RLG00000002584

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001817
Physical Location & Seq
Reverse (-)
36608918 .. 36616254
7337 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002584

Sequence Viewer

Length: 2790 bp
ATGGACCCATCGATTATGAAGAAGCTCTTGGAAGACGATGAGGATGAAACAATGCATTCGGGGGCGGATGTGGAGGCCTTTCAGGCGGCCCTGAATAGGGACATTGAAGGAGATGTGTCTGCTTCTCAGCGGTCTGATTCAGACTCTGCGGTTTTGTCTCAAGGAAGCAATAATACTTCTAGTCAATCATTACCACAGTTGCATACTGCTAGCCAGGATGAAAGTACCGCTGGTCAAATTCAGCATGACCAAAATATTGCACAACAGCGAGAAATGCAGTCATATGAAATGGAGAAGCAACCCCACAGTGATCTTCAGCAAGGGAAAGGAGATCAAAAACCTCTCCAGACTGGAATGTTGATGTCTGGAAAAAATCCAGTGTCAACACAGGAGCAGGACTCAACTCCTAAACCAGAAAATGAATCTCAGTATGTAAAGCTTCAGAAGATGAGTAGTCAACAGGCAATGACCACGGAGCAGCCAAGCACCCCGATGAATCGCAGTAAACAAGTACCATTTGGTCTGTTACTACCTGTCTTATTGCCTCAACTTGATAAAGACAGAGCCATGCAACTTACAACTCTTTTTGGTAAACTGAAGAACAATGAAATCTCCAAAGATGCTTTTGTCCGACACATTAGAAGTGTTGTTGGGGACCAGATGCTTAAGATGGCAGTACATAAAGTACAGACACAGCCTGCTCTTAAACAACAGTTGATGCCTCAGGCCTCATTGCAGCAGCAACCTCCTAGGTTGCCATCTATTAGTGCAGGTGCTACCCAGTTCACTGATCCTCGTTTTGCAATTCATCAGAGAGGTGCGAACCCTTCCACAGACCCATCGCACATTCCCACAGTTCACGTGCAGACTGATTCAAGCCATTCGGCCATTGAAAACAATGCCAAAAAATTGCGGGAAGCAGAACGTCAGTCAGATTCTCATGCAATGCAAGTAAATCAGATGTCTTCTTCCAGCACAGGAGCTGCCAATCAAGAAAGGGAGCGGTCCTCGGTTGCTATGCAAGTACATAACAAGCAGCAGCAACAGCAACTGCACTACCCCCAATCATCCTTTGCCATGTATGGATCTACTGGTGGTAATTATCATCCATATCCAGGGACAAATGTCAATACAATGCCTCTCAAACAGCAAGCACATGACTCTCATTTGAGGCAAATTCCTCAACATCAAAGCATGGGATCAGCTCAGCCAGGTGGGGTGGAAGCCCAGGGAACAAACATCATGAGTGTGCCCAAATTGGAGAGGCAAAATTCTATGAATGACCCTAGCAGACAGCAGGGTGGATCTCTTCCTCACTTCACAAATAATTCGACTTTACAACAAAATCCAGTTCCTTGGCAGTCTTCAAATAAAGAGCAGATTTCTGGCCCTTTATCATCAATGCCTTATGTAAAACAGGAACCCATTGACCAGAGTGGTGAGCAGCAGCACAAGACCCCGCTATCTAATTCTCAGCGTTTGCCTTATGCTTCTTCTGTGCAACATGAACAAGGAAATGCATCACCTGGAATTTCAATGGATGAGTCTTTAGAGAAGCAGCAGTCTTCAAGAATGGGATTTTCAAGCGCAGGGCCCTCTGGGAGCATGGTGCCTTCGTCATCTACAAGCACAGGGCCCTTGAATCCTGTTTCTTCTTCCACAACGACACAAGCTGATCCTAATTTAAGCTCTCGGATACCTACTGGCACTTCTCCTGCTGGGATTAATAATAGAGTACCTGCAAAAAAGACTTCTGTTGGCCAAAAGAAGCCTAGTGAAGCACTTGGTTCTTCACCACCGCCTTCAAGTAAGAAGCAAAAAGTATCTGGGGCTTTTTTGGATCAAAGCATTGAACAACTCAATGATGTCACAGCTGTTAGTGGAGTTAATCTAAGGGAAGAGGAGGAGCAGCTGTTTTCTGGGCCCAAGGACGACGGTCGAGCTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAAGAAGAAAGGCTGATTTTGCAGAAGACTCCCTTGCAGAAAAAATTGGCAGAAATCATGTTCAGATGTGGTTTGAAAAGTATAAGCAATGATGTGGAACGATGCTTGTCACTGTGCGTGGAGGAAAGAATGAGGGGACTGATAAATAATATGATAAGACTGTCAAAGCAGCGGGTTGATGCTGAGAAACCAAAACATCACACCATCATTACCTCTGATGTTCGGCAACAAATTTTAAATCAGAACAAGAAAGCTAAGGAAGAATGGGAAAAGAAGCAAGCTGAGGCAGAAAAGGTCCGGAAGCTTAATGAACCTGAGGTTAGCAATGGAGTTGACGGTGATAAAGACAGAGATGAAGGTCGTTCTAAATCATTTAAGGCAAACAAAGAAGAAGATGACAAAATGAGGACAACAGCAGCAAATGTTGCTGCCCGTGCTGCTGTTGGAGGAGATGACATGTTGTCAAAATGGCAACTTATGGCTGAGCAAGCTCGCCAAAAACGTGAAGGTGGGAGTGATGTGGCATCTGGGTCTCAGCCAGGTAAAGATGTAAATCGCAAGCCTACATCAGCAGCTGGAAGAATTATGAAGGACAATCAAGAAGTAGAAAAAAGAGGGGGTGCAGCTCCTGTTTCTGCAGCTGGGACTGTTAGAAAATTTGGGAAAAACCAATTTATTGTGCCTCAGACAAGGGTGGCTCGAAGTATTTCTGTCAAGGATGTGATTTCTGTTCTGGAAAGGGAACCTCAAATGTCCAAGTCACCTCTGATATATCGCTTGTATGAGAAAAACCAATCTGACTCTGCGGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

930

Amino Acids

101.94

Weight (kDa)

8.51

Isoelectric Point (pI)

62.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 166 - 230 4.5e-20 RCD1-SRO-TAF4 (RST) plant domain
TAF4 PF05236 620 - 918 3.6e-82 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 761
Acc36I ACCTGC 2 cut(s) 761, 1747
AccB1I GGYRCC 1 cut(s) 1609
AccBSI CCGCTC 1 cut(s) 1003
AccIII TCCGGA 1 cut(s) 2271
AclWI GGATC 6 cut(s) 785, 1093, 1207, 1312, 1670, 1848
AcoI YGGCCR 2 cut(s) 885, 1759
AcsI RAATTY 6 cut(s) 237, 1176, 1270, 1530, 2205, 2630
AcuI CTGAAG 4 cut(s) 299, 425, 617, 1929
AcvI CACGTG 1 cut(s) 862
AfaI GTAC 6 cut(s) 226, 513, 678, 687, 1026, 1737
AfiI CCNNNNNNNGG 3 cut(s) 96, 97, 1115
AflII CTTAAG 1 cut(s) 665
AflIII ACRYGT 1 cut(s) 2430
AhdI GACNNNNNGTC 1 cut(s) 2434
AjnI CCWGG 6 cut(s) 213, 1114, 1210, 1227, 1525, 2512
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
Alw26I GTCTC 2 cut(s) 162, 2511
AlwI GGATC 6 cut(s) 785, 1093, 1207, 1312, 1670, 1848
AlwNI CAGNNNCTG 5 cut(s) 146, 983, 1051, 2549, 2603
Aor13HI TCCGGA 1 cut(s) 2271
AoxI GGCC 9 cut(s) 75, 87, 726, 885, 1387, 1592, 1634, 1759, 1922
ApaI GGGCCC 3 cut(s) 1596, 1638, 1926
ApoI RAATTY 6 cut(s) 237, 1176, 1270, 1530, 2205, 2630
AseI ATTAAT 1 cut(s) 1725
Asp700I GAANNNNTTC 1 cut(s) 2680
AspA2I CCTAGG 1 cut(s) 749
AspLEI GCGC 1 cut(s) 1589
AsuHPI GGTGA 5 cut(s) 1451, 1515, 1785, 2324, 2727
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 4 cut(s) 4, 655, 1005, 2269
AvrII CCTAGG 1 cut(s) 749
AxyI CCTNAGG 2 cut(s) 723, 2289
BaeGI GKGCMC 4 cut(s) 1254, 1596, 1638, 1926
BalI TGGCCA 1 cut(s) 1761
BanI GGYRCC 1 cut(s) 1609
BanII GRGCYC 3 cut(s) 1596, 1638, 1926
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BbrPI CACGTG 1 cut(s) 862
BbsI GAAGAC 5 cut(s) 39, 957, 1356, 1557, 2006
BbvCI CCTCAGC 1 cut(s) 2256
BccI CCATC 5 cut(s) 16, 664, 766, 847, 2186
BciT130I CCWGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
BciVI GTATCC 1 cut(s) 1689
BcoDI GTCTC 2 cut(s) 162, 2511
BfaI CTAG 5 cut(s) 180, 210, 750, 1287, 1773
BfmI CTRYAG 1 cut(s) 2610
BfrI CTTAAG 1 cut(s) 665
BfuAI ACCTGC 2 cut(s) 761, 1747
BfuI GTATCC 1 cut(s) 1689
BglI GCCNNNNNGGC 1 cut(s) 83
BlnI CCTAGG 1 cut(s) 749
BlpI GCTNAGC 2 cut(s) 1206, 2457
Bme1390I CCNGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
Bme18I GGWCC 4 cut(s) 4, 655, 1005, 2269
BmeRI GACNNNNNGTC 1 cut(s) 2434
BmiI GGNNCC 8 cut(s) 6, 656, 1422, 1594, 1611, 1636, 1924, 2718
BmrFI CCNGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
BmrI ACTGGG 1 cut(s) 775
BmsI GCATC 8 cut(s) 610, 651, 708, 1529, 1961, 2066, 2143, 2507
BmtI GCTAGC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 775
BoxI GACNNNNGTC 2 cut(s) 1124, 1935
BpiI GAAGAC 5 cut(s) 39, 957, 1356, 1557, 2006
BplI GAGNNNNNCTC 4 cut(s) 383, 415, 992, 1024
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 2 cut(s) 2229, 2256
Bpu1102I GCTNAGC 2 cut(s) 1206, 2457
BpuEI CTTGAG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 862
BsaBI GATNNNNATC 1 cut(s) 2526
BsaI GGTCTC 1 cut(s) 2511
BsaJI CCNNGG 8 cut(s) 471, 749, 1008, 1115, 1227, 1228, 1355, 1926
BsaWI WCCGGW 1 cut(s) 2271
BsaXI ACNNNNNCTCC 2 cut(s) 1898, 1928
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 97, 1115
Bse1I ACTGG 6 cut(s) 355, 377, 781, 1096, 1349, 1708
Bse21I CCTNAGG 2 cut(s) 723, 2289
Bse3DI GCAATG 5 cut(s) 471, 731, 951, 2068, 2305
Bse8I GATNNNNATC 1 cut(s) 2526
BseAI TCCGGA 1 cut(s) 2271
BseBI CCWGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 8 cut(s) 471, 749, 1008, 1115, 1227, 1228, 1355, 1926
BseGI GGATG 7 cut(s) 49, 73, 223, 1067, 1105, 1546, 2698
BseJI GATNNNNATC 1 cut(s) 2526
BseLI CCNNNNNNNGG 3 cut(s) 96, 97, 1115
BseMI GCAATG 5 cut(s) 471, 731, 951, 2068, 2305
BseNI ACTGG 6 cut(s) 355, 377, 781, 1096, 1349, 1708
BseRI GAGGAG 3 cut(s) 1916, 1919, 2436
BseSI GKGCMC 4 cut(s) 1254, 1596, 1638, 1926
BseYI CCCAGC 2 cut(s) 1718, 2615
BsgI GTGCAG 4 cut(s) 789, 884, 1037, 2616
Bsh1285I CGRYCG 1 cut(s) 1939
BshFI GGCC 9 cut(s) 77, 89, 728, 887, 1389, 1594, 1636, 1761, 1924
BshNI GGYRCC 1 cut(s) 1609
BshVI ATCGAT 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 1939
BsiSI CCGG 1 cut(s) 2272
BslFI GGGAC 5 cut(s) 113, 668, 1132, 2124, 2632
BslI CCNNNNNNNGG 3 cut(s) 96, 97, 1115
BsmAI GTCTC 2 cut(s) 162, 2511
BsmFI GGGAC 5 cut(s) 113, 668, 1132, 2124, 2632
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 9 cut(s) 77, 89, 728, 887, 1389, 1594, 1636, 1761, 1924
Bso31I GGTCTC 1 cut(s) 2511
Bsp120I GGGCCC 3 cut(s) 1592, 1634, 1922
Bsp1286I GDGCHC 4 cut(s) 1254, 1596, 1638, 1926
Bsp13I TCCGGA 1 cut(s) 2271
Bsp143I GATC 8 cut(s) 310, 331, 790, 1085, 1199, 1304, 1675, 1840
Bsp1720I GCTNAGC 2 cut(s) 1206, 2457
BspANI GGCC 9 cut(s) 77, 89, 728, 887, 1389, 1594, 1636, 1761, 1924
BspDI ATCGAT 1 cut(s) 11
BspEI TCCGGA 1 cut(s) 2271
BspHI TCATGA 1 cut(s) 1242
BspLI GGNNCC 8 cut(s) 6, 656, 1422, 1594, 1611, 1636, 1924, 2718
BspMAI CTGCAG 1 cut(s) 2614
BspMI ACCTGC 2 cut(s) 761, 1747
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 6 cut(s) 785, 1093, 1207, 1312, 1670, 1848
BspT107I GGYRCC 1 cut(s) 1609
BspTI CTTAAG 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 2511
BsrBI CCGCTC 1 cut(s) 1003
BsrDI GCAATG 5 cut(s) 471, 731, 951, 2068, 2305
BsrI ACTGG 6 cut(s) 355, 377, 781, 1096, 1349, 1708
BssECI CCNNGG 8 cut(s) 471, 749, 1008, 1115, 1227, 1228, 1355, 1926
BssMI GATC 8 cut(s) 310, 331, 790, 1085, 1199, 1304, 1675, 1840
BssT1I CCWWGG 3 cut(s) 749, 1355, 1926
Bst2UI CCWGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
Bst4CI ACNGT 9 cut(s) 198, 308, 714, 856, 1937, 2088, 2136, 2312, 2623
Bst6I CTCTTC 3 cut(s) 1314, 1893, 1954
BstAFI CTTAAG 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 2399
BstBAI YACGTR 1 cut(s) 862
BstC8I GCNNGC 7 cut(s) 211, 699, 1152, 2253, 2463, 2467, 2534
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 7 cut(s) 49, 73, 223, 1067, 1105, 1546, 2698
BstHHI GCGC 1 cut(s) 1589
BstKTI GATC 8 cut(s) 313, 334, 793, 1088, 1202, 1307, 1678, 1843
BstMAI GTCTC 2 cut(s) 162, 2511
BstMBI GATC 8 cut(s) 310, 331, 790, 1085, 1199, 1304, 1675, 1840
BstMCI CGRYCG 1 cut(s) 1939
BstMWI GCNNNNNNNGC 9 cut(s) 83, 274, 1045, 1949, 1993, 2399, 2408, 2411, 2462
BstNI CCWGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
BstNSI RCATGY 1 cut(s) 2434
BstPAI GACNNNNGTC 2 cut(s) 1124, 1935
BstSCI CCNGG 6 cut(s) 213, 1114, 1210, 1227, 1525, 2512
BstSFI CTRYAG 1 cut(s) 2610
BstSLI GKGCMC 4 cut(s) 1254, 1596, 1638, 1926
BstV2I GAAGAC 5 cut(s) 39, 957, 1356, 1557, 2006
BstX2I RGATCY 2 cut(s) 1085, 1304
BstXI CCANNNNNNTGG 1 cut(s) 1356
BstYI RGATCY 2 cut(s) 1085, 1304
Bsu15I ATCGAT 1 cut(s) 11
Bsu36I CCTNAGG 2 cut(s) 723, 2289
BsuI GTATCC 1 cut(s) 1689
BsuRI GGCC 9 cut(s) 77, 89, 728, 887, 1389, 1594, 1636, 1761, 1924
BsuTUI ATCGAT 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 7 cut(s) 49, 73, 223, 1067, 1105, 1546, 2698
BtsIMutI CAGTG 4 cut(s) 313, 384, 786, 2084
BveI ACCTGC 2 cut(s) 761, 1747
Cac8I GCNNGC 7 cut(s) 211, 699, 1152, 2253, 2463, 2467, 2534
CaiI CAGNNNCTG 5 cut(s) 146, 983, 1051, 2549, 2603
CciI TCATGA 1 cut(s) 1242
CfoI GCGC 1 cut(s) 1589
ClaI ATCGAT 1 cut(s) 11
Csp6I GTAC 6 cut(s) 225, 512, 677, 686, 1025, 1736
CviQI GTAC 6 cut(s) 225, 512, 677, 686, 1025, 1736
DpnI GATC 8 cut(s) 312, 333, 792, 1087, 1201, 1306, 1677, 1842
DpnII GATC 8 cut(s) 310, 331, 790, 1085, 1199, 1304, 1675, 1840
DraI TTTAAA 1 cut(s) 2211
DriI GACNNNNNGTC 1 cut(s) 2434
EaeI YGGCCR 2 cut(s) 885, 1759
Eam1104I CTCTTC 3 cut(s) 1314, 1893, 1954
Eam1105I GACNNNNNGTC 1 cut(s) 2434
EarI CTCTTC 3 cut(s) 1314, 1893, 1954
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 3 cut(s) 749, 1355, 1926
Eco147I AGGCCT 2 cut(s) 77, 728
Eco24I GRGCYC 3 cut(s) 1596, 1638, 1926
Eco31I GGTCTC 1 cut(s) 2511
Eco47I GGWCC 4 cut(s) 4, 655, 1005, 2269
Eco57I CTGAAG 4 cut(s) 299, 425, 617, 1929
Eco72I CACGTG 1 cut(s) 862
Eco81I CCTNAGG 2 cut(s) 723, 2289
EcoO109I RGGNCCY 4 cut(s) 1592, 1593, 1634, 1635
EcoRII CCWGG 6 cut(s) 213, 1114, 1210, 1227, 1525, 2512
EcoT14I CCWWGG 3 cut(s) 749, 1355, 1926
EcoT22I ATGCAT 2 cut(s) 57, 1522
EcoT38I GRGCYC 3 cut(s) 1596, 1638, 1926
ErhI CCWWGG 3 cut(s) 749, 1355, 1926
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 1991, 2023
FaqI GGGAC 5 cut(s) 113, 668, 1132, 2124, 2632
FauI CCCGC 4 cut(s) 906, 1467, 2139, 2773
FauNDI CATATG 1 cut(s) 283
FokI GGATG 7 cut(s) 56, 80, 230, 1054, 1092, 1553, 2705
FriOI GRGCYC 3 cut(s) 1596, 1638, 1926
FspBI CTAG 5 cut(s) 180, 210, 750, 1287, 1773
GlaI GCGC 1 cut(s) 1588
GsaI CCCAGC 2 cut(s) 1722, 2619
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 9 cut(s) 77, 89, 728, 887, 1389, 1594, 1636, 1761, 1924
HapII CCGG 1 cut(s) 2272
HhaI GCGC 1 cut(s) 1589
Hin6I GCGC 1 cut(s) 1587
HinP1I GCGC 1 cut(s) 1587
HincII GTYRAC 3 cut(s) 384, 458, 2308
HindII GTYRAC 3 cut(s) 384, 458, 2308
HindIII AAGCTT 2 cut(s) 437, 2276
HpaII CCGG 1 cut(s) 2272
HphI GGTGA 5 cut(s) 1451, 1515, 1785, 2324, 2727
Hpy166II GTNNAC 7 cut(s) 384, 458, 506, 593, 786, 859, 2308
Hpy188III TCNNGA 9 cut(s) 346, 366, 992, 1243, 1569, 1956, 2272, 2573, 2708
Hpy8I GTNNAC 7 cut(s) 384, 458, 506, 593, 786, 859, 2308
Hpy99I CGWCG 1 cut(s) 1937
HpyAV CCTTC 7 cut(s) 101, 837, 1623, 1812, 2324, 2474, 2557
HpyCH4III ACNGT 9 cut(s) 198, 308, 714, 856, 1937, 2088, 2136, 2312, 2623
HpyCH4IV ACGT 3 cut(s) 861, 925, 2476
HpyF10VI GCNNNNNNNGC 9 cut(s) 83, 274, 1045, 1949, 1993, 2399, 2408, 2411, 2462
HpySE526I ACGT 3 cut(s) 861, 925, 2476
HspAI GCGC 1 cut(s) 1587
Kpn2I TCCGGA 1 cut(s) 2271
Kzo9I GATC 8 cut(s) 310, 331, 790, 1085, 1199, 1304, 1675, 1840
LmnI GCTCC 7 cut(s) 391, 475, 980, 1000, 1602, 1906, 2605
LweI GCATC 8 cut(s) 610, 651, 708, 1529, 1961, 2066, 2143, 2507
MaeI CTAG 5 cut(s) 180, 210, 750, 1287, 1773
MaeII ACGT 3 cut(s) 861, 925, 2476
MaeIII GTNAC 4 cut(s) 525, 1867, 2082, 2733
MalI GATC 8 cut(s) 312, 333, 792, 1087, 1201, 1306, 1677, 1842
MbiI CCGCTC 1 cut(s) 1003
MboI GATC 8 cut(s) 310, 331, 790, 1085, 1199, 1304, 1675, 1840
MflI RGATCY 2 cut(s) 1085, 1304
MhlI GDGCHC 4 cut(s) 1254, 1596, 1638, 1926
MlsI TGGCCA 1 cut(s) 1761
MluNI TGGCCA 1 cut(s) 1761
MlyI GAGTC 6 cut(s) 137, 392, 1154, 1553, 1996, 2768
MmeI TCCRAC 2 cut(s) 655, 2398
Mox20I TGGCCA 1 cut(s) 1761
Mph1103I ATGCAT 2 cut(s) 57, 1522
MroI TCCGGA 1 cut(s) 2271
MroXI GAANNNNTTC 1 cut(s) 2680
MscI TGGCCA 1 cut(s) 1761
MseI TTAA 9 cut(s) 666, 705, 1685, 1725, 1887, 2210, 2280, 2349, 2788
MslI CAYNNNNRTG 2 cut(s) 491, 1247
Msp20I TGGCCA 1 cut(s) 1761
MspA1I CMGCKG 7 cut(s) 130, 230, 1874, 1912, 2146, 2549, 2615
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 1 cut(s) 2272
MspR9I CCNGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
MwoI GCNNNNNNNGC 9 cut(s) 83, 274, 1045, 1949, 1993, 2399, 2408, 2411, 2462
NdeI CATATG 1 cut(s) 283
NdeII GATC 8 cut(s) 310, 331, 790, 1085, 1199, 1304, 1675, 1840
NheI GCTAGC 1 cut(s) 209
NlaIV GGNNCC 8 cut(s) 6, 656, 1422, 1594, 1611, 1636, 1924, 2718
NmuCI GTSAC 3 cut(s) 1867, 2082, 2733
NsiI ATGCAT 2 cut(s) 57, 1522
NspI RCATGY 1 cut(s) 2434
PagI TCATGA 1 cut(s) 1242
PaqCI CACCTGC 1 cut(s) 761
PasI CCCWGGG 1 cut(s) 1228
PceI AGGCCT 2 cut(s) 77, 728
PciI ACATGT 1 cut(s) 2430
PcsI WCGNNNNNNNCGW 1 cut(s) 2473
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 2680
PfeI GAWTC 6 cut(s) 137, 422, 496, 872, 935, 1642
PleI GAGTC 6 cut(s) 137, 392, 1154, 1552, 1996, 2768
PmaCI CACGTG 1 cut(s) 862
PmlI CACGTG 1 cut(s) 862
PpsI GAGTC 6 cut(s) 137, 392, 1154, 1552, 1996, 2768
Ppu21I YACGTR 1 cut(s) 862
PscI ACATGT 1 cut(s) 2430
PshAI GACNNNNGTC 2 cut(s) 1124, 1935
PshBI ATTAAT 1 cut(s) 1725
Psp6I CCWGG 6 cut(s) 213, 1114, 1210, 1227, 1525, 2512
PspCI CACGTG 1 cut(s) 862
PspFI CCCAGC 2 cut(s) 1718, 2615
PspGI CCWGG 6 cut(s) 213, 1114, 1210, 1227, 1525, 2512
PspN4I GGNNCC 8 cut(s) 6, 656, 1422, 1594, 1611, 1636, 1924, 2718
PspOMI GGGCCC 3 cut(s) 1592, 1634, 1922
PstI CTGCAG 1 cut(s) 2614
PstNI CAGNNNCTG 5 cut(s) 146, 983, 1051, 2549, 2603
PsuI RGATCY 2 cut(s) 1085, 1304
PvuII CAGCTG 4 cut(s) 1874, 1912, 2549, 2615
RsaI GTAC 6 cut(s) 226, 513, 678, 687, 1026, 1737
RsaNI GTAC 6 cut(s) 225, 512, 677, 686, 1025, 1736
RseI CAYNNNNRTG 2 cut(s) 491, 1247
SaqAI TTAA 9 cut(s) 666, 705, 1685, 1725, 1887, 2210, 2280, 2349, 2788
Sau3AI GATC 8 cut(s) 310, 331, 790, 1085, 1199, 1304, 1675, 1840
SchI GAGTC 6 cut(s) 137, 392, 1154, 1553, 1996, 2768
ScrFI CCNGG 6 cut(s) 215, 1116, 1212, 1229, 1527, 2514
SduI GDGCHC 4 cut(s) 1254, 1596, 1638, 1926
SfaNI GCATC 8 cut(s) 610, 651, 708, 1529, 1961, 2066, 2143, 2507
SfcI CTRYAG 1 cut(s) 2610
SinI GGWCC 4 cut(s) 4, 655, 1005, 2269
SmiMI CAYNNNNRTG 2 cut(s) 491, 1247
SmlI CTYRAG 2 cut(s) 159, 665
SmoI CTYRAG 2 cut(s) 159, 665
SseBI AGGCCT 2 cut(s) 77, 728
SspI AATATT 1 cut(s) 256
SspMI CTAG 5 cut(s) 180, 210, 750, 1287, 1773
StuI AGGCCT 2 cut(s) 77, 728
StyD4I CCNGG 6 cut(s) 213, 1114, 1210, 1227, 1525, 2512
StyI CCWWGG 3 cut(s) 749, 1355, 1926
TaaI ACNGT 9 cut(s) 198, 308, 714, 856, 1937, 2088, 2136, 2312, 2623
TaiI ACGT 3 cut(s) 864, 928, 2479
TaqI TCGA 5 cut(s) 11, 1331, 1939, 1957, 2674
TatI WGTACW 3 cut(s) 676, 685, 1024
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 6 cut(s) 137, 422, 496, 872, 935, 1642
Tru1I TTAA 9 cut(s) 666, 705, 1685, 1725, 1887, 2210, 2280, 2349, 2788
Tru9I TTAA 9 cut(s) 666, 705, 1685, 1725, 1887, 2210, 2280, 2349, 2788
TscAI CASTG 4 cut(s) 313, 384, 793, 2091
TseFI GTSAC 3 cut(s) 1867, 2082, 2733
Tsp45I GTSAC 3 cut(s) 1867, 2082, 2733
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 4 cut(s) 313, 384, 793, 2091
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 4 cut(s) 4, 655, 1005, 2269
VspI ATTAAT 1 cut(s) 1725
XapI RAATTY 6 cut(s) 237, 1176, 1270, 1530, 2205, 2630
XceI RCATGY 1 cut(s) 2434
XmaJI CCTAGG 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 2680
XspI CTAG 5 cut(s) 180, 210, 750, 1287, 1773
Zsp2I ATGCAT 2 cut(s) 57, 1522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.