Rroxscaffold_4G00322390

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001817
Physical Location & Seq
Forward (+)
52623773 .. 52636670
12898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322390.1

Sequence Viewer

Length: 2334 bp
ATGCGTAGTACCACCGTCCTCCCCCGGTTTTCGTCCCTAAACGACATCAAGAAAAAGAGTAAAGACGTCTCAGACGAACCCGCCCGCCTTCTTCATCAGTCAATTACGTCTCGTGAGCGAAACCCTGGTTCCACAATTTTGCGGGCAAAGAAAGAAGATCGTCCATCCATTTGCTGGGCTGATGTGGAGGCCTTCCAGGCTGCAATGAATAAGGACATAGAAGGAAATGTGTCTACTTCCCAGCTGTCTGATTCACACACTGCTGTTTTCTCTCAACGAAGAAATCGTACCTCTATTCAGCCATTACAGCAGTTTCATGCTGCTAGCCAGGATGAGAGTGCAGCTTCTCGAATTCGACATAACCAAAAGATTCTGCACCAGCAAGGACTGTATTCATTTGGACTGGAGCCAAAATCACAGCAGTTCGTTGCTGATTATAGACAACAAAAATATGATACTTCTGAGGAACTCAATCAGTTTCCTTTGCTTCAAGAAGTTGATCTCCAAAAAGGACAAGGAGAACAAAATACCAGCCAGATTCTTGAAACAACTGTAATGTCAATTCTGCAGAAAAATCCAATTTCACCACAGCAGGACATAACATCTAATCCTGAAAGTGAATTTCAGTATTTGAAGCTTCCGAAGATCGGTAGTCAAAAGGAAATGATCACAGAGCAGTCAAACATCCCAATACCATCTGAGATATTACTGCCTTGCTTATTGTTTCGTCTTGATAGAAACAGAGGCTTGCAACTTACCACTCTATATGGTAAACTTCAGATGAAAAGCTTGCACCCTGCTCCTGAACGCCAGTTATCGCCTCTGGCTCAACTACCTCCACGGATGTTTTCTATCAGTGCAGGTTCTACACAGTTGACTGATCCTCTTTCATTGTCACAATATCAGAGAGGCACTAACTCTGCCACAGACCTATCAGACATTTCCTCCTCAACTGTTCAAGTGCAGGTTGATTCAAGCCATTCCGTTGTTGAAAACAGTGCTAAAAATCTGATGGATACTGGAAGACAGTCAGATTCTCATGGAATGCAATTAAGTCAAATGTCTTCTTCCTGTACACGCGCTGCTGATCCTAAAAGGAAATGCTCCTCAGCATCCACGCGAGTACTTAATGAGAAGCGGCAACAACAATTGCACTACCCACAATTATCGGTTGCCATGTATGCAAATACTAGCGGTCATTCAGGTGGGGAAGCACAGGAAATGAACATTATTGGTGGATTGCCTTCTGTTTCTGCTCCACAAGTTGAACCAGAAAATGTATTGCCTGGAATATCAACAAATGAGTCTTTTGACAAGCATTCTTTAAAATCTACAAGCATAGTGCCTTCATCAGCAGCAACAACAGTTCCCACAAAACCTGTTTCTCCTCCCATAACAACACAAGTCGATGCTAATTTCACATTAGGCCCTCATATTCATTCCAGAATTTCTCCTGCTGGAGTTGATAGTGGAACACCTCCGGGGAACGCTTTTATTGGCAAAAAGAAGCCTCGTAAAGCAGTTGGTTCTTCACCACAACCAACAAGTGGCATTAATCTTAGGGAAGAGGAAGAGCAGCTTCTTTCTGGTCCCCAGGAGGATTCTCGAGCTTCAGAAGTATCAGGACAAGCTGTGCAAGAAGAAGAAGACGAGAGGCTGATTTTGCAGAAGACTCCCTTAATGAAAAAATTGGCAGAAATCGTGGTCAGATGTGGGTTGAAAAGTATAAGGAATGATGTGGAACAATGCTTATCACTGCGAGTGGATGCTCAGAAACCAAGATTCCACACTATTACTACCTCGAATGTTCAACTGCAAATTATGAATCTCAATTTGGCAGCTAGGAAAGAATGGAAAAAAAGGCAGGCGGAGGAACAAGCGGTCCAGAAGCTTAGTGAACTTGATGTTAGCAATGGAGTCAACCACAATAAGGACAAAGATCAAGGTCATTCTAAATTGTTTAAGGCAAATAAAGAAGAAGATGATAAAATGAGTGCAACAGCAGCAAATGTTGCGGTCCTTGCTGCTGTTGGAGGAGATGACATGTTGTCAAAATGGAAACTTATCGCTGAACGAGCCAGGAAAAAGCGTGAAGGTGGGTTTAATGCTCCATCTGTGTCCCAGGATGTGAACCACAAGCCCACAATAGCGGGAAGAATTATGATGTACAATCGAGAAGCAGAGAAAATGTGCGATGGAGCTGGGACTACAAGAAATTTTGGAGAAAACCAAGTTGTCATGCCCCAAACAAGGGTGGTGCGTAGTATATCAGTTAAAGATGTGATTGCTGTTCTGGAACAGGAACCTTGGATGTCAAAGTCTCCTCTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

777

Amino Acids

85.78

Weight (kDa)

8.78

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 516 - 586 1.2e-16 Transcription initiation factor TFIID component TAF4 family
TAF4 PF05236 587 - 776 3.2e-26 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 69
Acc36I ACCTGC 2 cut(s) 851, 955
AccB7I CCANNNNNTGG 2 cut(s) 174, 1547
AccI GTMKAC 1 cut(s) 233
AccII CGCG 2 cut(s) 1080, 1120
AciI CCGC 9 cut(s) 81, 85, 142, 1138, 1194, 1868, 1880, 2015, 2150
AclWI GGATC 2 cut(s) 875, 1082
AcsI RAATTY 4 cut(s) 351, 620, 1446, 2215
AcuI CTGAAG 2 cut(s) 761, 1596
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 5 cut(s) 10, 289, 1075, 1125, 2168
AfiI CCNNNNNNNGG 6 cut(s) 174, 647, 1547, 1930, 2250, 2251
AflIII ACRYGT 1 cut(s) 2043
AgsI TTSAA 9 cut(s) 491, 545, 634, 959, 975, 992, 1268, 1720, 1811
AhdI GACNNNNNGTC 1 cut(s) 2047
AjnI CCWGG 7 cut(s) 124, 195, 327, 1285, 1593, 2078, 2121
AjuI GAANNNNNNNTTGG 2 cut(s) 1817, 1849
AloI GAACNNNNNNTCC 2 cut(s) 1866, 1898
Alw26I GTCTC 3 cut(s) 73, 114, 2325
AlwI GGATC 2 cut(s) 875, 1082
Ama87I CYCGRG 1 cut(s) 1605
AoxI GGCC 2 cut(s) 189, 1426
ApeKI GCWGC 9 cut(s) 200, 320, 341, 1082, 1355, 1576, 1838, 2003, 2024
ApoI RAATTY 4 cut(s) 351, 620, 1446, 2215
AseI ATTAAT 1 cut(s) 1554
AspLEI GCGC 1 cut(s) 1082
AspS9I GGNCC 4 cut(s) 1427, 1589, 1882, 2017
AsuC2I CCSGG 2 cut(s) 25, 1482
AsuHPI GGTGA 2 cut(s) 576, 1524
AsuNHI GCTAGC 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 1605
AvaII GGWCC 3 cut(s) 1589, 1882, 2017
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BauI CACGAG 1 cut(s) 111
BbsI GAAGAC 4 cut(s) 1030, 1056, 1653, 1676
BbvCI CCTCAGC 1 cut(s) 1108
BbvI GCAGC 9 cut(s) 187, 307, 353, 1069, 1367, 1588, 1850, 2011, 2015
BccI CCATC 5 cut(s) 172, 703, 1006, 2119, 2189
BciT130I CCWGG 7 cut(s) 126, 197, 329, 1287, 1595, 2080, 2123
BciVI GTATCC 1 cut(s) 1009
BclI TGATCA 1 cut(s) 666
BcnI CCSGG 2 cut(s) 25, 1482
BcoDI GTCTC 3 cut(s) 73, 114, 2325
BfaI CTAG 3 cut(s) 324, 1191, 1842
BfmI CTRYAG 1 cut(s) 566
BfuAI ACCTGC 2 cut(s) 851, 955
BfuI GTATCC 1 cut(s) 1009
BglI GCCNNNNNGGC 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 1125
Bme1390I CCNGG 9 cut(s) 25, 126, 197, 329, 1287, 1482, 1595, 2080, 2123
Bme18I GGWCC 3 cut(s) 1589, 1882, 2017
BmeRI GACNNNNNGTC 1 cut(s) 2047
BmeT110I CYCGRG 1 cut(s) 1605
BmgT120I GGNCC 4 cut(s) 1427, 1589, 1882, 2017
BmiI GGNNCC 4 cut(s) 130, 408, 1591, 2304
BmrFI CCNGG 9 cut(s) 25, 126, 197, 329, 1287, 1482, 1595, 2080, 2123
BmsI GCATC 3 cut(s) 1121, 1399, 1756
BmtI GCTAGC 1 cut(s) 327
BpiI GAAGAC 4 cut(s) 1030, 1056, 1653, 1676
BpmI CTGGAG 2 cut(s) 425, 1479
Bpu10I CCTNAGC 1 cut(s) 1108
BpuMI CCSGG 2 cut(s) 25, 1482
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 7 cut(s) 23, 124, 839, 1481, 1593, 2121, 2306
BsaXI ACNNNNNCTCC 2 cut(s) 929, 959
Bsc4I CCNNNNNNNGG 6 cut(s) 174, 647, 1547, 1930, 2250, 2251
Bse1I ACTGG 3 cut(s) 408, 811, 1024
Bse3DI GCAATG 2 cut(s) 210, 1918
BseBI CCWGG 7 cut(s) 126, 197, 329, 1287, 1595, 2080, 2123
BseDI CCNNGG 7 cut(s) 23, 124, 839, 1481, 1593, 2121, 2306
BseGI GGATG 8 cut(s) 164, 337, 684, 849, 1112, 1771, 2131, 2316
BseLI CCNNNNNNNGG 6 cut(s) 174, 647, 1547, 1930, 2250, 2251
BseMI GCAATG 2 cut(s) 210, 1918
BseMII CTCAG 5 cut(s) 84, 453, 690, 1122, 1784
BseNI ACTGG 3 cut(s) 408, 811, 1024
BseRI GAGGAG 5 cut(s) 937, 1096, 1377, 2049, 2313
BseXI GCAGC 9 cut(s) 187, 307, 353, 1069, 1367, 1588, 1850, 2011, 2015
BseYI CCCAGC 3 cut(s) 174, 240, 2201
BsgI GTGCAG 4 cut(s) 359, 360, 879, 983
Bsh1236I CGCG 2 cut(s) 1080, 1120
BshFI GGCC 2 cut(s) 191, 1428
BsiHKCI CYCGRG 1 cut(s) 1605
BsiSI CCGG 2 cut(s) 25, 1481
BslFI GGGAC 4 cut(s) 19, 1575, 2104, 2218
BslI CCNNNNNNNGG 6 cut(s) 174, 647, 1547, 1930, 2250, 2251
BsmAI GTCTC 3 cut(s) 73, 114, 2325
BsmBI CGTCTC 2 cut(s) 73, 114
BsmFI GGGAC 4 cut(s) 19, 1575, 2104, 2218
BsmI GAATGC 2 cut(s) 1050, 1318
BsnI GGCC 2 cut(s) 191, 1428
BsoBI CYCGRG 1 cut(s) 1605
Bsp1407I TGTACA 2 cut(s) 1073, 2166
Bsp143I GATC 7 cut(s) 157, 499, 645, 666, 880, 1087, 1939
BspACI CCGC 9 cut(s) 81, 85, 142, 1138, 1194, 1868, 1880, 2015, 2150
BspANI GGCC 2 cut(s) 191, 1428
BspCNI CTCAG 5 cut(s) 83, 454, 691, 1121, 1783
BspFNI CGCG 2 cut(s) 1080, 1120
BspLI GGNNCC 4 cut(s) 130, 408, 1591, 2304
BspMAI CTGCAG 1 cut(s) 570
BspMI ACCTGC 2 cut(s) 851, 955
BspOI GCTAGC 1 cut(s) 327
BspPI GGATC 2 cut(s) 875, 1082
BspQI GCTCTTC 1 cut(s) 1566
BsrDI GCAATG 2 cut(s) 210, 1918
BsrGI TGTACA 2 cut(s) 1073, 2166
BsrI ACTGG 3 cut(s) 408, 811, 1024
BssECI CCNNGG 7 cut(s) 23, 124, 839, 1481, 1593, 2121, 2306
BssMI GATC 7 cut(s) 157, 499, 645, 666, 880, 1087, 1939
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 2306
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 7 cut(s) 126, 197, 329, 1287, 1595, 2080, 2123
Bst4CI ACNGT 8 cut(s) 16, 390, 553, 873, 955, 998, 1029, 1366
Bst6I CTCTTC 2 cut(s) 1560, 1566
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 2012
BstAUI TGTACA 2 cut(s) 1073, 2166
BstC8I GCNNGC 6 cut(s) 85, 144, 325, 749, 791, 1866
BstDEI CTNAG 7 cut(s) 70, 462, 699, 1108, 1559, 1770, 1892
BstDSI CCRYGG 1 cut(s) 839
BstF5I GGATG 8 cut(s) 164, 337, 684, 849, 1112, 1771, 2131, 2316
BstFNI CGCG 2 cut(s) 1080, 1120
BstHHI GCGC 1 cut(s) 1082
BstKTI GATC 7 cut(s) 160, 502, 648, 669, 883, 1090, 1942
BstMAI GTCTC 3 cut(s) 73, 114, 2325
BstMBI GATC 7 cut(s) 157, 499, 645, 666, 880, 1087, 1939
BstMWI GCNNNNNNNGC 8 cut(s) 197, 307, 1181, 1663, 2003, 2012, 2021, 2075
BstNI CCWGG 7 cut(s) 126, 197, 329, 1287, 1595, 2080, 2123
BstNSI RCATGY 1 cut(s) 2047
BstSCI CCNGG 9 cut(s) 23, 124, 195, 327, 1285, 1480, 1593, 2078, 2121
BstSFI CTRYAG 1 cut(s) 566
BstUI CGCG 2 cut(s) 1080, 1120
BstV1I GCAGC 9 cut(s) 187, 307, 353, 1069, 1367, 1588, 1850, 2011, 2015
BstV2I GAAGAC 4 cut(s) 1030, 1056, 1653, 1676
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 2 cut(s) 191, 1428
BtgI CCRYGG 1 cut(s) 839
BtgZI GCGATG 1 cut(s) 2208
BtsCI GGATG 8 cut(s) 164, 337, 684, 849, 1112, 1771, 2131, 2316
BtsI GCAGTG 2 cut(s) 258, 1754
BtsIMutI CAGTG 4 cut(s) 258, 862, 1003, 1754
BveI ACCTGC 2 cut(s) 851, 955
Cac8I GCNNGC 6 cut(s) 85, 144, 325, 749, 791, 1866
CfoI GCGC 1 cut(s) 1082
Cfr13I GGNCC 4 cut(s) 1427, 1589, 1882, 2017
Csp6I GTAC 5 cut(s) 9, 288, 1074, 1124, 2167
CviAII CATG 5 cut(s) 317, 1040, 1177, 2044, 2239
CviQI GTAC 5 cut(s) 9, 288, 1074, 1124, 2167
DdeI CTNAG 7 cut(s) 70, 462, 699, 1108, 1559, 1770, 1892
DpnI GATC 7 cut(s) 159, 501, 647, 668, 882, 1089, 1941
DpnII GATC 7 cut(s) 157, 499, 645, 666, 880, 1087, 1939
DraI TTTAAA 1 cut(s) 1326
DriI GACNNNNNGTC 1 cut(s) 2047
Eam1104I CTCTTC 2 cut(s) 1560, 1566
Eam1105I GACNNNNNGTC 1 cut(s) 2047
EarI CTCTTC 2 cut(s) 1560, 1566
EciI GGCGGA 1 cut(s) 1883
Eco130I CCWWGG 1 cut(s) 2306
Eco147I AGGCCT 1 cut(s) 191
Eco47I GGWCC 3 cut(s) 1589, 1882, 2017
Eco57I CTGAAG 2 cut(s) 761, 1596
Eco88I CYCGRG 1 cut(s) 1605
EcoO109I RGGNCCY 1 cut(s) 1427
EcoRI GAATTC 1 cut(s) 351
EcoRII CCWGG 7 cut(s) 124, 195, 327, 1285, 1593, 2078, 2121
EcoT14I CCWWGG 1 cut(s) 2306
ErhI CCWWGG 1 cut(s) 2306
Esp3I CGTCTC 2 cut(s) 73, 114
FaeI CATG 5 cut(s) 320, 1043, 1180, 2047, 2242
FalI AAGNNNNNCTT 4 cut(s) 1563, 1595, 1661, 1693
FaqI GGGAC 4 cut(s) 19, 1575, 2104, 2218
FatI CATG 5 cut(s) 316, 1039, 1176, 2043, 2238
FauI CCCGC 4 cut(s) 88, 92, 135, 2143
FbaI TGATCA 1 cut(s) 666
FblI GTMKAC 1 cut(s) 233
FokI GGATG 8 cut(s) 151, 344, 671, 856, 1099, 1778, 2138, 2323
FspBI CTAG 3 cut(s) 324, 1191, 1842
GlaI GCGC 1 cut(s) 1081
GsaI CCCAGC 3 cut(s) 178, 244, 2205
GsuI CTGGAG 2 cut(s) 425, 1479
HaeIII GGCC 2 cut(s) 191, 1428
HapII CCGG 2 cut(s) 25, 1481
HhaI GCGC 1 cut(s) 1082
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 5 cut(s) 320, 1043, 1180, 2047, 2242
Hin6I GCGC 1 cut(s) 1080
HinP1I GCGC 1 cut(s) 1080
HincII GTYRAC 2 cut(s) 876, 1921
HindII GTYRAC 2 cut(s) 876, 1921
HindIII AAGCTT 3 cut(s) 635, 787, 1889
HpaII CCGG 2 cut(s) 25, 1481
HphI GGTGA 2 cut(s) 576, 1524
Hpy166II GTNNAC 7 cut(s) 234, 773, 876, 1076, 1898, 1921, 2131
Hpy8I GTNNAC 7 cut(s) 234, 773, 876, 1076, 1898, 1921, 2131
HpyAV CCTTC 6 cut(s) 98, 202, 215, 1254, 1356, 2087
HpyCH4III ACNGT 8 cut(s) 16, 390, 553, 873, 955, 998, 1029, 1366
HpyCH4IV ACGT 2 cut(s) 66, 107
HpyF10VI GCNNNNNNNGC 8 cut(s) 197, 307, 1181, 1663, 2003, 2012, 2021, 2075
HpyF3I CTNAG 7 cut(s) 70, 462, 699, 1108, 1559, 1770, 1892
HpySE526I ACGT 2 cut(s) 66, 107
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 5 cut(s) 320, 1043, 1180, 2047, 2242
HspAI GCGC 1 cut(s) 1080
Ksp22I TGATCA 1 cut(s) 666
Kzo9I GATC 7 cut(s) 157, 499, 645, 666, 880, 1087, 1939
LguI GCTCTTC 1 cut(s) 1566
LmnI GCTCC 6 cut(s) 406, 805, 1109, 1261, 2113, 2198
Lsp1109I GCAGC 9 cut(s) 187, 307, 353, 1069, 1367, 1588, 1850, 2011, 2015
LweI GCATC 3 cut(s) 1121, 1399, 1756
MaeI CTAG 3 cut(s) 324, 1191, 1842
MaeII ACGT 2 cut(s) 66, 107
MaeIII GTNAC 1 cut(s) 894
MalI GATC 7 cut(s) 159, 501, 647, 668, 882, 1089, 1941
MboI GATC 7 cut(s) 157, 499, 645, 666, 880, 1087, 1939
MfeI CAATTG 1 cut(s) 1148
MlyI GAGTC 3 cut(s) 1313, 1666, 1926
MmeI TCCRAC 1 cut(s) 2011
MseI TTAA 8 cut(s) 1052, 1128, 1325, 1554, 1679, 1962, 2103, 2274
MslI CAYNNNNRTG 1 cut(s) 1203
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 2 cut(s) 25, 1481
MspR9I CCNGG 9 cut(s) 25, 126, 197, 329, 1287, 1482, 1595, 2080, 2123
MunI CAATTG 1 cut(s) 1148
Mva1269I GAATGC 2 cut(s) 1050, 1318
MvaI CCWGG 7 cut(s) 126, 197, 329, 1287, 1595, 2080, 2123
MvnI CGCG 2 cut(s) 1080, 1120
MwoI GCNNNNNNNGC 8 cut(s) 197, 307, 1181, 1663, 2003, 2012, 2021, 2075
NciI CCSGG 2 cut(s) 25, 1482
NdeII GATC 7 cut(s) 157, 499, 645, 666, 880, 1087, 1939
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 5 cut(s) 320, 1043, 1180, 2047, 2242
NlaIV GGNNCC 4 cut(s) 130, 408, 1591, 2304
NmuCI GTSAC 1 cut(s) 894
NspI RCATGY 1 cut(s) 2047
PaeR7I CTCGAG 1 cut(s) 1605
PceI AGGCCT 1 cut(s) 191
PciI ACATGT 1 cut(s) 2043
PciSI GCTCTTC 1 cut(s) 1566
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 283
PctI GAATGC 2 cut(s) 1050, 1318
PfeI GAWTC 8 cut(s) 251, 370, 538, 971, 1034, 1601, 1782, 1825
PflMI CCANNNNNTGG 2 cut(s) 174, 1547
PleI GAGTC 3 cut(s) 1312, 1666, 1925
PpsI GAGTC 3 cut(s) 1312, 1666, 1925
PscI ACATGT 1 cut(s) 2043
PshBI ATTAAT 1 cut(s) 1554
Psp6I CCWGG 7 cut(s) 124, 195, 327, 1285, 1593, 2078, 2121
PspFI CCCAGC 3 cut(s) 174, 240, 2201
PspGI CCWGG 7 cut(s) 124, 195, 327, 1285, 1593, 2078, 2121
PspN4I GGNNCC 4 cut(s) 130, 408, 1591, 2304
PspPI GGNCC 4 cut(s) 1427, 1589, 1882, 2017
PstI CTGCAG 1 cut(s) 570
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 5 cut(s) 10, 289, 1075, 1125, 2168
RsaNI GTAC 5 cut(s) 9, 288, 1074, 1124, 2167
RseI CAYNNNNRTG 1 cut(s) 1203
SapI GCTCTTC 1 cut(s) 1566
SaqAI TTAA 8 cut(s) 1052, 1128, 1325, 1554, 1679, 1962, 2103, 2274
Sau3AI GATC 7 cut(s) 157, 499, 645, 666, 880, 1087, 1939
Sau96I GGNCC 4 cut(s) 1427, 1589, 1882, 2017
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 3 cut(s) 1313, 1666, 1926
ScrFI CCNGG 9 cut(s) 25, 126, 197, 329, 1287, 1482, 1595, 2080, 2123
SfaNI GCATC 3 cut(s) 1121, 1399, 1756
SfcI CTRYAG 1 cut(s) 566
Sfr274I CTCGAG 1 cut(s) 1605
SinI GGWCC 3 cut(s) 1589, 1882, 2017
SlaI CTCGAG 1 cut(s) 1605
SmiMI CAYNNNNRTG 1 cut(s) 1203
SmlI CTYRAG 1 cut(s) 1605
SmoI CTYRAG 1 cut(s) 1605
SseBI AGGCCT 1 cut(s) 191
SsiI CCGC 9 cut(s) 81, 85, 142, 1138, 1194, 1868, 1880, 2015, 2150
SspMI CTAG 3 cut(s) 324, 1191, 1842
StuI AGGCCT 1 cut(s) 191
StyD4I CCNGG 9 cut(s) 23, 124, 195, 327, 1285, 1480, 1593, 2078, 2121
StyI CCWWGG 1 cut(s) 2306
TaaI ACNGT 8 cut(s) 16, 390, 553, 873, 955, 998, 1029, 1366
TaiI ACGT 2 cut(s) 69, 110
TaqI TCGA 6 cut(s) 349, 355, 1407, 1606, 1802, 2173
TatI WGTACW 3 cut(s) 1073, 1123, 2166
TauI GCSGC 1 cut(s) 1141
TfiI GAWTC 8 cut(s) 251, 370, 538, 971, 1034, 1601, 1782, 1825
Tru1I TTAA 8 cut(s) 1052, 1128, 1325, 1554, 1679, 1962, 2103, 2274
Tru9I TTAA 8 cut(s) 1052, 1128, 1325, 1554, 1679, 1962, 2103, 2274
TscAI CASTG 4 cut(s) 265, 862, 1003, 1761
TseFI GTSAC 1 cut(s) 894
TseI GCWGC 9 cut(s) 200, 320, 341, 1082, 1355, 1576, 1838, 2003, 2024
Tsp45I GTSAC 1 cut(s) 894
TspGWI ACGGA 2 cut(s) 856, 973
TspRI CASTG 4 cut(s) 265, 862, 1003, 1761
Van91I CCANNNNNTGG 2 cut(s) 174, 1547
VpaK11BI GGWCC 3 cut(s) 1589, 1882, 2017
VspI ATTAAT 1 cut(s) 1554
XapI RAATTY 4 cut(s) 351, 620, 1446, 2215
XceI RCATGY 1 cut(s) 2047
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 1605
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 3 cut(s) 324, 1191, 1842
ZraI GACGTC 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.