Rorug07G0159700

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001817
Physical Location & Seq
Forward (+)
12738466 .. 12740700
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0159700.1

Sequence Viewer

Length: 1020 bp
ATGTCTTCTGATCTCTTTGTTGACGATGCCTCCTTGTACCGCCATTCCTATGAAACAGACCTCTTGTCTGACCCCTTCTCTCCTTTCTCAGACTCAGCTCTTGACATCCTTCAAGCAATCTCTGACCACCGAAACGTACAAAACCCAGTTGAGGATCAGCCTCATTCTTTTGAGCAAAGCTCCCCAAATCCTGTTTCTTCTTCACCCCCAAGTTATCAATCGGGAAGTTTGAGCCTTTACCAAGCAACCCATCTGGGCCCTCTTGAAAATGGTCCCAGTTTGGGAGATGCCTTGGGAAATTTCTCAGCTTTGGACATTTTAGGGGAGGTGAAAACTGAGCAATGTCATGTGGGTTTTGACCAGAATGCTCATAATTACAACACCCAACACGCTTTTTCTCCTCACAGTTACAGTGGTGGTGCTGAAAATGTGGCCAAATTTATGCAGAGGAGCTATAGCAGCAACTCCTTTGACGGAAAGCCTGGCTTTGTTTTCCAACCTCGCTTCGATTCTCTCATGGAATCCCCAAATTTTCAGAACCAAGCAGCCTCCTTGAGCTCACCTGAGAGCAGCTACTTGACAAGTCAAATGAGAAGGGTTTCCAGCACTGGAGATTTACAAAATTTCAAAACTGCTCGTAATCCTCGAGAGAGCTCGGCCATGGAGGAAGCTGGGAGCTTCAAGATGGGGAAGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAGTACAGAGCTAAGAGATCACAGAGAAACTTCAACAAGACTATCAAGTATGCATGCCGAAAGACACTAGCAGACAACCGTCCACGCATACGTGGAAGATTTGCGCGAAATGATGAAACTGGTGAGATCCTCAAACCTGCATGTTCAACCAGAGAAGAGGACGAAGATGATCTCTGGATTGAAGGGTTGAATGTAGAAGAGGAATTAGGGGATGGGACAGTAAGAGGAGGACAGCAGTGTATGAACAACAACTTTGGACCTCCGCAGTTCCAGTACTATGGCTATTATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

339

Amino Acids

38.03

Weight (kDa)

5.35

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 237 - 279 5.2e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 871
AccII CGCG 1 cut(s) 832
AciI CCGC 2 cut(s) 40, 989
AclWI GGATC 2 cut(s) 162, 847
AcoI YGGCCR 2 cut(s) 432, 657
AcsI RAATTY 4 cut(s) 298, 437, 529, 622
AfaI GTAC 5 cut(s) 38, 138, 695, 731, 1001
AfiI CCNNNNNNNGG 2 cut(s) 151, 281
AgsI TTSAA 9 cut(s) 113, 266, 628, 682, 726, 760, 873, 908, 916
AhdI GACNNNNNGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
Alw21I GWGCWC 2 cut(s) 560, 656
AlwI GGATC 2 cut(s) 162, 847
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 3 cut(s) 256, 432, 657
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 459, 545, 570
ApoI RAATTY 4 cut(s) 298, 437, 529, 622
Asp700I GAANNNNTTC 1 cut(s) 598
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 4 cut(s) 256, 257, 272, 983
AsuHPI GGTGA 4 cut(s) 195, 340, 552, 860
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 2 cut(s) 272, 983
BaeGI GKGCMC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 3 cut(s) 260, 560, 656
Bbv12I GWGCWC 2 cut(s) 560, 656
BbvI GCAGC 3 cut(s) 471, 557, 582
BccI CCATC 3 cut(s) 258, 679, 932
BciT130I CCWGG 1 cut(s) 483
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 871
BisI GCNGC 3 cut(s) 460, 546, 571
BlsI GCNGC 3 cut(s) 461, 547, 572
BmcAI AGTACT 1 cut(s) 1001
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 2 cut(s) 272, 983
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 4 cut(s) 256, 257, 272, 983
BmiI GGNNCC 2 cut(s) 258, 274
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 2 cut(s) 140, 270
BmsI GCATC 2 cut(s) 16, 277
BmuI ACTGGG 2 cut(s) 140, 270
BoxI GACNNNNGTC 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 574
BsaAI YACGTR 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 291, 660
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 281
Bse1I ACTGG 5 cut(s) 146, 276, 613, 850, 997
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 291, 660
BseGI GGATG 2 cut(s) 105, 943
BseLI CCNNNNNNNGG 2 cut(s) 151, 281
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 5 cut(s) 102, 108, 318, 327, 555
BseNI ACTGG 5 cut(s) 146, 276, 613, 850, 997
BseRI GAGGAG 4 cut(s) 390, 463, 719, 966
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 3 cut(s) 471, 557, 582
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 832
BshFI GGCC 3 cut(s) 258, 434, 659
BsiHKAI GWGCWC 2 cut(s) 560, 656
BsiHKCI CYCGRG 1 cut(s) 645
BslFI GGGAC 2 cut(s) 258, 955
BslI CCNNNNNNNGG 2 cut(s) 151, 281
BsmFI GGGAC 2 cut(s) 258, 955
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 3 cut(s) 258, 434, 659
BsoBI CYCGRG 1 cut(s) 645
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 260, 560, 656
Bsp143I GATC 5 cut(s) 10, 154, 743, 852, 895
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 2 cut(s) 40, 989
BspANI GGCC 3 cut(s) 258, 434, 659
BspCNI CTCAG 5 cut(s) 101, 107, 317, 328, 556
BspFNI CGCG 1 cut(s) 832
BspLI GGNNCC 2 cut(s) 258, 274
BspMI ACCTGC 1 cut(s) 871
BspPI GGATC 2 cut(s) 162, 847
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 5 cut(s) 146, 276, 613, 850, 997
BssECI CCNNGG 2 cut(s) 291, 660
BssMI GATC 5 cut(s) 10, 154, 743, 852, 895
BssT1I CCWWGG 2 cut(s) 291, 660
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 5 cut(s) 407, 413, 698, 806, 946
Bst6I CTCTTC 2 cut(s) 876, 918
BstBAI YACGTR 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 105, 943
BstFNI CGCG 1 cut(s) 832
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 5 cut(s) 13, 157, 746, 855, 898
BstMBI GATC 5 cut(s) 10, 154, 743, 852, 895
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 2 cut(s) 783, 870
BstPAI GACNNNNGTC 1 cut(s) 804
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 832
BstV1I GCAGC 3 cut(s) 471, 557, 582
BstX2I RGATCY 1 cut(s) 852
BstXI CCANNNNNNTGG 1 cut(s) 1004
BstYI RGATCY 1 cut(s) 852
BsuRI GGCC 3 cut(s) 258, 434, 659
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 2 cut(s) 105, 943
BtsI GCAGTG 1 cut(s) 968
BtsIMutI CAGTG 4 cut(s) 418, 606, 703, 968
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 1 cut(s) 781
CfoI GCGC 1 cut(s) 832
Cfr13I GGNCC 4 cut(s) 256, 257, 272, 983
Csp6I GTAC 5 cut(s) 37, 137, 694, 730, 1000
CviAII CATG 5 cut(s) 347, 517, 661, 780, 867
CviQI GTAC 5 cut(s) 37, 137, 694, 730, 1000
DdeI CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
DpnI GATC 5 cut(s) 12, 156, 745, 854, 897
DpnII GATC 5 cut(s) 10, 154, 743, 852, 895
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 2 cut(s) 432, 657
Eam1104I CTCTTC 2 cut(s) 876, 918
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 2 cut(s) 876, 918
Ecl136II GAGCTC 2 cut(s) 558, 654
Eco130I CCWWGG 2 cut(s) 291, 660
Eco24I GRGCYC 3 cut(s) 260, 560, 656
Eco47I GGWCC 2 cut(s) 272, 983
Eco53kI GAGCTC 2 cut(s) 558, 654
Eco88I CYCGRG 1 cut(s) 645
EcoICRI GAGCTC 2 cut(s) 558, 654
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 291, 660
EcoT22I ATGCAT 1 cut(s) 781
EcoT38I GRGCYC 3 cut(s) 260, 560, 656
ErhI CCWWGG 2 cut(s) 291, 660
FaeI CATG 5 cut(s) 350, 520, 664, 783, 870
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 2 cut(s) 258, 955
FatI CATG 5 cut(s) 346, 516, 660, 779, 866
Fnu4HI GCNGC 3 cut(s) 460, 546, 571
FokI GGATG 2 cut(s) 92, 950
FriOI GRGCYC 3 cut(s) 260, 560, 656
Fsp4HI GCNGC 3 cut(s) 460, 546, 571
FspBI CTAG 1 cut(s) 794
GlaI GCGC 1 cut(s) 831
GluI GCNGC 3 cut(s) 460, 546, 571
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 3 cut(s) 258, 434, 659
HhaI GCGC 1 cut(s) 832
Hin1II CATG 5 cut(s) 350, 520, 664, 783, 870
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 92, 509, 521
HphI GGTGA 4 cut(s) 195, 340, 552, 860
Hpy166II GTNNAC 2 cut(s) 22, 809
Hpy188I TCNGA 5 cut(s) 10, 70, 91, 124, 537
Hpy188III TCNNGA 6 cut(s) 101, 222, 263, 647, 682, 901
Hpy8I GTNNAC 2 cut(s) 22, 809
HpyAV CCTTC 4 cut(s) 85, 119, 588, 902
HpyCH4III ACNGT 5 cut(s) 407, 413, 698, 806, 946
HpyCH4IV ACGT 2 cut(s) 135, 817
HpyCH4V TGCA 4 cut(s) 445, 701, 779, 866
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
HpySE526I ACGT 2 cut(s) 135, 817
Hsp92II CATG 5 cut(s) 350, 520, 664, 783, 870
HspAI GCGC 1 cut(s) 830
Kzo9I GATC 5 cut(s) 10, 154, 743, 852, 895
LmnI GCTCC 3 cut(s) 185, 450, 675
Lsp1109I GCAGC 3 cut(s) 471, 557, 582
LweI GCATC 2 cut(s) 16, 277
MaeI CTAG 1 cut(s) 794
MaeII ACGT 2 cut(s) 135, 817
MaeIII GTNAC 1 cut(s) 407
MalI GATC 5 cut(s) 12, 156, 745, 854, 897
MboI GATC 5 cut(s) 10, 154, 743, 852, 895
MboII GAAGA 6 cut(s) 189, 192, 834, 893, 902, 935
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 3 cut(s) 260, 560, 656
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 6 cut(s) 298, 373, 437, 529, 622, 929
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 520
Mox20I TGGCCA 1 cut(s) 434
Mph1103I ATGCAT 1 cut(s) 781
MroXI GAANNNNTTC 1 cut(s) 598
MscI TGGCCA 1 cut(s) 434
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 832
MwoI GCNNNNNNNGC 1 cut(s) 459
NcoI CCATGG 1 cut(s) 660
NdeII GATC 5 cut(s) 10, 154, 743, 852, 895
NlaIII CATG 5 cut(s) 350, 520, 664, 783, 870
NlaIV GGNNCC 2 cut(s) 258, 274
NmeAIII GCCGAG 1 cut(s) 635
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 2 cut(s) 783, 870
PaeI GCATGC 1 cut(s) 783
PaeR7I CTCGAG 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 643
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 509, 521
PkrI GCNGC 3 cut(s) 461, 547, 572
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 818
PshAI GACNNNNGTC 1 cut(s) 804
Psp124BI GAGCTC 2 cut(s) 560, 656
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 258, 274
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 4 cut(s) 256, 257, 272, 983
PsuI RGATCY 1 cut(s) 852
RsaI GTAC 5 cut(s) 38, 138, 695, 731, 1001
RsaNI GTAC 5 cut(s) 37, 137, 694, 730, 1000
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 2 cut(s) 560, 656
SatI GCNGC 3 cut(s) 460, 546, 571
Sau3AI GATC 5 cut(s) 10, 154, 743, 852, 895
Sau96I GGNCC 4 cut(s) 256, 257, 272, 983
ScaI AGTACT 1 cut(s) 1001
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 3 cut(s) 260, 560, 656
SfaNI GCATC 2 cut(s) 16, 277
SfcI CTRYAG 1 cut(s) 454
Sfr274I CTCGAG 1 cut(s) 645
SinI GGWCC 2 cut(s) 272, 983
SlaI CTCGAG 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 2 cut(s) 553, 645
SmoI CTYRAG 2 cut(s) 553, 645
SphI GCATGC 1 cut(s) 783
Sse9I AATT 6 cut(s) 298, 373, 437, 529, 622, 929
SsiI CCGC 2 cut(s) 40, 989
SspMI CTAG 1 cut(s) 794
SstI GAGCTC 2 cut(s) 560, 656
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 291, 660
TaaI ACNGT 5 cut(s) 407, 413, 698, 806, 946
TaiI ACGT 2 cut(s) 138, 820
TaqI TCGA 2 cut(s) 507, 646
TasI AATT 6 cut(s) 298, 373, 437, 529, 622, 929
TatI WGTACW 3 cut(s) 693, 729, 999
TfiI GAWTC 2 cut(s) 509, 521
TscAI CASTG 4 cut(s) 418, 613, 703, 968
TseI GCWGC 3 cut(s) 459, 545, 570
TspDTI ATGAA 3 cut(s) 66, 855, 983
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 4 cut(s) 418, 613, 703, 968
VpaK11BI GGWCC 2 cut(s) 272, 983
XapI RAATTY 4 cut(s) 298, 437, 529, 622
XceI RCATGY 2 cut(s) 783, 870
XhoI CTCGAG 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 1 cut(s) 794
ZrmI AGTACT 1 cut(s) 1001
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.