031
KroI GCCGGC 1 cut(s) 568
KroNI GCCGGC 1 cut(s) 570
Ksp22I TGATCA 3 cut(s) 1521, 2368, 2380
KspAI GTTAAC 1 cut(s) 460
LguI GCTCTTC 1 cut(s) 2814
LweI GCATC 5 cut(s) 97, 646, 2072, 2575, 3061
MaeI CTAG 8 cut(s) 41, 69, 281, 1179, 2142, 2226, 3147, 3715
MaeII ACGT 4 cut(s) 63, 1678, 2273, 2597
MaeIII GTNAC 6 cut(s) 713, 730, 1725, 2274, 2782, 3000
MbiI CCGCTC 1 cut(s) 325
MfeI CAATTG 3 cut(s) 463, 736, 2099
MflI RGATCY 6 cut(s) 330, 391, 472, 508, 525, 2243
MhlI GDGCHC 1 cut(s) 745
MlsI TGGCCA 2 cut(s) 791, 977
MluNI TGGCCA 2 cut(s) 791, 977
MlyI GAGTC 9 cut(s) 243, 413, 488, 496, 703, 2489, 2914, 3231, 3674
MmeI TCCRAC 2 cut(s) 582, 3316
Mox20I TGGCCA 2 cut(s) 791, 977
MroNI GCCGGC 1 cut(s) 568
MroXI GAANNNNTTC 2 cut(s) 14, 3658
MscI TGGCCA 2 cut(s) 791, 977
Msp20I TGGCCA 2 cut(s) 791, 977
MspA1I CMGCKG 2 cut(s) 1099, 3455
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 9 cut(s) 51, 92, 112, 124, 356, 539, 569, 2356, 2657
MunI CAATTG 3 cut(s) 463, 736, 2099
Mva1269I GAATGC 3 cut(s) 1763, 2001, 2494
MvaI CCWGG 6 cut(s) 1052, 1184, 2463, 2843, 3385, 3428
MvnI CGCG 2 cut(s) 2031, 2071
NaeI GCCGGC 1 cut(s) 570
NciI CCSGG 5 cut(s) 51, 92, 112, 2357, 2658
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 413
NgoMIV GCCGGC 1 cut(s) 568
NheI GCTAGC 1 cut(s) 1178
NlaIV GGNNCC 8 cut(s) 251, 510, 537, 744, 1263, 2361, 2839, 3609
NmeAIII GCCGAG 1 cut(s) 460
NmuCI GTSAC 3 cut(s) 713, 730, 3000
NspI RCATGY 2 cut(s) 220, 3352
PaeR7I CTCGAG 1 cut(s) 2853
PceI AGGCCT 1 cut(s) 1046
PciI ACATGT 1 cut(s) 3348
PciSI GCTCTTC 1 cut(s) 2814
PcsI WCGNNNNNNNCGW 1 cut(s) 1138
PctI GAATGC 3 cut(s) 1763, 2001, 2494
PdiI GCCGGC 1 cut(s) 570
PdmI GAANNNNTTC 2 cut(s) 14, 3658
PfeI GAWTC 9 cut(s) 1106, 1225, 1393, 1417, 1922, 1985, 2849, 3087, 3130
PleI GAGTC 9 cut(s) 242, 412, 487, 495, 703, 2488, 2914, 3230, 3674
PpsI GAGTC 9 cut(s) 242, 412, 487, 495, 703, 2488, 2914, 3230, 3674
PscI ACATGT 1 cut(s) 3348
PshAI GACNNNNGTC 1 cut(s) 720
PshBI ATTAAT 1 cut(s) 2802
Psp1406I AACGTT 1 cut(s) 2273
Psp6I CCWGG 6 cut(s) 1050, 1182, 2461, 2841, 3383, 3426
PspEI GGTNACC 1 cut(s) 730
PspFI CCCAGC 2 cut(s) 1095, 3506
PspGI CCWGG 6 cut(s) 1050, 1182, 2461, 2841, 3383, 3426
PspN4I GGNNCC 8 cut(s) 251, 510, 537, 744, 1263, 2361, 2839, 3609
PspPI GGNCC 9 cut(s) 114, 126, 249, 541, 2360, 2603, 2837, 3187, 3322
PstI CTGCAG 3 cut(s) 160, 1425, 2238
PsuI RGATCY 6 cut(s) 330, 391, 472, 508, 525, 2243
PvuII CAGCTG 1 cut(s) 1099
RsaI GTAC 4 cut(s) 1144, 2026, 2076, 3473
RsaNI GTAC 4 cut(s) 1143, 2025, 2075, 3472
Rsr2I CGGWCCG 1 cut(s) 126
RsrII CGGWCCG 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 2814
Sau96I GGNCC 9 cut(s) 114, 126, 249, 541, 2360, 2603, 2837, 3187, 3322
ScaI AGTACT 1 cut(s) 2076
SchI GAGTC 9 cut(s) 243, 413, 488, 496, 703, 2489, 2914, 3231, 3674
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 5 cut(s) 97, 646, 2072, 2575, 3061
SfcI CTRYAG 3 cut(s) 156, 1421, 2234
Sfr274I CTCGAG 1 cut(s) 2853
SinI GGWCC 7 cut(s) 114, 126, 541, 2360, 2837, 3187, 3322
SlaI CTCGAG 1 cut(s) 2853
SmlI CTYRAG 4 cut(s) 221, 326, 530, 2853
SmoI CTYRAG 4 cut(s) 221, 326, 530, 2853
SseBI AGGCCT 1 cut(s) 1046
SsiI CCGC 9 cut(s) 129, 323, 2089, 2145, 2279, 3173, 3185, 3320, 3455
SspMI CTAG 8 cut(s) 41, 69, 281, 1179, 2142, 2226, 3147, 3715
StuI AGGCCT 1 cut(s) 1046
StyI CCWWGG 3 cut(s) 141, 2294, 3611
TaiI ACGT 4 cut(s) 66, 1681, 2276, 2600
TatI WGTACW 3 cut(s) 2024, 2074, 3471
TauI GCSGC 1 cut(s) 2092
TfiI GAWTC 9 cut(s) 1106, 1225, 1393, 1417, 1922, 1985, 2849, 3087, 3130
TscAI CASTG 9 cut(s) 190, 204, 1120, 1813, 1954, 1975, 3009, 3676, 3705
TseFI GTSAC 3 cut(s) 713, 730, 3000
Tsp45I GTSAC 3 cut(s) 713, 730, 3000
TspGWI ACGGA 3 cut(s) 542, 1655, 1807
TspRI CASTG 9 cut(s) 190, 204, 1120, 1813, 1954, 1975, 3009, 3676, 3705
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 7 cut(s) 114, 126, 541, 2360, 2837, 3187, 3322
VspI ATTAAT 1 cut(s) 2802
XapI RAATTY 7 cut(s) 1206, 1475, 2284, 2320, 2404, 2622, 3520
XbaI TCTAGA 1 cut(s) 280
XceI RCATGY 2 cut(s) 220, 3352
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 2853
XmiI GTMKAC 2 cut(s) 1088, 2230
XmnI GAANNNNTTC 2 cut(s) 14, 3658
XspI CTAG 8 cut(s) 41, 69, 281, 1179, 2142, 2226, 3147, 3715
ZrmI AGTACT 1 cut(s) 2076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.