Rorug01G0070500

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001817
Physical Location & Seq
Forward (+)
11538671 .. 11539562
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0070500.1

Sequence Viewer

Length: 354 bp
ATGTTTAAAGAAAGGAATCTGGTTACACAGCTTGTTAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCGCTGCTGACACTCCAAGGCTCGGGCGCAGGGACACTGATATCAAGAACAGGTTTACTATGCCACCAAGTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGAATATTTGCCCGCTTTCTCAGCTGGAAGTGGGCGGTAAAGGATCGGAAATGGTATACCCAACAACAACTTGACGAGGTGCGCATTGAAGTAGCCAACTACTTACAGACTGCTGTAGATTCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

117

Amino Acids

13.54

Weight (kDa)

9.3

Isoelectric Point (pI)

21.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 2 - 85 1.8e-13 FMN-dependent dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 308
AccI GTMKAC 1 cut(s) 281
AciI CCGC 2 cut(s) 238, 260
AclWI GGATC 2 cut(s) 180, 276
AcsI RAATTY 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 154, 164, 314
AluBI AGCT 2 cut(s) 31, 249
AluI AGCT 2 cut(s) 31, 249
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 2 cut(s) 180, 276
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 166
AspLEI GCGC 2 cut(s) 102, 309
AvaI CYCGRG 1 cut(s) 95
BbvI GCAGC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 352
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 95
BmsI GCATC 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 36, 259
BseXI GCAGC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 2 cut(s) 172, 268
BspACI CCGC 2 cut(s) 238, 260
BspCNI CTCAG 2 cut(s) 37, 258
BspPI GGATC 2 cut(s) 180, 276
BspTNI GGTCTC 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 2 cut(s) 172, 268
BssNAI GTATAC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 89
Bst1107I GTATAC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 45, 245
BstHHI GCGC 2 cut(s) 102, 309
BstKTI GATC 2 cut(s) 175, 271
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 172, 268
BstMWI GCNNNNNNNGC 2 cut(s) 50, 246
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZ17I GTATAC 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 2 cut(s) 102, 309
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
CviJI RGCY 6 cut(s) 31, 44, 53, 94, 249, 320
CviKI_1 RGCY 6 cut(s) 31, 44, 53, 94, 249, 320
DdeI CTNAG 2 cut(s) 45, 245
DpnI GATC 2 cut(s) 174, 270
DpnII GATC 2 cut(s) 172, 268
DraI TTTAAA 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaiI YATR 4 cut(s) 134, 217, 219, 282
FaqI GGGAC 1 cut(s) 119
FauI CCCGC 1 cut(s) 245
FauNDI CATATG 1 cut(s) 217
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspAI RTGCGCAY 1 cut(s) 308
FspBI CTAG 1 cut(s) 352
FspI TGCGCA 1 cut(s) 308
GlaI GCGC 2 cut(s) 101, 308
GluI GCNGC 1 cut(s) 78
HhaI GCGC 2 cut(s) 102, 309
Hin6I GCGC 2 cut(s) 100, 307
HinP1I GCGC 2 cut(s) 100, 307
HinfI GANTC 3 cut(s) 16, 200, 344
Hpy166II GTNNAC 2 cut(s) 129, 282
Hpy188I TCNGA 2 cut(s) 273, 349
Hpy188III TCNNGA 2 cut(s) 118, 204
Hpy8I GTNNAC 2 cut(s) 129, 282
HpyAV CCTTC 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 246
HpyF3I CTNAG 2 cut(s) 45, 245
HspAI GCGC 2 cut(s) 100, 307
Kzo9I GATC 2 cut(s) 172, 268
LpnPI CCDG 7 cut(s) 5, 39, 88, 109, 189, 210, 235
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 22, 56
MalI GATC 2 cut(s) 174, 270
MboI GATC 2 cut(s) 172, 268
MflI RGATCY 1 cut(s) 172
MluCI AATT 1 cut(s) 166
MnlI CCTC 3 cut(s) 42, 83, 295
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 50, 246
NdeI CATATG 1 cut(s) 217
NdeII GATC 2 cut(s) 172, 268
NsbI TGCGCA 1 cut(s) 308
PfeI GAWTC 3 cut(s) 16, 200, 344
PkrI GCNGC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 172, 268
SetI ASST 4 cut(s) 33, 128, 251, 306
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 339
Sse9I AATT 1 cut(s) 166
SsiI CCGC 2 cut(s) 238, 260
SspI AATATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 89
TasI AATT 1 cut(s) 166
TfiI GAWTC 3 cut(s) 16, 200, 344
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 77
TspRI CASTG 1 cut(s) 115
XapI RAATTY 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.