pycom16g26120

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001817
Physical Location & Seq
Forward (+)
28384272 .. 28386369
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26120.2

Sequence Viewer

Length: 582 bp
ATGAATCTCAACCAGAATGCCAGGGAAGAATTTGAAAAAAAGCAGGCCGAGGCAGAAAAGCTCCGAAAGCTTAATGAACCTGAGGTTAGCAATGGAGTTGATGGTGATAAGGACAAGGATGAAGGTCGTTCTAAATCATTCAAGCCAAACAAAGAGGAAGATGACAAAATGAGGACAACAGCAGCAAATGTTGCTGCCCGAGCTGCTGTTGGAGGAGATGACATGTTGTCAAAATGGCAACTTATGGCTGAGCAAGCCCGGCAAAAACGTGAAGGTGGGATTGATGTGGCATCTGTGTCCCACCCAGGTAAAGATGTAAATCGCAAGCCTACATCAACAGCTGGAAGAACTATGAAGGACAATCAAGAAGCAGAGAAAAGAGGCGGTGGAACTCCTGTTGCTTCAGCTGGGACTATTAGGAAATGTGGAAGGAACCAAGTTATTGTGCCTCAAACAAAGGTGGCTCGTAGTATATCTGTTAAGGATGTGATTGCTGTCCTAGAGAGAGAACCTCAGATGTCGAGGTCTACTATGATATATCGCTTGTTCGAGAGAATTCAATCTGACAACACTGGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

194

Amino Acids

21.34

Weight (kDa)

9.3

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 527
AciI CCGC 1 cut(s) 384
AcsI RAATTY 2 cut(s) 29, 555
AcuI CTGAAG 1 cut(s) 387
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 3 cut(s) 35, 142, 560
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 20, 304
AluBI AGCT 5 cut(s) 61, 70, 203, 341, 407
AluI AGCT 5 cut(s) 61, 70, 203, 341, 407
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 182, 194, 203
ApoI RAATTY 2 cut(s) 29, 555
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 198
AxyI CCTNAGG 1 cut(s) 81
BbvI GCAGC 3 cut(s) 181, 190, 194
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 22, 306
BcnI CCSGG 1 cut(s) 259
BfaI CTAG 1 cut(s) 500
BisI GCNGC 3 cut(s) 183, 195, 204
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 3 cut(s) 184, 196, 205
Bme1390I CCNGG 3 cut(s) 22, 259, 306
BmeRI GACNNNNNGTC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 434
BmrFI CCNGG 3 cut(s) 22, 259, 306
BmsI GCATC 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 496, 528
Bpu1102I GCTNAGC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 21, 48, 304
Bse1I ACTGG 1 cut(s) 577
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 2 cut(s) 22, 306
BseDI CCNNGG 3 cut(s) 21, 48, 304
BseGI GGATG 2 cut(s) 124, 490
BseJI GATNNNNATC 1 cut(s) 318
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 3 cut(s) 72, 240, 527
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 3 cut(s) 181, 190, 194
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 2 cut(s) 283, 424
BsmFI GGGAC 2 cut(s) 283, 424
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 198
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 1 cut(s) 384
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 3 cut(s) 73, 241, 526
BspLI GGNNCC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 3 cut(s) 21, 48, 304
Bst2UI CCWGG 2 cut(s) 22, 306
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 45, 255, 326
BstDEI CTNAG 3 cut(s) 81, 249, 513
BstF5I GGATG 2 cut(s) 124, 490
BstMWI GCNNNNNNNGC 6 cut(s) 67, 191, 200, 203, 254, 259
BstNI CCWGG 2 cut(s) 22, 306
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 20, 257, 304
BstV1I GCAGC 3 cut(s) 181, 190, 194
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 124, 490
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 3 cut(s) 45, 255, 326
CviAII CATG 1 cut(s) 223
DdeI CTNAG 3 cut(s) 81, 249, 513
DriI GACNNNNNGTC 1 cut(s) 226
Eam1105I GACNNNNNGTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 387
Eco81I CCTNAGG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 555
EcoRII CCWGG 2 cut(s) 20, 304
FaeI CATG 1 cut(s) 226
FaiI YATR 6 cut(s) 224, 245, 353, 473, 533, 538
FaqI GGGAC 2 cut(s) 283, 424
FatI CATG 1 cut(s) 222
FblI GTMKAC 1 cut(s) 527
Fnu4HI GCNGC 3 cut(s) 183, 195, 204
FokI GGATG 2 cut(s) 131, 497
Fsp4HI GCNGC 3 cut(s) 183, 195, 204
FspBI CTAG 1 cut(s) 500
GluI GCNGC 3 cut(s) 183, 195, 204
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 259
Hin1II CATG 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 259
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 3 cut(s) 65, 516, 565
Hpy188III TCNNGA 2 cut(s) 365, 550
Hpy8I GTNNAC 1 cut(s) 528
HpyAV CCTTC 4 cut(s) 116, 266, 349, 423
HpyCH4IV ACGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 191, 200, 203, 254, 259
HpyF3I CTNAG 3 cut(s) 81, 249, 513
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 1 cut(s) 226
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 3 cut(s) 181, 190, 194
LweI GCATC 1 cut(s) 299
MaeI CTAG 1 cut(s) 500
MaeII ACGT 1 cut(s) 268
MboII GAAGA 3 cut(s) 38, 170, 357
MluCI AATT 2 cut(s) 29, 555
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 9 cut(s) 43, 76, 148, 165, 206, 374, 459, 516, 522
MseI TTAA 2 cut(s) 72, 480
MspA1I CMGCKG 2 cut(s) 341, 407
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 3 cut(s) 22, 259, 306
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 2 cut(s) 22, 306
MwoI GCNNNNNNNGC 6 cut(s) 67, 191, 200, 203, 254, 259
NciI CCSGG 1 cut(s) 259
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 434
NmeAIII GCCGAG 1 cut(s) 73
NspI RCATGY 1 cut(s) 226
PciI ACATGT 1 cut(s) 222
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 3 cut(s) 184, 196, 205
PscI ACATGT 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 20, 304
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 20, 304
PspN4I GGNNCC 1 cut(s) 434
PvuII CAGCTG 2 cut(s) 341, 407
SaqAI TTAA 2 cut(s) 72, 480
SatI GCNGC 3 cut(s) 183, 195, 204
ScrFI CCNGG 3 cut(s) 22, 259, 306
SfaNI GCATC 1 cut(s) 299
Sse9I AATT 2 cut(s) 29, 555
SsiI CCGC 1 cut(s) 384
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 3 cut(s) 20, 257, 304
TaiI ACGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 521, 549
TasI AATT 2 cut(s) 29, 555
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 72, 480
Tru9I TTAA 2 cut(s) 72, 480
TscAI CASTG 1 cut(s) 577
TseI GCWGC 3 cut(s) 182, 194, 203
TspDTI ATGAA 4 cut(s) 17, 90, 135, 368
TspRI CASTG 1 cut(s) 577
XapI RAATTY 2 cut(s) 29, 555
XceI RCATGY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 527
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.